RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
SCAF4-204ENST00000467731 CCDC180Q9P1Z9 1646 aa14.18□□□□□ -0.14
SCAF4-204ENST00000467731 ABCC9O60706 1549 aa13.62□□□□□ -0.23
SCAF4-204ENST00000467731 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
SCAF4-204ENST00000467731 DCAF8L2P0C7V8 631 aa13.37□□□□□ -0.27
SCAF4-204ENST00000467731 DCAF1Q9Y4B6 1507 aa13.31□□□□□ -0.28
SCAF4-204ENST00000467731 NACADO15069 1562 aa13.25□□□□□ -0.29
SCAF4-204ENST00000467731 MYO15BQ96JP2 1530 aa13.25□□□□□ -0.29
SCAF4-204ENST00000467731 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
SCAF4-204ENST00000467731 SCRIBQ14160 1630 aa13□□□□□ -0.33
SCAF4-204ENST00000467731 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
SCAF4-204ENST00000467731 SHROOM4Q9ULL8 1493 aa12.95□□□□□ -0.34
SCAF4-204ENST00000467731 BICRAQ9NZM4 1560 aa12.82□□□□□ -0.36
SCAF4-204ENST00000467731 PABPN1Q86U42 306 aaKnown RBP eCLIP12.78□□□□□ -0.36
SCAF4-204ENST00000467731 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
SCAF4-204ENST00000467731 BAZ1AQ9NRL2 1556 aaPredicted RBP12.46□□□□□ -0.42
SCAF4-204ENST00000467731 EIF4G1Q04637 1599 aaKnown RBP12.45□□□□□ -0.42
SCAF4-204ENST00000467731 SMARCA4P51532 1647 aa12.45□□□□□ -0.42
SCAF4-204ENST00000467731 MROH2BQ7Z745 1585 aa12.43□□□□□ -0.42
SCAF4-204ENST00000467731 RSF1Q96T23 1441 aaPredicted RBP12.38□□□□□ -0.43
SCAF4-204ENST00000467731 CC2D2AQ9P2K1 1620 aa12.33□□□□□ -0.43
SCAF4-204ENST00000467731 WIZO95785 1651 aa12.33□□□□□ -0.44
SCAF4-204ENST00000467731 SUPT5HO00267 1087 aaKnown RBP12.32□□□□□ -0.44
SCAF4-204ENST00000467731 PEG3Q9GZU2 1588 aa12.3□□□□□ -0.44
SCAF4-204ENST00000467731 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
SCAF4-204ENST00000467731 SMARCA2P51531 1590 aa12.28□□□□□ -0.44
SCAF4-204ENST00000467731 DNAJC5BQ9UF47 199 aa12.24□□□□□ -0.45
SCAF4-204ENST00000467731 NCAPD3P42695 1498 aa12.22□□□□□ -0.45
SCAF4-204ENST00000467731 BAZ1BQ9UIG0 1483 aaKnown RBP12.21□□□□□ -0.45
SCAF4-204ENST00000467731 HMGXB3Q12766 1538 aa12.2□□□□□ -0.46
SCAF4-204ENST00000467731 TOP2AP11388 1531 aaKnown RBP12.18□□□□□ -0.46
SCAF4-204ENST00000467731 CCDC88BA6NC98 1476 aa12.05□□□□□ -0.48
SCAF4-204ENST00000467731 CADPSQ9ULU8 1353 aa11.89□□□□□ -0.51
SCAF4-204ENST00000467731 CFTRP13569 1480 aa11.89□□□□□ -0.51
SCAF4-204ENST00000467731 NESP48681 1621 aa11.88□□□□□ -0.51
SCAF4-204ENST00000467731 LAMC3Q9Y6N6 1575 aa11.87□□□□□ -0.51
SCAF4-204ENST00000467731 PRDM2Q13029 1718 aa11.85□□□□□ -0.51
SCAF4-204ENST00000467731 KIF21AQ7Z4S6 1674 aa11.77□□□□□ -0.53
SCAF4-204ENST00000467731 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.53
SCAF4-204ENST00000467731 PDS5BQ9NTI5 1447 aa11.76□□□□□ -0.53
SCAF4-204ENST00000467731 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
SCAF4-204ENST00000467731 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
SCAF4-204ENST00000467731 ERCC6Q03468 1493 aa11.71□□□□□ -0.54
SCAF4-204ENST00000467731 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
SCAF4-204ENST00000467731 CHIC1Q5VXU3 224 aa11.65□□□□□ -0.54
SCAF4-204ENST00000467731 SYNJ1O43426 1573 aa11.65□□□□□ -0.54
SCAF4-204ENST00000467731 CUX1P39880 1505 aa11.64□□□□□ -0.55
SCAF4-204ENST00000467731 URB2Q14146 1524 aaKnown RBP11.63□□□□□ -0.55
SCAF4-204ENST00000467731 MRC2Q9UBG0 1479 aa11.63□□□□□ -0.55
SCAF4-204ENST00000467731 THOC2Q8NI27 1593 aaKnown RBP11.63□□□□□ -0.55
SCAF4-204ENST00000467731 DNMBPQ6XZF7 1577 aa11.62□□□□□ -0.55
SCAF4-204ENST00000467731 TOP2BQ02880 1626 aa11.62□□□□□ -0.55
SCAF4-204ENST00000467731 BIVM-ERCC5R4GMW8 1640 aa11.61□□□□□ -0.55
SCAF4-204ENST00000467731 TOPBP1Q92547 1522 aa11.61□□□□□ -0.55
SCAF4-204ENST00000467731 TRIM41Q8WV44 630 aa11.6□□□□□ -0.55
SCAF4-204ENST00000467731 WDR62O43379 1518 aa11.6□□□□□ -0.55
SCAF4-204ENST00000467731 FGD5Q6ZNL6 1462 aa11.55□□□□□ -0.56
SCAF4-204ENST00000467731 POLA1P09884 1462 aaPredicted RBP11.54□□□□□ -0.56
SCAF4-204ENST00000467731 CUX2O14529 1486 aa11.5□□□□□ -0.57
SCAF4-204ENST00000467731 RAD54L2Q9Y4B4 1467 aa11.5□□□□□ -0.57
SCAF4-204ENST00000467731 SOGA1O94964 1423 aa11.48□□□□□ -0.57
SCAF4-204ENST00000467731 TARBP1Q13395 1621 aaKnown RBP11.47□□□□□ -0.57
SCAF4-204ENST00000467731 WDR97A6NE52 1622 aa11.46□□□□□ -0.58
SCAF4-204ENST00000467731 IFT140Q96RY7 1462 aa11.45□□□□□ -0.58
SCAF4-204ENST00000467731 ABCA10Q8WWZ4 1543 aa11.44□□□□□ -0.58
SCAF4-204ENST00000467731 RUSC2Q8N2Y8 1516 aa11.42□□□□□ -0.58
SCAF4-204ENST00000467731 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
SCAF4-204ENST00000467731 TDRD9Q8NDG6 1382 aaKnown RBP11.4□□□□□ -0.58
SCAF4-204ENST00000467731 KIF27Q86VH2 1401 aa11.39□□□□□ -0.59
SCAF4-204ENST00000467731 ABCA5Q8WWZ7 1642 aa11.39□□□□□ -0.59
SCAF4-204ENST00000467731 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
SCAF4-204ENST00000467731 AQRO60306 1485 aaKnown RBP eCLIP11.38□□□□□ -0.597e-7■■■□□ 18.8
SCAF4-204ENST00000467731 EIF4G3O43432 1585 aaKnown RBP11.38□□□□□ -0.59
SCAF4-204ENST00000467731 GAPVD1Q14C86 1478 aa11.36□□□□□ -0.59
SCAF4-204ENST00000467731 EEA1Q15075 1411 aa11.35□□□□□ -0.59
SCAF4-204ENST00000467731 PBRM1Q86U86 1689 aa11.35□□□□□ -0.59
SCAF4-204ENST00000467731 ERICH3Q5RHP9 1530 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 GRIN2BQ13224 1484 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 IGF1RP08069 1367 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 CUL7Q14999 1698 aa11.27□□□□□ -0.6
SCAF4-204ENST00000467731 SNAPC4Q5SXM2 1469 aa11.27□□□□□ -0.61
SCAF4-204ENST00000467731 CARMIL1Q5VZK9 1371 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 ADAMTS12P58397 1594 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 MAGI1Q96QZ7 1491 aaPredicted RBP11.25□□□□□ -0.61
SCAF4-204ENST00000467731 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
SCAF4-204ENST00000467731 KIF21BO75037 1637 aa11.24□□□□□ -0.61
SCAF4-204ENST00000467731 FHAD1B1AJZ9 1412 aa11.23□□□□□ -0.61
SCAF4-204ENST00000467731 RAPGEF2Q9Y4G8 1499 aa11.22□□□□□ -0.61
SCAF4-204ENST00000467731 SYNJ2O15056 1496 aa11.21□□□□□ -0.62
SCAF4-204ENST00000467731 LOC105371045A0A1W2PR82 267 aa11.2□□□□□ -0.62
SCAF4-204ENST00000467731 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 CHD1O14646 1710 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 FBLN2P98095 1184 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 CHMP7Q8WUX9 453 aaPredicted RBP11.18□□□□□ -0.62
SCAF4-204ENST00000467731 GRIN2AQ12879 1464 aa11.18□□□□□ -0.62
SCAF4-204ENST00000467731 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
SCAF4-204ENST00000467731 CTTNBP2Q8WZ74 1663 aa11.13□□□□□ -0.63
SCAF4-204ENST00000467731 CEP170Q5SW79 1584 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms