RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CSAG1Q6PB30 78 aa7.79□□□□□ -1.16
HMGN4-201ENST00000377575 LCA10Q71F78 164 aa7.79□□□□□ -1.16
HMGN4-201ENST00000377575 FAM236AA0A1B0GUQ0 79 aa7.78□□□□□ -1.16
HMGN4-201ENST00000377575 FAM236BA0A1B0GV22 79 aa7.78□□□□□ -1.16
HMGN4-201ENST00000377575 KRTAP19-6Q3LI70 58 aa7.78□□□□□ -1.16
HMGN4-201ENST00000377575 UQCRQO14949 82 aa7.75□□□□□ -1.17
HMGN4-201ENST00000377575 ATOX1O00244 68 aa7.73□□□□□ -1.17
HMGN4-201ENST00000377575 LINC00643Q86TS7 51 aa7.73□□□□□ -1.17
HMGN4-201ENST00000377575 H0Y9P7 68 aa7.71□□□□□ -1.18
HMGN4-201ENST00000377575 KRTAP4-9Q9BYQ8 210 aa7.69□□□□□ -1.18
HMGN4-201ENST00000377575 A0A087WVE0 104 aa7.68□□□□□ -1.18
HMGN4-201ENST00000377575 A0A1B0GV90 55 aa7.68□□□□□ -1.18
HMGN4-201ENST00000377575 KLKP1Q107X0 134 aa7.6□□□□□ -1.19
HMGN4-201ENST00000377575 MACF1Q9UPN3 7388 aaKnown RBP7.6□□□□□ -1.19
HMGN4-201ENST00000377575 J3QR89 54 aa7.59□□□□□ -1.19
HMGN4-201ENST00000377575 SPRR2GQ9BYE4 73 aa7.59□□□□□ -1.19
HMGN4-201ENST00000377575 A8MUN3 132 aa7.57□□□□□ -1.2
HMGN4-201ENST00000377575 MP68P56378 58 aa7.57□□□□□ -1.2
HMGN4-201ENST00000377575 Q5VV11 94 aa7.57□□□□□ -1.2
HMGN4-201ENST00000377575 LINC00208Q96KT6 92 aa7.57□□□□□ -1.2
HMGN4-201ENST00000377575 OCR1Q9BZK8 76 aa7.56□□□□□ -1.2
HMGN4-201ENST00000377575 NDUFC1O43677 76 aa7.55□□□□□ -1.2
HMGN4-201ENST00000377575 IMUPQ9GZP8 106 aa7.54□□□□□ -1.2
HMGN4-201ENST00000377575 KRTAP19-8Q3LI54 63 aa7.53□□□□□ -1.2
HMGN4-201ENST00000377575 CRIPTQ9P021 101 aa7.52□□□□□ -1.21
HMGN4-201ENST00000377575 MT1BP07438 61 aa7.51□□□□□ -1.21
HMGN4-201ENST00000377575 SYNE2Q8WXH0 6885 aaKnown RBP7.5□□□□□ -1.21
HMGN4-201ENST00000377575 H0YAA0 97 aa7.48□□□□□ -1.21
HMGN4-201ENST00000377575 H3BPC8 53 aa7.47□□□□□ -1.21
HMGN4-201ENST00000377575 LCE5AQ5TCM9 118 aa7.47□□□□□ -1.21
HMGN4-201ENST00000377575 KRTAP4-2Q9BYR5 136 aa7.47□□□□□ -1.21
HMGN4-201ENST00000377575 A6NN06 94 aa7.46□□□□□ -1.22
HMGN4-201ENST00000377575 SCGB1A1P11684 91 aa7.45□□□□□ -1.22
HMGN4-201ENST00000377575 KRTAP4-11Q9BYQ6 195 aa7.45□□□□□ -1.22
HMGN4-201ENST00000377575 ADM2Q7Z4H4 148 aa7.38□□□□□ -1.23
HMGN4-201ENST00000377575 KRTAP6-3Q3LI67 103 aa7.37□□□□□ -1.23
HMGN4-201ENST00000377575 KRTAP10-5P60370 271 aa7.36□□□□□ -1.23
HMGN4-201ENST00000377575 DMAC1Q96GE9 116 aa7.35□□□□□ -1.23
HMGN4-201ENST00000377575 K7ERU9 68 aa7.29□□□□□ -1.24
HMGN4-201ENST00000377575 C20orf197Q8N268 126 aa7.27□□□□□ -1.25
HMGN4-201ENST00000377575 MT-ATP8P03928 68 aa7.26□□□□□ -1.25
HMGN4-201ENST00000377575 SMIM20Q8N5G0 67 aa7.26□□□□□ -1.25
HMGN4-201ENST00000377575 TRAV7A0A075B6U4 112 aa7.22□□□□□ -1.25
HMGN4-201ENST00000377575 R4GN34 69 aa7.22□□□□□ -1.25
HMGN4-201ENST00000377575 P0C880 135 aa7.19□□□□□ -1.26
HMGN4-201ENST00000377575 ACYP2P14621 99 aa7.18□□□□□ -1.26
HMGN4-201ENST00000377575 PLAC4Q8WY50 150 aa7.16□□□□□ -1.26
HMGN4-201ENST00000377575 PRO2289Q9P1D8 64 aa7.16□□□□□ -1.26
HMGN4-201ENST00000377575 M0QZ58 72 aa7.15□□□□□ -1.26
HMGN4-201ENST00000377575 SPTSSBQ8NFR3 76 aa7.13□□□□□ -1.27
HMGN4-201ENST00000377575 CHKB-CPT1BH3BT56 60 aa7.07□□□□□ -1.28
HMGN4-201ENST00000377575 MT1XP80297 61 aa7.06□□□□□ -1.28
HMGN4-201ENST00000377575 SNURFQ9Y675 71 aa7.06□□□□□ -1.28
HMGN4-201ENST00000377575 KRTAP5-9P26371 169 aa7.05□□□□□ -1.28
HMGN4-201ENST00000377575 LINC01554Q52M75 96 aa7.04□□□□□ -1.28
HMGN4-201ENST00000377575 NEBP20929 6669 aa7.03□□□□□ -1.28
HMGN4-201ENST00000377575 MUC12Q9UKN1 5478 aa7.03□□□□□ -1.28
HMGN4-201ENST00000377575 SERP2Q8N6R1 65 aa6.99□□□□□ -1.29
HMGN4-201ENST00000377575 SPANXA2-OT1Q8N9U9 137 aa6.99□□□□□ -1.29
HMGN4-201ENST00000377575 KRTAP12-2P59991 146 aa6.92□□□□□ -1.3
HMGN4-201ENST00000377575 KMT2DO14686 5537 aa6.91□□□□□ -1.3
HMGN4-201ENST00000377575 SPRR2FQ96RM1 72 aa6.87□□□□□ -1.31
HMGN4-201ENST00000377575 KRTAP8-1Q8IUC2 63 aa6.86□□□□□ -1.31
HMGN4-201ENST00000377575 MDN1Q9NU22 5596 aa6.84□□□□□ -1.31
HMGN4-201ENST00000377575 KRTAP20-1Q3LI63 56 aa6.83□□□□□ -1.32
HMGN4-201ENST00000377575 KRTAP23-1A1A580 65 aa6.82□□□□□ -1.32
HMGN4-201ENST00000377575 COA5Q86WW8 74 aa6.79□□□□□ -1.32
HMGN4-201ENST00000377575 COX7CP15954 63 aa6.77□□□□□ -1.33
HMGN4-201ENST00000377575 SPRR2EP22531 72 aa6.76□□□□□ -1.33
HMGN4-201ENST00000377575 SPRR2BP35325 72 aa6.76□□□□□ -1.33
HMGN4-201ENST00000377575 SPRR2AP35326 72 aa6.76□□□□□ -1.33
HMGN4-201ENST00000377575 KRTAP10-7P60409 375 aaPredicted RBP6.73□□□□□ -1.33
HMGN4-201ENST00000377575 KRTAP10-12P60413 245 aa6.72□□□□□ -1.33
HMGN4-201ENST00000377575 KRTAP13-4Q3LI77 160 aa6.72□□□□□ -1.33
HMGN4-201ENST00000377575 SEC61GP60059 68 aa6.71□□□□□ -1.34
HMGN4-201ENST00000377575 SERP1Q9Y6X1 66 aa6.68□□□□□ -1.34
HMGN4-201ENST00000377575 H7BZZ5 65 aa6.66□□□□□ -1.34
HMGN4-201ENST00000377575 LCE1AQ5T7P2 110 aa6.65□□□□□ -1.34
HMGN4-201ENST00000377575 CAMK2N1Q7Z7J9 78 aa6.65□□□□□ -1.34
HMGN4-201ENST00000377575 KRTAP2-3P0C7H8 128 aa6.64□□□□□ -1.35
HMGN4-201ENST00000377575 KRTAP2-4Q9BYR9 128 aa6.64□□□□□ -1.35
HMGN4-201ENST00000377575 CYSTM1Q9H1C7 97 aa6.62□□□□□ -1.35
HMGN4-201ENST00000377575 KRTAP15-1Q3LI76 137 aa6.56□□□□□ -1.36
HMGN4-201ENST00000377575 A0A0D9SG42 100 aa6.55□□□□□ -1.36
HMGN4-201ENST00000377575 ANAPC13Q9BS18 74 aa6.55□□□□□ -1.36
HMGN4-201ENST00000377575 A0A1B0GU33 70 aa6.54□□□□□ -1.36
HMGN4-201ENST00000377575 SPRR2DP22532 72 aa6.54□□□□□ -1.36
HMGN4-201ENST00000377575 SPATA8Q6RVD6 105 aa6.52□□□□□ -1.37
HMGN4-201ENST00000377575 KRTAP5-3Q6L8H2 238 aa6.47□□□□□ -1.37
HMGN4-201ENST00000377575 A0A1B0GU69 56 aa6.46□□□□□ -1.38
HMGN4-201ENST00000377575 SPINT4Q6UDR6 99 aa6.46□□□□□ -1.38
HMGN4-201ENST00000377575 KRTAP2-2Q9BYT5 123 aa6.44□□□□□ -1.38
HMGN4-201ENST00000377575 KRTAP2-1Q9BYU5 128 aa6.44□□□□□ -1.38
HMGN4-201ENST00000377575 KRTAP12-1P59990 96 aa6.4□□□□□ -1.38
HMGN4-201ENST00000377575 SMIM26A0A096LP01 95 aa6.39□□□□□ -1.39
HMGN4-201ENST00000377575 CCDC179H3BU77 68 aa6.39□□□□□ -1.39
HMGN4-201ENST00000377575 ATP5EP56381 51 aaPredicted RBP6.39□□□□□ -1.39
HMGN4-201ENST00000377575 PRR15LQ9BU68 103 aa6.31□□□□□ -1.4
HMGN4-201ENST00000377575 KRTAP19-7Q3SYF9 63 aa6.3□□□□□ -1.4
HMGN4-201ENST00000377575 A8MU10 97 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms