RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 KRTAP19-2Q3LHN2 52 aa10.12□□□□□ -0.79
HDDC3-202ENST00000394272 RNF213Q63HN8 5207 aa10.11□□□□□ -0.79
HDDC3-202ENST00000394272 LCA10Q71F78 164 aa10.05□□□□□ -0.8
HDDC3-202ENST00000394272 S4R3F8 94 aa10.05□□□□□ -0.8
HDDC3-202ENST00000394272 V9GYY9 64 aa10.04□□□□□ -0.8
HDDC3-202ENST00000394272 KRTAP3-3Q9BYR6 98 aa10.03□□□□□ -0.8
HDDC3-202ENST00000394272 SPTSSBQ8NFR3 76 aa10□□□□□ -0.81
HDDC3-202ENST00000394272 FLGP20930 4061 aaPredicted RBP9.99□□□□□ -0.81
HDDC3-202ENST00000394272 PSPHP1O15172 72 aa9.96□□□□□ -0.81
HDDC3-202ENST00000394272 LINC01558Q9Y6Z2 57 aa9.93□□□□□ -0.82
HDDC3-202ENST00000394272 BRK1Q8WUW1 75 aa9.89□□□□□ -0.83
HDDC3-202ENST00000394272 LCE2CQ5TA81 110 aa9.89□□□□□ -0.83
HDDC3-202ENST00000394272 PRO0628Q9UI54 55 aa9.88□□□□□ -0.83
HDDC3-202ENST00000394272 FAT4Q6V0I7 4981 aa9.87□□□□□ -0.83
HDDC3-202ENST00000394272 Q5VV11 94 aa9.87□□□□□ -0.83
HDDC3-202ENST00000394272 PRR15LQ9BU68 103 aa9.87□□□□□ -0.83
HDDC3-202ENST00000394272 CSAG1Q6PB30 78 aa9.83□□□□□ -0.84
HDDC3-202ENST00000394272 A0A1B0GU69 56 aa9.77□□□□□ -0.85
HDDC3-202ENST00000394272 SEC61GP60059 68 aa9.71□□□□□ -0.85
HDDC3-202ENST00000394272 MT1HP80294 61 aa9.68□□□□□ -0.86
HDDC3-202ENST00000394272 KRTAP3-2Q9BYR7 98 aa9.65□□□□□ -0.86
HDDC3-202ENST00000394272 H0YAA0 97 aa9.64□□□□□ -0.87
HDDC3-202ENST00000394272 A6NED7 52 aa9.64□□□□□ -0.87
HDDC3-202ENST00000394272 KRTAP10-6P60371 365 aaPredicted RBP9.64□□□□□ -0.87
HDDC3-202ENST00000394272 ADM2Q7Z4H4 148 aa9.6□□□□□ -0.87
HDDC3-202ENST00000394272 A8MU10 97 aa9.58□□□□□ -0.88
HDDC3-202ENST00000394272 P0C880 135 aa9.56□□□□□ -0.88
HDDC3-202ENST00000394272 M0R2T5 61 aa9.53□□□□□ -0.88
HDDC3-202ENST00000394272 CDC42SE1Q9NRR8 79 aa9.53□□□□□ -0.88
HDDC3-202ENST00000394272 A0A1B0GU33 70 aa9.51□□□□□ -0.89
HDDC3-202ENST00000394272 UQCR11O14957 56 aa9.47□□□□□ -0.89
HDDC3-202ENST00000394272 KRTAP13-4Q3LI77 160 aa9.37□□□□□ -0.91
HDDC3-202ENST00000394272 MIR22HGQ0VDD5 57 aa9.36□□□□□ -0.91
HDDC3-202ENST00000394272 LCE2AQ5TA79 106 aaPredicted RBP9.36□□□□□ -0.91
HDDC3-202ENST00000394272 LORP23490 312 aaPredicted RBP9.35□□□□□ -0.91
HDDC3-202ENST00000394272 SPATA8Q6RVD6 105 aa9.35□□□□□ -0.91
HDDC3-202ENST00000394272 PMAIP1Q13794 54 aa9.34□□□□□ -0.91
HDDC3-202ENST00000394272 KRTAP9-8Q9BYQ0 159 aa9.33□□□□□ -0.92
HDDC3-202ENST00000394272 M0QZ58 72 aa9.3□□□□□ -0.92
HDDC3-202ENST00000394272 MT2AP02795 61 aa9.28□□□□□ -0.92
HDDC3-202ENST00000394272 R4GN34 69 aa9.25□□□□□ -0.93
HDDC3-202ENST00000394272 A6NN06 94 aa9.24□□□□□ -0.93
HDDC3-202ENST00000394272 MT1FP04733 61 aa9.23□□□□□ -0.93
HDDC3-202ENST00000394272 CRIPTQ9P021 101 aa9.22□□□□□ -0.93
HDDC3-202ENST00000394272 KRTAP10-10P60014 251 aa9.17□□□□□ -0.94
HDDC3-202ENST00000394272 A0A0D9SG42 100 aa9.14□□□□□ -0.95
HDDC3-202ENST00000394272 KTN1-AS1Q86SY8 53 aa9.09□□□□□ -0.95
HDDC3-202ENST00000394272 SPRR2GQ9BYE4 73 aa9.08□□□□□ -0.96
HDDC3-202ENST00000394272 LINC01554Q52M75 96 aa9.07□□□□□ -0.96
HDDC3-202ENST00000394272 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
HDDC3-202ENST00000394272 KRTAP12-1P59990 96 aa9□□□□□ -0.97
HDDC3-202ENST00000394272 KRTAP9-3Q9BYQ3 159 aa8.99□□□□□ -0.97
HDDC3-202ENST00000394272 KRTAP12-2P59991 146 aa8.97□□□□□ -0.97
HDDC3-202ENST00000394272 SPINT4Q6UDR6 99 aa8.92□□□□□ -0.98
HDDC3-202ENST00000394272 K7ERS5 55 aa8.91□□□□□ -0.98
HDDC3-202ENST00000394272 KRTAP19-8Q3LI54 63 aa8.85□□□□□ -0.99
HDDC3-202ENST00000394272 PRAC1Q96KF2 57 aa8.75□□□□□ -1.01
HDDC3-202ENST00000394272 LCE2BO14633 110 aa8.74□□□□□ -1.01
HDDC3-202ENST00000394272 MT1BP07438 61 aa8.74□□□□□ -1.01
HDDC3-202ENST00000394272 PLAC4Q8WY50 150 aa8.71□□□□□ -1.01
HDDC3-202ENST00000394272 CAMK2N1Q7Z7J9 78 aa8.65□□□□□ -1.02
HDDC3-202ENST00000394272 USH2AO75445 5202 aa8.59□□□□□ -1.03
HDDC3-202ENST00000394272 ROMO1P60602 79 aa8.57□□□□□ -1.04
HDDC3-202ENST00000394272 C10orf95Q9H7T3 257 aa8.52□□□□□ -1.05
HDDC3-202ENST00000394272 LCE2DQ5TA82 110 aaPredicted RBP8.49□□□□□ -1.05
HDDC3-202ENST00000394272 MT1XP80297 61 aa8.44□□□□□ -1.06
HDDC3-202ENST00000394272 KRTAP10-5P60370 271 aa8.42□□□□□ -1.06
HDDC3-202ENST00000394272 KRTAP25-1Q3LHN0 102 aa8.4□□□□□ -1.07
HDDC3-202ENST00000394272 SSPOA2VEC9 5147 aa8.33□□□□□ -1.08
HDDC3-202ENST00000394272 FSIP2Q5CZC0 6907 aa8.31□□□□□ -1.08
HDDC3-202ENST00000394272 PRO2289Q9P1D8 64 aa8.31□□□□□ -1.08
HDDC3-202ENST00000394272 KRTAP9-2Q9BYQ4 174 aa8.29□□□□□ -1.08
HDDC3-202ENST00000394272 TNP1P09430 55 aa8.23□□□□□ -1.09
HDDC3-202ENST00000394272 KRTAP19-6Q3LI70 58 aa8.22□□□□□ -1.09
HDDC3-202ENST00000394272 KRTAP10-7P60409 375 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-202ENST00000394272 KRTAP10-12P60413 245 aa8□□□□□ -1.13
HDDC3-202ENST00000394272 KRTAP23-1A1A580 65 aa7.99□□□□□ -1.13
HDDC3-202ENST00000394272 FCGBPQ9Y6R7 5405 aaPredicted RBP7.97□□□□□ -1.13
HDDC3-202ENST00000394272 PP632Q6XCG6 107 aa7.96□□□□□ -1.13
HDDC3-202ENST00000394272 CRCT1Q9UGL9 99 aa7.96□□□□□ -1.13
HDDC3-202ENST00000394272 LCE3AQ5TA76 89 aa7.92□□□□□ -1.14
HDDC3-202ENST00000394272 KMT2DO14686 5537 aa7.89□□□□□ -1.15
HDDC3-202ENST00000394272 KRTAP4-8A0A0G2JLE6 195 aa7.79□□□□□ -1.16
HDDC3-202ENST00000394272 KRTAP4-8Q9BYQ9 185 aa7.79□□□□□ -1.16
HDDC3-202ENST00000394272 KRTAP8-1Q8IUC2 63 aa7.77□□□□□ -1.17
HDDC3-202ENST00000394272 KRTAP9-6A0A140TA67 174 aa7.68□□□□□ -1.18
HDDC3-202ENST00000394272 KRTAP12-3P60328 96 aa7.6□□□□□ -1.19
HDDC3-202ENST00000394272 MACF1Q9UPN3 7388 aaKnown RBP7.6□□□□□ -1.19
HDDC3-202ENST00000394272 KRTAP19-5Q3LI72 72 aa7.6□□□□□ -1.19
HDDC3-202ENST00000394272 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
HDDC3-202ENST00000394272 KRTAP19-7Q3SYF9 63 aa7.54□□□□□ -1.2
HDDC3-202ENST00000394272 SYNE2Q8WXH0 6885 aaKnown RBP7.41□□□□□ -1.22
HDDC3-202ENST00000394272 MT1EP04732 61 aa7.4□□□□□ -1.23
HDDC3-202ENST00000394272 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.38□□□□□ -1.23
HDDC3-202ENST00000394272 MUC12Q9UKN1 5478 aa7.29□□□□□ -1.24
HDDC3-202ENST00000394272 SPRR2FQ96RM1 72 aa7.28□□□□□ -1.24
HDDC3-202ENST00000394272 KRTAP5-9P26371 169 aa7.25□□□□□ -1.25
HDDC3-202ENST00000394272 MT1LQ93083 61 aa7.24□□□□□ -1.25
HDDC3-202ENST00000394272 NDUFAF8A1L188 74 aa7.19□□□□□ -1.26
HDDC3-202ENST00000394272 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms