RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ANAPC11Q9NYG5 84 aa3.16□□□□□ -1.9
CSDE1-202ENST00000339438 IGKV2-30P06310 120 aa3.16□□□□□ -1.9
CSDE1-202ENST00000339438 KRTAP16-1A8MUX0 517 aa3.15□□□□□ -1.9
CSDE1-202ENST00000339438 KRTAP10-1P60331 282 aa3.15□□□□□ -1.91
CSDE1-202ENST00000339438 IGLV9-49A0A0B4J1Y8 123 aa3.14□□□□□ -1.91
CSDE1-202ENST00000339438 CIRBP-AS1Q8TBR5 109 aa3.14□□□□□ -1.91
CSDE1-202ENST00000339438 FLG2Q5D862 2391 aaPredicted RBP3.14□□□□□ -1.91
CSDE1-202ENST00000339438 SPACA4Q8TDM5 124 aa3.13□□□□□ -1.91
CSDE1-202ENST00000339438 FAT4Q6V0I7 4981 aa3.13□□□□□ -1.91
CSDE1-202ENST00000339438 PSORS1C2Q9UIG4 136 aa3.13□□□□□ -1.91
CSDE1-202ENST00000339438 KRTAP19-2Q3LHN2 52 aa3.1□□□□□ -1.91
CSDE1-202ENST00000339438 IGKV2D-30A0A075B6S6 120 aa3.09□□□□□ -1.91
CSDE1-202ENST00000339438 FAM229AH3BQW9 127 aa3.08□□□□□ -1.92
CSDE1-202ENST00000339438 KRTAP15-1Q3LI76 137 aa3.08□□□□□ -1.92
CSDE1-202ENST00000339438 TYMSOSQ8TAI1 123 aa3.08□□□□□ -1.92
CSDE1-202ENST00000339438 Q8N1X5 172 aa3.07□□□□□ -1.92
CSDE1-202ENST00000339438 DMBT1Q9UGM3 2413 aaPredicted RBP3.07□□□□□ -1.92
CSDE1-202ENST00000339438 CRIPTQ9P021 101 aa3.06□□□□□ -1.92
CSDE1-202ENST00000339438 KRTAP10-8P60410 259 aa3.05□□□□□ -1.92
CSDE1-202ENST00000339438 TPRXLQ17RH7 258 aa3.05□□□□□ -1.92
CSDE1-202ENST00000339438 SPINK6Q6UWN8 80 aa3.05□□□□□ -1.92
CSDE1-202ENST00000339438 KRTAP1-4P0C5Y4 121 aa3.03□□□□□ -1.92
CSDE1-202ENST00000339438 C20orf166-AS1Q96NR2 134 aa3.02□□□□□ -1.93
CSDE1-202ENST00000339438 KRTAP3-1Q9BYR8 98 aa3.02□□□□□ -1.93
CSDE1-202ENST00000339438 H1FX-AS1Q4G0G2 97 aa3.02□□□□□ -1.93
CSDE1-202ENST00000339438 A0A1B0GU33 70 aa3.01□□□□□ -1.93
CSDE1-202ENST00000339438 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
CSDE1-202ENST00000339438 LCE2AQ5TA79 106 aaPredicted RBP3□□□□□ -1.93
CSDE1-202ENST00000339438 SPINK1P00995 79 aa2.99□□□□□ -1.93
CSDE1-202ENST00000339438 Q5VSD8 79 aa2.97□□□□□ -1.93
CSDE1-202ENST00000339438 KRTAP13-2Q52LG2 175 aa2.96□□□□□ -1.93
CSDE1-202ENST00000339438 COX6B2Q6YFQ2 88 aa2.96□□□□□ -1.93
CSDE1-202ENST00000339438 SSBP3-AS1Q7Z2R9 100 aa2.96□□□□□ -1.94
CSDE1-202ENST00000339438 LCE2CQ5TA81 110 aa2.96□□□□□ -1.94
CSDE1-202ENST00000339438 KRTAP13-4Q3LI77 160 aa2.95□□□□□ -1.94
CSDE1-202ENST00000339438 C10orf95Q9H7T3 257 aa2.94□□□□□ -1.94
CSDE1-202ENST00000339438 KRTAP10-6P60371 365 aaPredicted RBP2.93□□□□□ -1.94
CSDE1-202ENST00000339438 SPINT4Q6UDR6 99 aa2.92□□□□□ -1.94
CSDE1-202ENST00000339438 SEC61BP60468 96 aaKnown RBP2.92□□□□□ -1.94
CSDE1-202ENST00000339438 C9orf92A6NGG3 77 aa2.91□□□□□ -1.94
CSDE1-202ENST00000339438 KRTAP3-2Q9BYR7 98 aa2.9□□□□□ -1.94
CSDE1-202ENST00000339438 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
CSDE1-202ENST00000339438 KRTAP3-3Q9BYR6 98 aa2.89□□□□□ -1.95
CSDE1-202ENST00000339438 RPL37P61927 97 aaKnown RBP2.88□□□□□ -1.95
CSDE1-202ENST00000339438 KRTAP4-1Q9BYQ7 146 aa2.88□□□□□ -1.95
CSDE1-202ENST00000339438 K7ERS5 55 aa2.85□□□□□ -1.95
CSDE1-202ENST00000339438 XP32Q5T750 250 aa2.85□□□□□ -1.95
CSDE1-202ENST00000339438 KRTAP12-2P59991 146 aa2.84□□□□□ -1.95
CSDE1-202ENST00000339438 S4R3F8 94 aa2.82□□□□□ -1.96
CSDE1-202ENST00000339438 SSPOA2VEC9 5147 aa2.81□□□□□ -1.96
CSDE1-202ENST00000339438 KRTAP12-1P59990 96 aa2.8□□□□□ -1.96
CSDE1-202ENST00000339438 A0A0D9SG42 100 aa2.79□□□□□ -1.96
CSDE1-202ENST00000339438 LCE2DQ5TA82 110 aaPredicted RBP2.79□□□□□ -1.96
CSDE1-202ENST00000339438 RPS29P62273 56 aaKnown RBP2.77□□□□□ -1.97
CSDE1-202ENST00000339438 USH2AO75445 5202 aa2.76□□□□□ -1.97
CSDE1-202ENST00000339438 KRTAP9-2Q9BYQ4 174 aa2.73□□□□□ -1.97
CSDE1-202ENST00000339438 LORP23490 312 aaPredicted RBP2.71□□□□□ -1.98
CSDE1-202ENST00000339438 PLAC4Q8WY50 150 aa2.7□□□□□ -1.98
CSDE1-202ENST00000339438 KRTAP9-8Q9BYQ0 159 aa2.67□□□□□ -1.98
CSDE1-202ENST00000339438 MT1HP80294 61 aa2.66□□□□□ -1.98
CSDE1-202ENST00000339438 KRTAP9-6A0A140TA67 174 aa2.65□□□□□ -1.98
CSDE1-202ENST00000339438 SPRR5A0A1B0GTR4 108 aa2.61□□□□□ -1.99
CSDE1-202ENST00000339438 M0QZ58 72 aa2.61□□□□□ -1.99
CSDE1-202ENST00000339438 KRTAP23-1A1A580 65 aa2.6□□□□□ -1.99
CSDE1-202ENST00000339438 KRTAP9-3Q9BYQ3 159 aa2.57□□□□□ -2
CSDE1-202ENST00000339438 CAMK2N1Q7Z7J9 78 aa2.55□□□□□ -2
CSDE1-202ENST00000339438 FCGBPQ9Y6R7 5405 aaPredicted RBP2.53□□□□□ -2
CSDE1-202ENST00000339438 LCE2BO14633 110 aa2.52□□□□□ -2.01
CSDE1-202ENST00000339438 M0R2T5 61 aa2.51□□□□□ -2.01
CSDE1-202ENST00000339438 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
CSDE1-202ENST00000339438 PRO2289Q9P1D8 64 aa2.5□□□□□ -2.01
CSDE1-202ENST00000339438 CRCT1Q9UGL9 99 aa2.47□□□□□ -2.01
CSDE1-202ENST00000339438 MT1FP04733 61 aa2.46□□□□□ -2.02
CSDE1-202ENST00000339438 MT2AP02795 61 aa2.45□□□□□ -2.02
CSDE1-202ENST00000339438 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.44□□□□□ -2.02
CSDE1-202ENST00000339438 R4GN34 69 aa2.44□□□□□ -2.02
CSDE1-202ENST00000339438 KRTAP19-6Q3LI70 58 aa2.43□□□□□ -2.02
CSDE1-202ENST00000339438 KRTAP19-1Q8IUB9 90 aa2.41□□□□□ -2.02
CSDE1-202ENST00000339438 INE1O15225 51 aa2.39□□□□□ -2.03
CSDE1-202ENST00000339438 KRTAP19-8Q3LI54 63 aa2.37□□□□□ -2.03
CSDE1-202ENST00000339438 MACF1Q9UPN3 7388 aaKnown RBP2.36□□□□□ -2.03
CSDE1-202ENST00000339438 MT1BP07438 61 aa2.36□□□□□ -2.03
CSDE1-202ENST00000339438 FSIP2Q5CZC0 6907 aa2.35□□□□□ -2.03
CSDE1-202ENST00000339438 KRTAP10-10P60014 251 aa2.34□□□□□ -2.03
CSDE1-202ENST00000339438 KRTAP5-9P26371 169 aa2.34□□□□□ -2.04
CSDE1-202ENST00000339438 SPRR2GQ9BYE4 73 aa2.33□□□□□ -2.04
CSDE1-202ENST00000339438 MUC12Q9UKN1 5478 aa2.32□□□□□ -2.04
CSDE1-202ENST00000339438 KRTAP9-7A8MTY7 169 aa2.32□□□□□ -2.04
CSDE1-202ENST00000339438 NEBP20929 6669 aa2.31□□□□□ -2.04
CSDE1-202ENST00000339438 TNP1P09430 55 aa2.3□□□□□ -2.04
CSDE1-202ENST00000339438 KMT2DO14686 5537 aa2.3□□□□□ -2.04
CSDE1-202ENST00000339438 KRTAP6-3Q3LI67 103 aa2.26□□□□□ -2.05
CSDE1-202ENST00000339438 LCE3AQ5TA76 89 aa2.24□□□□□ -2.05
CSDE1-202ENST00000339438 SYNE2Q8WXH0 6885 aaKnown RBP2.24□□□□□ -2.05
CSDE1-202ENST00000339438 KRTAP10-12P60413 245 aa2.24□□□□□ -2.05
CSDE1-202ENST00000339438 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
CSDE1-202ENST00000339438 KRTAP10-5P60370 271 aa2.21□□□□□ -2.06
CSDE1-202ENST00000339438 KRTAP8-1Q8IUC2 63 aa2.2□□□□□ -2.06
CSDE1-202ENST00000339438 MT1XP80297 61 aa2.2□□□□□ -2.06
CSDE1-202ENST00000339438 KRTAP12-3P60328 96 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms