RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 COL5A1-AS1Q5SY13 56 aa9.15□□□□□ -0.94
COL9A3-207ENST00000467819 MDN1Q9NU22 5596 aa9.13□□□□□ -0.95
COL9A3-207ENST00000467819 TRAV22A0A0B4J277 110 aa9.1□□□□□ -0.95
COL9A3-207ENST00000467819 LOC101927531A0A1B0GV80 90 aa9.08□□□□□ -0.96
COL9A3-207ENST00000467819 ETDBQ3ZM63 59 aa9.03□□□□□ -0.96
COL9A3-207ENST00000467819 NDUFC1O43677 76 aa9.01□□□□□ -0.97
COL9A3-207ENST00000467819 GTF2H5Q6ZYL4 71 aa9.01□□□□□ -0.97
COL9A3-207ENST00000467819 F8W1H4 67 aa8.98□□□□□ -0.97
COL9A3-207ENST00000467819 H0YAA0 97 aa8.98□□□□□ -0.97
COL9A3-207ENST00000467819 ADM2Q7Z4H4 148 aa8.94□□□□□ -0.98
COL9A3-207ENST00000467819 H0Y9P7 68 aa8.93□□□□□ -0.98
COL9A3-207ENST00000467819 A8MUN3 132 aa8.92□□□□□ -0.98
COL9A3-207ENST00000467819 SPRR2FQ96RM1 72 aa8.91□□□□□ -0.98
COL9A3-207ENST00000467819 UQCRQO14949 82 aa8.9□□□□□ -0.98
COL9A3-207ENST00000467819 ATOX1O00244 68 aa8.89□□□□□ -0.99
COL9A3-207ENST00000467819 KRTAP2-3P0C7H8 128 aa8.89□□□□□ -0.99
COL9A3-207ENST00000467819 KRTAP2-4Q9BYR9 128 aa8.89□□□□□ -0.99
COL9A3-207ENST00000467819 PRO2289Q9P1D8 64 aa8.89□□□□□ -0.99
COL9A3-207ENST00000467819 ACYP1P07311 99 aa8.88□□□□□ -0.99
COL9A3-207ENST00000467819 HIST1H4AP62805 103 aaKnown RBP8.88□□□□□ -0.99
COL9A3-207ENST00000467819 SPRR2EP22531 72 aa8.86□□□□□ -0.99
COL9A3-207ENST00000467819 SPRR2BP35325 72 aa8.86□□□□□ -0.99
COL9A3-207ENST00000467819 SPRR2AP35326 72 aa8.86□□□□□ -0.99
COL9A3-207ENST00000467819 MT1XP80297 61 aa8.85□□□□□ -0.99
COL9A3-207ENST00000467819 ATP5EP2Q5VTU8 51 aa8.82□□□□□ -1
COL9A3-207ENST00000467819 PLAC4Q8WY50 150 aa8.81□□□□□ -1
COL9A3-207ENST00000467819 KRTAP8-1Q8IUC2 63 aa8.77□□□□□ -1.01
COL9A3-207ENST00000467819 LINC00208Q96KT6 92 aa8.76□□□□□ -1.01
COL9A3-207ENST00000467819 FAM240AA0A1B0GVK7 77 aa8.74□□□□□ -1.01
COL9A3-207ENST00000467819 R4GN34 69 aa8.73□□□□□ -1.01
COL9A3-207ENST00000467819 PCP4L1A6NKN8 68 aa8.71□□□□□ -1.02
COL9A3-207ENST00000467819 P0C880 135 aa8.69□□□□□ -1.02
COL9A3-207ENST00000467819 KRTAP12-2P59991 146 aa8.67□□□□□ -1.02
COL9A3-207ENST00000467819 LCE1AQ5T7P2 110 aa8.67□□□□□ -1.02
COL9A3-207ENST00000467819 M0QZ58 72 aa8.65□□□□□ -1.02
COL9A3-207ENST00000467819 MP68P56378 58 aa8.64□□□□□ -1.03
COL9A3-207ENST00000467819 C20orf197Q8N268 126 aa8.64□□□□□ -1.03
COL9A3-207ENST00000467819 LINC00643Q86TS7 51 aa8.6□□□□□ -1.03
COL9A3-207ENST00000467819 OCR1Q9BZK8 76 aa8.6□□□□□ -1.03
COL9A3-207ENST00000467819 KRTAP4-8A0A0G2JLE6 195 aa8.59□□□□□ -1.03
COL9A3-207ENST00000467819 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
COL9A3-207ENST00000467819 KRTAP2-2Q9BYT5 123 aa8.58□□□□□ -1.04
COL9A3-207ENST00000467819 KRTAP2-1Q9BYU5 128 aa8.58□□□□□ -1.04
COL9A3-207ENST00000467819 LINC01554Q52M75 96 aa8.57□□□□□ -1.04
COL9A3-207ENST00000467819 SPRR2DP22532 72 aa8.56□□□□□ -1.04
COL9A3-207ENST00000467819 DMAC1Q96GE9 116 aa8.5□□□□□ -1.05
COL9A3-207ENST00000467819 KRTAP10-7P60409 375 aaPredicted RBP8.46□□□□□ -1.06
COL9A3-207ENST00000467819 H3BPC8 53 aa8.44□□□□□ -1.06
COL9A3-207ENST00000467819 KRTAP10-12P60413 245 aa8.39□□□□□ -1.07
COL9A3-207ENST00000467819 LCE3BQ5TA77 95 aa8.34□□□□□ -1.07
COL9A3-207ENST00000467819 MT-ATP8P03928 68 aa8.32□□□□□ -1.08
COL9A3-207ENST00000467819 SCGB1A1P11684 91 aa8.31□□□□□ -1.08
COL9A3-207ENST00000467819 TRAV7A0A075B6U4 112 aa8.3□□□□□ -1.08
COL9A3-207ENST00000467819 ACYP2P14621 99 aa8.24□□□□□ -1.09
COL9A3-207ENST00000467819 SPTSSBQ8NFR3 76 aa8.2□□□□□ -1.1
COL9A3-207ENST00000467819 A0A1B0GV90 55 aa8.19□□□□□ -1.1
COL9A3-207ENST00000467819 J3QR89 54 aa8.14□□□□□ -1.11
COL9A3-207ENST00000467819 CHKB-CPT1BH3BT56 60 aa8.11□□□□□ -1.11
COL9A3-207ENST00000467819 KRTAP13-4Q3LI77 160 aa8□□□□□ -1.13
COL9A3-207ENST00000467819 DSTQ03001 7570 aaKnown RBP7.99□□□□□ -1.13
COL9A3-207ENST00000467819 CAMK2N1Q7Z7J9 78 aa7.99□□□□□ -1.13
COL9A3-207ENST00000467819 SMIM20Q8N5G0 67 aa7.96□□□□□ -1.14
COL9A3-207ENST00000467819 LOC100996750A0A140TA64 210 aa7.95□□□□□ -1.14
COL9A3-207ENST00000467819 KRTAP4-6Q9BYQ5 205 aa7.95□□□□□ -1.14
COL9A3-207ENST00000467819 KRTAP19-7Q3SYF9 63 aa7.92□□□□□ -1.14
COL9A3-207ENST00000467819 SNURFQ9Y675 71 aa7.92□□□□□ -1.14
COL9A3-207ENST00000467819 LCE5AQ5TCM9 118 aa7.91□□□□□ -1.14
COL9A3-207ENST00000467819 GPR98Q8WXG9 6306 aa7.9□□□□□ -1.14
COL9A3-207ENST00000467819 MT1EP04732 61 aa7.87□□□□□ -1.15
COL9A3-207ENST00000467819 KRTAP19-3Q7Z4W3 81 aa7.86□□□□□ -1.15
COL9A3-207ENST00000467819 KRTAP4-9Q9BYQ8 210 aa7.86□□□□□ -1.15
COL9A3-207ENST00000467819 K7ERU9 68 aa7.81□□□□□ -1.16
COL9A3-207ENST00000467819 SPANXA2-OT1Q8N9U9 137 aa7.81□□□□□ -1.16
COL9A3-207ENST00000467819 A0A0D9SG42 100 aa7.75□□□□□ -1.17
COL9A3-207ENST00000467819 CYSTM1Q9H1C7 97 aa7.71□□□□□ -1.18
COL9A3-207ENST00000467819 KRTAP19-5Q3LI72 72 aa7.66□□□□□ -1.18
COL9A3-207ENST00000467819 COA5Q86WW8 74 aa7.65□□□□□ -1.18
COL9A3-207ENST00000467819 SPATA8Q6RVD6 105 aa7.64□□□□□ -1.19
COL9A3-207ENST00000467819 SPINT4Q6UDR6 99 aa7.64□□□□□ -1.19
COL9A3-207ENST00000467819 SEC61GP60059 68 aa7.63□□□□□ -1.19
COL9A3-207ENST00000467819 LCE1DQ5T752 114 aa7.63□□□□□ -1.19
COL9A3-207ENST00000467819 SERP1Q9Y6X1 66 aa7.63□□□□□ -1.19
COL9A3-207ENST00000467819 MT1GP13640 62 aa7.62□□□□□ -1.19
COL9A3-207ENST00000467819 SERP2Q8N6R1 65 aa7.61□□□□□ -1.19
COL9A3-207ENST00000467819 PP632Q6XCG6 107 aa7.57□□□□□ -1.2
COL9A3-207ENST00000467819 A0A1B0GU33 70 aa7.53□□□□□ -1.2
COL9A3-207ENST00000467819 MT4P47944 62 aa7.53□□□□□ -1.2
COL9A3-207ENST00000467819 KRTAP12-1P59990 96 aa7.53□□□□□ -1.2
COL9A3-207ENST00000467819 MT1MQ8N339 61 aa7.52□□□□□ -1.21
COL9A3-207ENST00000467819 LCE4AQ5TA78 99 aa7.51□□□□□ -1.21
COL9A3-207ENST00000467819 HMCN1Q96RW7 5635 aa7.51□□□□□ -1.21
COL9A3-207ENST00000467819 MT1LQ93083 61 aa7.47□□□□□ -1.21
COL9A3-207ENST00000467819 KRTAP4-3Q9BYR4 195 aa7.39□□□□□ -1.23
COL9A3-207ENST00000467819 AHNAK2Q8IVF2 5795 aa7.36□□□□□ -1.23
COL9A3-207ENST00000467819 LCE3AQ5TA76 89 aa7.35□□□□□ -1.23
COL9A3-207ENST00000467819 C10orf95Q9H7T3 257 aa7.35□□□□□ -1.23
COL9A3-207ENST00000467819 SMIM26A0A096LP01 95 aa7.32□□□□□ -1.24
COL9A3-207ENST00000467819 KRTAP5-4Q6L8H1 288 aa7.31□□□□□ -1.24
COL9A3-207ENST00000467819 A8MU10 97 aa7.3□□□□□ -1.24
COL9A3-207ENST00000467819 A0A1B0GU69 56 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms