RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SCGB1A1P11684 91 aa5.75□□□□□ -1.49
SQSTM1-206ENST00000466342 MP68P56378 58 aa5.73□□□□□ -1.49
SQSTM1-206ENST00000466342 C1orf64Q8NEQ6 169 aa5.73□□□□□ -1.49
SQSTM1-206ENST00000466342 C5orf47Q569G3 176 aa5.72□□□□□ -1.49
SQSTM1-206ENST00000466342 LINC00208Q96KT6 92 aa5.72□□□□□ -1.49
SQSTM1-206ENST00000466342 KRTAP3-1Q9BYR8 98 aa5.72□□□□□ -1.49
SQSTM1-206ENST00000466342 FAM236AA0A1B0GUQ0 79 aa5.7□□□□□ -1.5
SQSTM1-206ENST00000466342 FAM236BA0A1B0GV22 79 aa5.7□□□□□ -1.5
SQSTM1-206ENST00000466342 H3BPC8 53 aa5.68□□□□□ -1.5
SQSTM1-206ENST00000466342 SMIM20Q8N5G0 67 aa5.66□□□□□ -1.5
SQSTM1-206ENST00000466342 KLKP1Q107X0 134 aa5.65□□□□□ -1.5
SQSTM1-206ENST00000466342 S4R3F8 94 aa5.65□□□□□ -1.5
SQSTM1-206ENST00000466342 TRAV7A0A075B6U4 112 aa5.64□□□□□ -1.51
SQSTM1-206ENST00000466342 KRTAP2-3P0C7H8 128 aa5.62□□□□□ -1.51
SQSTM1-206ENST00000466342 KRTAP2-4Q9BYR9 128 aa5.62□□□□□ -1.51
SQSTM1-206ENST00000466342 LCA10Q71F78 164 aa5.61□□□□□ -1.51
SQSTM1-206ENST00000466342 PCP4P48539 62 aa5.6□□□□□ -1.51
SQSTM1-206ENST00000466342 A8MUN3 132 aa5.59□□□□□ -1.51
SQSTM1-206ENST00000466342 MDN1Q9NU22 5596 aa5.58□□□□□ -1.52
SQSTM1-206ENST00000466342 ANAPC13Q9BS18 74 aa5.57□□□□□ -1.52
SQSTM1-206ENST00000466342 CSAG1Q6PB30 78 aa5.56□□□□□ -1.52
SQSTM1-206ENST00000466342 KRTAP5-9P26371 169 aa5.55□□□□□ -1.52
SQSTM1-206ENST00000466342 KRTAP3-3Q9BYR6 98 aa5.55□□□□□ -1.52
SQSTM1-206ENST00000466342 KMT2DO14686 5537 aa5.55□□□□□ -1.52
SQSTM1-206ENST00000466342 SERP2Q8N6R1 65 aa5.54□□□□□ -1.52
SQSTM1-206ENST00000466342 DMAC1Q96GE9 116 aa5.51□□□□□ -1.53
SQSTM1-206ENST00000466342 SNURFQ9Y675 71 aa5.5□□□□□ -1.53
SQSTM1-206ENST00000466342 NDUFC1O43677 76 aa5.49□□□□□ -1.53
SQSTM1-206ENST00000466342 COX7CP15954 63 aa5.49□□□□□ -1.53
SQSTM1-206ENST00000466342 C20orf197Q8N268 126 aa5.48□□□□□ -1.53
SQSTM1-206ENST00000466342 CCDC179H3BU77 68 aa5.47□□□□□ -1.53
SQSTM1-206ENST00000466342 A6NN06 94 aa5.46□□□□□ -1.54
SQSTM1-206ENST00000466342 ACYP2P14621 99 aa5.41□□□□□ -1.54
SQSTM1-206ENST00000466342 SPANXA2-OT1Q8N9U9 137 aa5.41□□□□□ -1.54
SQSTM1-206ENST00000466342 H0YAA0 97 aa5.4□□□□□ -1.54
SQSTM1-206ENST00000466342 KRTAP2-2Q9BYT5 123 aa5.4□□□□□ -1.54
SQSTM1-206ENST00000466342 KRTAP2-1Q9BYU5 128 aa5.4□□□□□ -1.54
SQSTM1-206ENST00000466342 CYSTM1Q9H1C7 97 aa5.38□□□□□ -1.55
SQSTM1-206ENST00000466342 ADM2Q7Z4H4 148 aa5.33□□□□□ -1.56
SQSTM1-206ENST00000466342 SPRR2GQ9BYE4 73 aa5.32□□□□□ -1.56
SQSTM1-206ENST00000466342 CRIPTQ9P021 101 aa5.32□□□□□ -1.56
SQSTM1-206ENST00000466342 CHKB-CPT1BH3BT56 60 aa5.31□□□□□ -1.56
SQSTM1-206ENST00000466342 H7BZZ5 65 aa5.31□□□□□ -1.56
SQSTM1-206ENST00000466342 SPTSSBQ8NFR3 76 aa5.31□□□□□ -1.56
SQSTM1-206ENST00000466342 SPRR2EP22531 72 aa5.3□□□□□ -1.56
SQSTM1-206ENST00000466342 SPRR2BP35325 72 aa5.3□□□□□ -1.56
SQSTM1-206ENST00000466342 SPRR2AP35326 72 aa5.3□□□□□ -1.56
SQSTM1-206ENST00000466342 KRTAP10-5P60370 271 aa5.3□□□□□ -1.56
SQSTM1-206ENST00000466342 MT1BP07438 61 aa5.29□□□□□ -1.56
SQSTM1-206ENST00000466342 KRTAP19-8Q3LI54 63 aa5.29□□□□□ -1.56
SQSTM1-206ENST00000466342 Q5VV11 94 aa5.29□□□□□ -1.56
SQSTM1-206ENST00000466342 P0C880 135 aa5.24□□□□□ -1.57
SQSTM1-206ENST00000466342 TMEM258P61165 79 aa5.24□□□□□ -1.57
SQSTM1-206ENST00000466342 COA5Q86WW8 74 aa5.23□□□□□ -1.57
SQSTM1-206ENST00000466342 SPRR2FQ96RM1 72 aa5.23□□□□□ -1.57
SQSTM1-206ENST00000466342 KRTAP3-2Q9BYR7 98 aa5.23□□□□□ -1.57
SQSTM1-206ENST00000466342 R4GN34 69 aa5.18□□□□□ -1.58
SQSTM1-206ENST00000466342 ATP5EP56381 51 aaPredicted RBP5.16□□□□□ -1.58
SQSTM1-206ENST00000466342 M0QZ58 72 aa5.15□□□□□ -1.59
SQSTM1-206ENST00000466342 LCE1AQ5T7P2 110 aa5.15□□□□□ -1.59
SQSTM1-206ENST00000466342 SPRR2DP22532 72 aa5.13□□□□□ -1.59
SQSTM1-206ENST00000466342 GPR98Q8WXG9 6306 aa5.11□□□□□ -1.59
SQSTM1-206ENST00000466342 SERP1Q9Y6X1 66 aa5.09□□□□□ -1.59
SQSTM1-206ENST00000466342 RPS28P62857 69 aaKnown RBP5.07□□□□□ -1.6
SQSTM1-206ENST00000466342 SEC61GP60059 68 aa5.05□□□□□ -1.6
SQSTM1-206ENST00000466342 LINC01554Q52M75 96 aa5.05□□□□□ -1.6
SQSTM1-206ENST00000466342 LCE3BQ5TA77 95 aa5.05□□□□□ -1.6
SQSTM1-206ENST00000466342 PLAC4Q8WY50 150 aa5.04□□□□□ -1.6
SQSTM1-206ENST00000466342 KRTAP8-1Q8IUC2 63 aa5.01□□□□□ -1.61
SQSTM1-206ENST00000466342 KRTAP13-4Q3LI77 160 aa4.99□□□□□ -1.61
SQSTM1-206ENST00000466342 PRO2289Q9P1D8 64 aa4.99□□□□□ -1.61
SQSTM1-206ENST00000466342 A0A1B0GU69 56 aa4.96□□□□□ -1.62
SQSTM1-206ENST00000466342 SMIM26A0A096LP01 95 aa4.95□□□□□ -1.62
SQSTM1-206ENST00000466342 A0A1B0GU33 70 aa4.95□□□□□ -1.62
SQSTM1-206ENST00000466342 MT1XP80297 61 aa4.95□□□□□ -1.62
SQSTM1-206ENST00000466342 SPATA8Q6RVD6 105 aa4.9□□□□□ -1.63
SQSTM1-206ENST00000466342 LINC01558Q9Y6Z2 57 aa4.89□□□□□ -1.63
SQSTM1-206ENST00000466342 PRR15LQ9BU68 103 aa4.88□□□□□ -1.63
SQSTM1-206ENST00000466342 KRTAP12-2P59991 146 aa4.86□□□□□ -1.63
SQSTM1-206ENST00000466342 Q1T7F1 81 aa4.86□□□□□ -1.63
SQSTM1-206ENST00000466342 KRTAP4-9Q9BYQ8 210 aa4.86□□□□□ -1.63
SQSTM1-206ENST00000466342 A0A0D9SG42 100 aa4.85□□□□□ -1.63
SQSTM1-206ENST00000466342 V9GYY9 64 aa4.82□□□□□ -1.64
SQSTM1-206ENST00000466342 DSTQ03001 7570 aaKnown RBP4.82□□□□□ -1.64
SQSTM1-206ENST00000466342 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
SQSTM1-206ENST00000466342 KRTAP4-8Q9BYQ9 185 aa4.81□□□□□ -1.64
SQSTM1-206ENST00000466342 CAMK2N1Q7Z7J9 78 aa4.8□□□□□ -1.64
SQSTM1-206ENST00000466342 KRTAP12-1P59990 96 aa4.78□□□□□ -1.64
SQSTM1-206ENST00000466342 SPINT4Q6UDR6 99 aa4.77□□□□□ -1.65
SQSTM1-206ENST00000466342 A8MU10 97 aa4.76□□□□□ -1.65
SQSTM1-206ENST00000466342 PSPHP1O15172 72 aa4.76□□□□□ -1.65
SQSTM1-206ENST00000466342 UQCR11O14957 56 aa4.73□□□□□ -1.65
SQSTM1-206ENST00000466342 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
SQSTM1-206ENST00000466342 KRTAP10-12P60413 245 aa4.7□□□□□ -1.66
SQSTM1-206ENST00000466342 LCE1DQ5T752 114 aa4.67□□□□□ -1.66
SQSTM1-206ENST00000466342 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
SQSTM1-206ENST00000466342 KRTAP5-10Q6L8G5 202 aa4.65□□□□□ -1.67
SQSTM1-206ENST00000466342 AHNAK2Q8IVF2 5795 aa4.65□□□□□ -1.67
SQSTM1-206ENST00000466342 MIR22HGQ0VDD5 57 aa4.63□□□□□ -1.67
SQSTM1-206ENST00000466342 A6NED7 52 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms