RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 H1FX-AS1Q4G0G2 97 aa13.41□□□□□ -0.26
MSX1-201ENST00000382723 RNF213Q63HN8 5207 aa13.39□□□□□ -0.27
MSX1-201ENST00000382723 KRTAP19-2Q3LHN2 52 aa13.33□□□□□ -0.28
MSX1-201ENST00000382723 BRK1Q8WUW1 75 aa13.31□□□□□ -0.28
MSX1-201ENST00000382723 S4R3F8 94 aa13.29□□□□□ -0.28
MSX1-201ENST00000382723 V9GYY9 64 aa13.29□□□□□ -0.28
MSX1-201ENST00000382723 PSPHP1O15172 72 aa13.26□□□□□ -0.29
MSX1-201ENST00000382723 LCA10Q71F78 164 aa13.26□□□□□ -0.29
MSX1-201ENST00000382723 KRTAP3-3Q9BYR6 98 aa13.17□□□□□ -0.3
MSX1-201ENST00000382723 Q5VV11 94 aa13.14□□□□□ -0.31
MSX1-201ENST00000382723 SPTSSBQ8NFR3 76 aa13.14□□□□□ -0.31
MSX1-201ENST00000382723 PRR15LQ9BU68 103 aa13.12□□□□□ -0.31
MSX1-201ENST00000382723 LCE2CQ5TA81 110 aa13.1□□□□□ -0.31
MSX1-201ENST00000382723 LINC01558Q9Y6Z2 57 aa13.1□□□□□ -0.31
MSX1-201ENST00000382723 FLGP20930 4061 aaPredicted RBP13□□□□□ -0.33
MSX1-201ENST00000382723 CSAG1Q6PB30 78 aa13□□□□□ -0.33
MSX1-201ENST00000382723 FAT4Q6V0I7 4981 aa12.93□□□□□ -0.34
MSX1-201ENST00000382723 MT1HP80294 61 aa12.87□□□□□ -0.35
MSX1-201ENST00000382723 A0A1B0GU69 56 aa12.82□□□□□ -0.36
MSX1-201ENST00000382723 PMAIP1Q13794 54 aa12.81□□□□□ -0.36
MSX1-201ENST00000382723 M0R2T5 61 aa12.8□□□□□ -0.36
MSX1-201ENST00000382723 A8MU10 97 aa12.8□□□□□ -0.36
MSX1-201ENST00000382723 A6NED7 52 aa12.79□□□□□ -0.36
MSX1-201ENST00000382723 SEC61GP60059 68 aa12.78□□□□□ -0.36
MSX1-201ENST00000382723 ADM2Q7Z4H4 148 aa12.7□□□□□ -0.38
MSX1-201ENST00000382723 KRTAP3-2Q9BYR7 98 aa12.66□□□□□ -0.38
MSX1-201ENST00000382723 CDC42SE1Q9NRR8 79 aa12.64□□□□□ -0.39
MSX1-201ENST00000382723 H0YAA0 97 aa12.62□□□□□ -0.39
MSX1-201ENST00000382723 KRTAP10-6P60371 365 aaPredicted RBP12.62□□□□□ -0.39
MSX1-201ENST00000382723 P0C880 135 aa12.6□□□□□ -0.39
MSX1-201ENST00000382723 A0A1B0GU33 70 aa12.48□□□□□ -0.41
MSX1-201ENST00000382723 KTN1-AS1Q86SY8 53 aa12.47□□□□□ -0.41
MSX1-201ENST00000382723 LCE2AQ5TA79 106 aaPredicted RBP12.45□□□□□ -0.42
MSX1-201ENST00000382723 UQCR11O14957 56 aa12.41□□□□□ -0.42
MSX1-201ENST00000382723 SPATA8Q6RVD6 105 aa12.39□□□□□ -0.43
MSX1-201ENST00000382723 LORP23490 312 aaPredicted RBP12.37□□□□□ -0.43
MSX1-201ENST00000382723 KRTAP9-8Q9BYQ0 159 aa12.36□□□□□ -0.43
MSX1-201ENST00000382723 A6NN06 94 aa12.35□□□□□ -0.43
MSX1-201ENST00000382723 MIR22HGQ0VDD5 57 aa12.34□□□□□ -0.43
MSX1-201ENST00000382723 MT2AP02795 61 aa12.32□□□□□ -0.44
MSX1-201ENST00000382723 KRTAP13-4Q3LI77 160 aa12.29□□□□□ -0.44
MSX1-201ENST00000382723 MT1FP04733 61 aa12.26□□□□□ -0.45
MSX1-201ENST00000382723 KRTAP10-10P60014 251 aa12.25□□□□□ -0.45
MSX1-201ENST00000382723 R4GN34 69 aa12.25□□□□□ -0.45
MSX1-201ENST00000382723 M0QZ58 72 aa12.23□□□□□ -0.45
MSX1-201ENST00000382723 CRIPTQ9P021 101 aa12.15□□□□□ -0.46
MSX1-201ENST00000382723 A0A0D9SG42 100 aa12.11□□□□□ -0.47
MSX1-201ENST00000382723 LINC01554Q52M75 96 aa12.08□□□□□ -0.48
MSX1-201ENST00000382723 KRTAP19-1Q8IUB9 90 aa11.96□□□□□ -0.49
MSX1-201ENST00000382723 SPRR2GQ9BYE4 73 aa11.96□□□□□ -0.5
MSX1-201ENST00000382723 KRTAP9-3Q9BYQ3 159 aa11.92□□□□□ -0.5
MSX1-201ENST00000382723 SPINT4Q6UDR6 99 aa11.81□□□□□ -0.52
MSX1-201ENST00000382723 KRTAP12-1P59990 96 aa11.79□□□□□ -0.52
MSX1-201ENST00000382723 KRTAP12-2P59991 146 aa11.78□□□□□ -0.52
MSX1-201ENST00000382723 K7ERS5 55 aa11.7□□□□□ -0.54
MSX1-201ENST00000382723 KRTAP19-8Q3LI54 63 aa11.65□□□□□ -0.54
MSX1-201ENST00000382723 LCE2BO14633 110 aa11.63□□□□□ -0.55
MSX1-201ENST00000382723 PRAC1Q96KF2 57 aa11.62□□□□□ -0.55
MSX1-201ENST00000382723 PLAC4Q8WY50 150 aa11.57□□□□□ -0.56
MSX1-201ENST00000382723 MT1BP07438 61 aa11.55□□□□□ -0.56
MSX1-201ENST00000382723 CAMK2N1Q7Z7J9 78 aa11.47□□□□□ -0.57
MSX1-201ENST00000382723 USH2AO75445 5202 aa11.35□□□□□ -0.59
MSX1-201ENST00000382723 LCE2DQ5TA82 110 aaPredicted RBP11.34□□□□□ -0.59
MSX1-201ENST00000382723 ROMO1P60602 79 aa11.29□□□□□ -0.6
MSX1-201ENST00000382723 C10orf95Q9H7T3 257 aa11.17□□□□□ -0.62
MSX1-201ENST00000382723 MT1XP80297 61 aa11.15□□□□□ -0.62
MSX1-201ENST00000382723 KRTAP25-1Q3LHN0 102 aa11.13□□□□□ -0.63
MSX1-201ENST00000382723 KRTAP10-5P60370 271 aa11.13□□□□□ -0.63
MSX1-201ENST00000382723 KRTAP9-2Q9BYQ4 174 aa11.05□□□□□ -0.64
MSX1-201ENST00000382723 PRO2289Q9P1D8 64 aa11.03□□□□□ -0.64
MSX1-201ENST00000382723 FSIP2Q5CZC0 6907 aa11.02□□□□□ -0.65
MSX1-201ENST00000382723 SSPOA2VEC9 5147 aa10.99□□□□□ -0.65
MSX1-201ENST00000382723 KRTAP19-6Q3LI70 58 aa10.92□□□□□ -0.66
MSX1-201ENST00000382723 TNP1P09430 55 aa10.85□□□□□ -0.67
MSX1-201ENST00000382723 H3BS24 57 aa10.77□□□□□ -0.69
MSX1-201ENST00000382723 KRTAP10-7P60409 375 aaPredicted RBP10.72□□□□□ -0.69
MSX1-201ENST00000382723 CRCT1Q9UGL9 99 aa10.62□□□□□ -0.71
MSX1-201ENST00000382723 FCGBPQ9Y6R7 5405 aaPredicted RBP10.58□□□□□ -0.72
MSX1-201ENST00000382723 KRTAP10-12P60413 245 aa10.54□□□□□ -0.72
MSX1-201ENST00000382723 LCE3AQ5TA76 89 aa10.46□□□□□ -0.74
MSX1-201ENST00000382723 PP632Q6XCG6 107 aa10.38□□□□□ -0.75
MSX1-201ENST00000382723 KRTAP23-1A1A580 65 aa10.37□□□□□ -0.75
MSX1-201ENST00000382723 KRTAP4-8A0A0G2JLE6 195 aa10.36□□□□□ -0.75
MSX1-201ENST00000382723 KRTAP4-8Q9BYQ9 185 aa10.36□□□□□ -0.75
MSX1-201ENST00000382723 KMT2DO14686 5537 aa10.35□□□□□ -0.75
MSX1-201ENST00000382723 KRTAP9-6A0A140TA67 174 aa10.23□□□□□ -0.77
MSX1-201ENST00000382723 KRTAP8-1Q8IUC2 63 aa10.16□□□□□ -0.78
MSX1-201ENST00000382723 KRTAP15-1Q3LI76 137 aa10.15□□□□□ -0.78
MSX1-201ENST00000382723 KRTAP19-5Q3LI72 72 aa10.06□□□□□ -0.8
MSX1-201ENST00000382723 MACF1Q9UPN3 7388 aaKnown RBP10.06□□□□□ -0.8
MSX1-201ENST00000382723 KRTAP12-3P60328 96 aa10.02□□□□□ -0.81
MSX1-201ENST00000382723 NDUFAF8A1L188 74 aa9.94□□□□□ -0.82
MSX1-201ENST00000382723 KRTAP19-7Q3SYF9 63 aa9.94□□□□□ -0.82
MSX1-201ENST00000382723 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.84□□□□□ -0.83
MSX1-201ENST00000382723 SYNE2Q8WXH0 6885 aaKnown RBP9.8□□□□□ -0.84
MSX1-201ENST00000382723 MT1EP04732 61 aa9.78□□□□□ -0.84
MSX1-201ENST00000382723 SPRR2FQ96RM1 72 aa9.74□□□□□ -0.85
MSX1-201ENST00000382723 KRTAP5-9P26371 169 aa9.6□□□□□ -0.87
MSX1-201ENST00000382723 MUC12Q9UKN1 5478 aa9.6□□□□□ -0.87
MSX1-201ENST00000382723 MT1LQ93083 61 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms