RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 LRP2P98164 4655 aa3.81□□□□□ -1.8
SCAF4-204ENST00000467731 KRTAP25-1Q3LHN0 102 aa3.8□□□□□ -1.8
SCAF4-204ENST00000467731 A8MWP4 228 aa3.79□□□□□ -1.8
SCAF4-204ENST00000467731 C9orf92A6NGG3 77 aa3.78□□□□□ -1.8
SCAF4-204ENST00000467731 A0A1B0GVX0 72 aa3.78□□□□□ -1.8
SCAF4-204ENST00000467731 WFDC13Q8IUB5 93 aa3.78□□□□□ -1.8
SCAF4-204ENST00000467731 SEC61BP60468 96 aaKnown RBP3.78□□□□□ -1.81
SCAF4-204ENST00000467731 TPRXLQ17RH7 258 aa3.78□□□□□ -1.81
SCAF4-204ENST00000467731 KRTAP13-3Q3SY46 172 aa3.78□□□□□ -1.81
SCAF4-204ENST00000467731 HRES1P13985 223 aa3.77□□□□□ -1.81
SCAF4-204ENST00000467731 UQCR11O14957 56 aa3.75□□□□□ -1.81
SCAF4-204ENST00000467731 C8orf17Q9NRJ1 99 aa3.74□□□□□ -1.81
SCAF4-204ENST00000467731 MMP24-AS1A0A0U1RRL7 71 aa3.73□□□□□ -1.81
SCAF4-204ENST00000467731 XP32Q5T750 250 aa3.73□□□□□ -1.81
SCAF4-204ENST00000467731 PCOTHQ58A44 107 aa3.73□□□□□ -1.81
SCAF4-204ENST00000467731 C20orf166-AS1Q96NR2 134 aa3.73□□□□□ -1.81
SCAF4-204ENST00000467731 A0A1B0GU69 56 aa3.72□□□□□ -1.81
SCAF4-204ENST00000467731 A8MUU9 505 aa3.71□□□□□ -1.82
SCAF4-204ENST00000467731 UBR4Q5T4S7 5183 aa3.7□□□□□ -1.82
SCAF4-204ENST00000467731 NDUFAF8A1L188 74 aa3.7□□□□□ -1.82
SCAF4-204ENST00000467731 MRPL34Q9BQ48 92 aaKnown RBP3.7□□□□□ -1.82
SCAF4-204ENST00000467731 LUZP6Q538Z0 58 aa3.69□□□□□ -1.82
SCAF4-204ENST00000467731 MUC2Q02817 5179 aa3.68□□□□□ -1.82
SCAF4-204ENST00000467731 RPL37P61927 97 aaKnown RBP3.68□□□□□ -1.82
SCAF4-204ENST00000467731 K7ERS5 55 aa3.67□□□□□ -1.82
SCAF4-204ENST00000467731 DMAC1Q96GE9 116 aa3.67□□□□□ -1.82
SCAF4-204ENST00000467731 TP53AIP1Q9HCN2 124 aa3.67□□□□□ -1.82
SCAF4-204ENST00000467731 MUC17Q685J3 4493 aa3.67□□□□□ -1.82
SCAF4-204ENST00000467731 ACYP2P14621 99 aa3.66□□□□□ -1.82
SCAF4-204ENST00000467731 RNF213Q63HN8 5207 aa3.64□□□□□ -1.83
SCAF4-204ENST00000467731 Q5W150 140 aa3.62□□□□□ -1.83
SCAF4-204ENST00000467731 SPINT4Q6UDR6 99 aa3.61□□□□□ -1.83
SCAF4-204ENST00000467731 KRTAP15-1Q3LI76 137 aa3.59□□□□□ -1.84
SCAF4-204ENST00000467731 KRTAP4-1Q9BYQ7 146 aa3.59□□□□□ -1.84
SCAF4-204ENST00000467731 LCE2BO14633 110 aa3.57□□□□□ -1.84
SCAF4-204ENST00000467731 IGKV2D-30A0A075B6S6 120 aa3.56□□□□□ -1.84
SCAF4-204ENST00000467731 IGKV2-30P06310 120 aa3.56□□□□□ -1.84
SCAF4-204ENST00000467731 FAT4Q6V0I7 4981 aa3.51□□□□□ -1.85
SCAF4-204ENST00000467731 CRIPTQ9P021 101 aa3.51□□□□□ -1.85
SCAF4-204ENST00000467731 FLGP20930 4061 aaPredicted RBP3.48□□□□□ -1.85
SCAF4-204ENST00000467731 KRTAP19-2Q3LHN2 52 aa3.47□□□□□ -1.85
SCAF4-204ENST00000467731 H0YAA0 97 aa3.45□□□□□ -1.86
SCAF4-204ENST00000467731 COX6B2Q6YFQ2 88 aa3.45□□□□□ -1.86
SCAF4-204ENST00000467731 LCE2CQ5TA81 110 aa3.43□□□□□ -1.86
SCAF4-204ENST00000467731 CAMK2N1Q7Z7J9 78 aa3.42□□□□□ -1.86
SCAF4-204ENST00000467731 KRTAP3-1Q9BYR8 98 aa3.42□□□□□ -1.86
SCAF4-204ENST00000467731 LCE2AQ5TA79 106 aaPredicted RBP3.39□□□□□ -1.87
SCAF4-204ENST00000467731 H1FX-AS1Q4G0G2 97 aa3.39□□□□□ -1.87
SCAF4-204ENST00000467731 A0A1B0GU33 70 aa3.38□□□□□ -1.87
SCAF4-204ENST00000467731 MT1HP80294 61 aa3.38□□□□□ -1.87
SCAF4-204ENST00000467731 S4R3F8 94 aa3.34□□□□□ -1.87
SCAF4-204ENST00000467731 M0R2T5 61 aa3.34□□□□□ -1.87
SCAF4-204ENST00000467731 C10orf95Q9H7T3 257 aa3.3□□□□□ -1.88
SCAF4-204ENST00000467731 KRTAP10-6P60371 365 aaPredicted RBP3.27□□□□□ -1.89
SCAF4-204ENST00000467731 LORP23490 312 aaPredicted RBP3.27□□□□□ -1.89
SCAF4-204ENST00000467731 KRTAP9-8Q9BYQ0 159 aa3.24□□□□□ -1.89
SCAF4-204ENST00000467731 MT2AP02795 61 aa3.21□□□□□ -1.9
SCAF4-204ENST00000467731 MT1FP04733 61 aa3.19□□□□□ -1.9
SCAF4-204ENST00000467731 PLAC4Q8WY50 150 aa3.19□□□□□ -1.9
SCAF4-204ENST00000467731 PRO2289Q9P1D8 64 aa3.19□□□□□ -1.9
SCAF4-204ENST00000467731 KRTAP10-10P60014 251 aa3.18□□□□□ -1.9
SCAF4-204ENST00000467731 KRTAP9-3Q9BYQ3 159 aa3.12□□□□□ -1.91
SCAF4-204ENST00000467731 R4GN34 69 aa3.1□□□□□ -1.91
SCAF4-204ENST00000467731 A0A0D9SG42 100 aa3.09□□□□□ -1.91
SCAF4-204ENST00000467731 KRTAP19-1Q8IUB9 90 aa3.09□□□□□ -1.92
SCAF4-204ENST00000467731 SPRR2GQ9BYE4 73 aa3.07□□□□□ -1.92
SCAF4-204ENST00000467731 USH2AO75445 5202 aa3.07□□□□□ -1.92
SCAF4-204ENST00000467731 M0QZ58 72 aa3.06□□□□□ -1.92
SCAF4-204ENST00000467731 FSIP2Q5CZC0 6907 aa3.06□□□□□ -1.92
SCAF4-204ENST00000467731 KRTAP13-4Q3LI77 160 aa3.05□□□□□ -1.92
SCAF4-204ENST00000467731 KRTAP9-2Q9BYQ4 174 aa3.05□□□□□ -1.92
SCAF4-204ENST00000467731 KRTAP23-1A1A580 65 aa3.05□□□□□ -1.92
SCAF4-204ENST00000467731 INE1O15225 51 aa3.01□□□□□ -1.93
SCAF4-204ENST00000467731 KRTAP12-2P59991 146 aa3.01□□□□□ -1.93
SCAF4-204ENST00000467731 LOC100996750A0A140TA64 210 aa3.01□□□□□ -1.93
SCAF4-204ENST00000467731 KRTAP4-6Q9BYQ5 205 aa3.01□□□□□ -1.93
SCAF4-204ENST00000467731 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
SCAF4-204ENST00000467731 SSPOA2VEC9 5147 aa2.99□□□□□ -1.93
SCAF4-204ENST00000467731 MT1BP07438 61 aa2.99□□□□□ -1.93
SCAF4-204ENST00000467731 KRTAP12-1P59990 96 aa2.97□□□□□ -1.93
SCAF4-204ENST00000467731 CRCT1Q9UGL9 99 aa2.91□□□□□ -1.94
SCAF4-204ENST00000467731 KRTAP19-6Q3LI70 58 aa2.9□□□□□ -1.95
SCAF4-204ENST00000467731 PP632Q6XCG6 107 aa2.89□□□□□ -1.95
SCAF4-204ENST00000467731 FCGBPQ9Y6R7 5405 aaPredicted RBP2.88□□□□□ -1.95
SCAF4-204ENST00000467731 SPRR5A0A1B0GTR4 108 aa2.87□□□□□ -1.95
SCAF4-204ENST00000467731 MT1XP80297 61 aa2.86□□□□□ -1.95
SCAF4-204ENST00000467731 KRTAP10-5P60370 271 aa2.86□□□□□ -1.95
SCAF4-204ENST00000467731 KRTAP9-6A0A140TA67 174 aa2.85□□□□□ -1.95
SCAF4-204ENST00000467731 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.96
SCAF4-204ENST00000467731 KMT2DO14686 5537 aa2.78□□□□□ -1.96
SCAF4-204ENST00000467731 MACF1Q9UPN3 7388 aaKnown RBP2.76□□□□□ -1.97
SCAF4-204ENST00000467731 KRTAP10-7P60409 375 aaPredicted RBP2.75□□□□□ -1.97
SCAF4-204ENST00000467731 KRTAP4-8Q9BYQ9 185 aa2.75□□□□□ -1.97
SCAF4-204ENST00000467731 KRTAP10-12P60413 245 aa2.71□□□□□ -1.98
SCAF4-204ENST00000467731 SYNE2Q8WXH0 6885 aaKnown RBP2.7□□□□□ -1.98
SCAF4-204ENST00000467731 TNP1P09430 55 aa2.7□□□□□ -1.98
SCAF4-204ENST00000467731 LCE3BQ5TA77 95 aa2.69□□□□□ -1.98
SCAF4-204ENST00000467731 KRTAP4-8A0A0G2JLE6 195 aa2.68□□□□□ -1.98
SCAF4-204ENST00000467731 KRTAP9-9Q9BYP9 154 aa2.65□□□□□ -1.98
SCAF4-204ENST00000467731 KRTAP9-4Q9BYQ2 154 aa2.65□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms