RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 RNF213Q63HN8 5207 aa1.92□□□□□ -2.1
RTN4-208ENST00000404909 SPANXA2-OT1Q8N9U9 137 aa1.92□□□□□ -2.1
RTN4-208ENST00000404909 Q1T7F1 81 aa1.92□□□□□ -2.1
RTN4-208ENST00000404909 MUC17Q685J3 4493 aa1.91□□□□□ -2.1
RTN4-208ENST00000404909 LORP23490 312 aaPredicted RBP1.91□□□□□ -2.1
RTN4-208ENST00000404909 SMIM26A0A096LP01 95 aa1.9□□□□□ -2.1
RTN4-208ENST00000404909 KRTAP4-1Q9BYQ7 146 aa1.9□□□□□ -2.11
RTN4-208ENST00000404909 LCE3BQ5TA77 95 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 DMAC1Q96GE9 116 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 ACYP2P14621 99 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 PMAIP1Q13794 54 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 A6NN06 94 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 COA5Q86WW8 74 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 KRTAP3-1Q9BYR8 98 aa1.89□□□□□ -2.11
RTN4-208ENST00000404909 A8MUN3 132 aa1.88□□□□□ -2.11
RTN4-208ENST00000404909 FAT4Q6V0I7 4981 aa1.88□□□□□ -2.11
RTN4-208ENST00000404909 SPTSSBQ8NFR3 76 aa1.87□□□□□ -2.11
RTN4-208ENST00000404909 KTN1-AS1Q86SY8 53 aa1.87□□□□□ -2.11
RTN4-208ENST00000404909 MPLKIPQ8TAP9 179 aa1.87□□□□□ -2.11
RTN4-208ENST00000404909 H1FX-AS1Q4G0G2 97 aa1.85□□□□□ -2.11
RTN4-208ENST00000404909 KRTAP4-8Q9BYQ9 185 aa1.85□□□□□ -2.11
RTN4-208ENST00000404909 KRTAP9-6A0A140TA67 174 aa1.85□□□□□ -2.11
RTN4-208ENST00000404909 S4R3F8 94 aa1.85□□□□□ -2.11
RTN4-208ENST00000404909 LCA10Q71F78 164 aa1.84□□□□□ -2.11
RTN4-208ENST00000404909 FLGP20930 4061 aaPredicted RBP1.84□□□□□ -2.11
RTN4-208ENST00000404909 KRTAP9-2Q9BYQ4 174 aa1.84□□□□□ -2.12
RTN4-208ENST00000404909 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.83□□□□□ -2.12
RTN4-208ENST00000404909 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
RTN4-208ENST00000404909 K7ERS5 55 aa1.81□□□□□ -2.12
RTN4-208ENST00000404909 CSAG1Q6PB30 78 aa1.81□□□□□ -2.12
RTN4-208ENST00000404909 PSPHP1O15172 72 aa1.8□□□□□ -2.12
RTN4-208ENST00000404909 PRR15LQ9BU68 103 aa1.8□□□□□ -2.12
RTN4-208ENST00000404909 Q5VV11 94 aa1.79□□□□□ -2.12
RTN4-208ENST00000404909 A0A1B0GU69 56 aa1.79□□□□□ -2.12
RTN4-208ENST00000404909 LINC01558Q9Y6Z2 57 aa1.79□□□□□ -2.12
RTN4-208ENST00000404909 H3BS24 57 aa1.78□□□□□ -2.12
RTN4-208ENST00000404909 LINC01554Q52M75 96 aa1.78□□□□□ -2.12
RTN4-208ENST00000404909 MT1HP80294 61 aa1.77□□□□□ -2.13
RTN4-208ENST00000404909 ADM2Q7Z4H4 148 aa1.77□□□□□ -2.13
RTN4-208ENST00000404909 P0C880 135 aa1.75□□□□□ -2.13
RTN4-208ENST00000404909 KRTAP4-8A0A0G2JLE6 195 aa1.74□□□□□ -2.13
RTN4-208ENST00000404909 KRTAP10-6P60371 365 aaPredicted RBP1.74□□□□□ -2.13
RTN4-208ENST00000404909 A6NED7 52 aa1.74□□□□□ -2.13
RTN4-208ENST00000404909 CDC42SE1Q9NRR8 79 aa1.74□□□□□ -2.13
RTN4-208ENST00000404909 A0A1B0GU33 70 aa1.74□□□□□ -2.13
RTN4-208ENST00000404909 H0YAA0 97 aa1.73□□□□□ -2.13
RTN4-208ENST00000404909 KRTAP9-9Q9BYP9 154 aa1.73□□□□□ -2.13
RTN4-208ENST00000404909 KRTAP9-4Q9BYQ2 154 aa1.73□□□□□ -2.13
RTN4-208ENST00000404909 UQCR11O14957 56 aa1.72□□□□□ -2.13
RTN4-208ENST00000404909 SPATA8Q6RVD6 105 aa1.72□□□□□ -2.13
RTN4-208ENST00000404909 CAMK2N1Q7Z7J9 78 aa1.72□□□□□ -2.13
RTN4-208ENST00000404909 A8MU10 97 aa1.72□□□□□ -2.13
RTN4-208ENST00000404909 BRK1Q8WUW1 75 aa1.72□□□□□ -2.13
RTN4-208ENST00000404909 R4GN34 69 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 M0QZ58 72 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 MIR22HGQ0VDD5 57 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP10-10P60014 251 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP13-4Q3LI77 160 aa1.71□□□□□ -2.14
RTN4-208ENST00000404909 A0A0D9SG42 100 aa1.7□□□□□ -2.14
RTN4-208ENST00000404909 LCE1DQ5T752 114 aa1.7□□□□□ -2.14
RTN4-208ENST00000404909 MT2AP02795 61 aa1.7□□□□□ -2.14
RTN4-208ENST00000404909 PLAC4Q8WY50 150 aa1.7□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP9-8Q9BYQ0 159 aa1.7□□□□□ -2.14
RTN4-208ENST00000404909 MT1FP04733 61 aa1.69□□□□□ -2.14
RTN4-208ENST00000404909 SPINT4Q6UDR6 99 aa1.69□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP4-7Q9BYR0 210 aa1.68□□□□□ -2.14
RTN4-208ENST00000404909 KRTAP19-1Q8IUB9 90 aa1.67□□□□□ -2.14
RTN4-208ENST00000404909 CRIPTQ9P021 101 aa1.67□□□□□ -2.14
RTN4-208ENST00000404909 A0A0A0MQY5 61 aa1.65□□□□□ -2.14
RTN4-208ENST00000404909 USH2AO75445 5202 aa1.64□□□□□ -2.15
RTN4-208ENST00000404909 SPRR2GQ9BYE4 73 aa1.64□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP12-2P59991 146 aa1.64□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP9-3Q9BYQ3 159 aa1.64□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP12-1P59990 96 aa1.63□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP5-3Q6L8H2 238 aa1.63□□□□□ -2.15
RTN4-208ENST00000404909 ROMO1P60602 79 aa1.63□□□□□ -2.15
RTN4-208ENST00000404909 FSIP2Q5CZC0 6907 aa1.62□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP4-9Q9BYQ8 210 aa1.62□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP15-1Q3LI76 137 aa1.61□□□□□ -2.15
RTN4-208ENST00000404909 KRTAP19-8Q3LI54 63 aa1.59□□□□□ -2.15
RTN4-208ENST00000404909 MT1BP07438 61 aa1.59□□□□□ -2.16
RTN4-208ENST00000404909 PRO2289Q9P1D8 64 aa1.59□□□□□ -2.16
RTN4-208ENST00000404909 KRTAP4-2Q9BYR5 136 aa1.58□□□□□ -2.16
RTN4-208ENST00000404909 SSPOA2VEC9 5147 aa1.57□□□□□ -2.16
RTN4-208ENST00000404909 KRTAP4-11Q9BYQ6 195 aa1.55□□□□□ -2.16
RTN4-208ENST00000404909 KRTAP25-1Q3LHN0 102 aa1.55□□□□□ -2.16
RTN4-208ENST00000404909 C10orf95Q9H7T3 257 aa1.55□□□□□ -2.16
RTN4-208ENST00000404909 LCE4AQ5TA78 99 aa1.54□□□□□ -2.16
RTN4-208ENST00000404909 MT1XP80297 61 aa1.54□□□□□ -2.16
RTN4-208ENST00000404909 KRTAP10-5P60370 271 aa1.53□□□□□ -2.16
RTN4-208ENST00000404909 KRTAP19-4Q3LI73 84 aa1.53□□□□□ -2.16
RTN4-208ENST00000404909 PRAC1Q96KF2 57 aa1.53□□□□□ -2.16
RTN4-208ENST00000404909 TNP1P09430 55 aa1.51□□□□□ -2.17
RTN4-208ENST00000404909 KMT2DO14686 5537 aa1.51□□□□□ -2.17
RTN4-208ENST00000404909 FCGBPQ9Y6R7 5405 aaPredicted RBP1.5□□□□□ -2.17
RTN4-208ENST00000404909 KRTAP19-6Q3LI70 58 aa1.5□□□□□ -2.17
RTN4-208ENST00000404909 KRTAP10-7P60409 375 aaPredicted RBP1.49□□□□□ -2.17
RTN4-208ENST00000404909 LCE5AQ5TCM9 118 aa1.48□□□□□ -2.17
RTN4-208ENST00000404909 CRCT1Q9UGL9 99 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms