RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 LRP1Q07954 4544 aaKnown RBP7.31□□□□□ -1.24
CPNE1-201ENST00000317677 HERC1Q15751 4861 aa7.3□□□□□ -1.24
CPNE1-201ENST00000317677 RPS29P62273 56 aaKnown RBP7.27□□□□□ -1.25
CPNE1-201ENST00000317677 TNXBP22105 4242 aa7.26□□□□□ -1.25
CPNE1-201ENST00000317677 IGKV2-30P06310 120 aa7.26□□□□□ -1.25
CPNE1-201ENST00000317677 FAT3Q8TDW7 4589 aa7.25□□□□□ -1.25
CPNE1-201ENST00000317677 A8MUU9 505 aa7.24□□□□□ -1.25
CPNE1-201ENST00000317677 KRTAP16-1A8MUX0 517 aa7.24□□□□□ -1.25
CPNE1-201ENST00000317677 KRTAP10-8P60410 259 aa7.2□□□□□ -1.26
CPNE1-201ENST00000317677 IGKV2D-30A0A075B6S6 120 aa7.13□□□□□ -1.27
CPNE1-201ENST00000317677 P0C880 135 aa7.12□□□□□ -1.27
CPNE1-201ENST00000317677 MT1HL1P0DM35 61 aa7.11□□□□□ -1.27
CPNE1-201ENST00000317677 H0YAA0 97 aa7.09□□□□□ -1.27
CPNE1-201ENST00000317677 C9orf92A6NGG3 77 aa7.08□□□□□ -1.28
CPNE1-201ENST00000317677 HMCN2Q8NDA2 5059 aa7.05□□□□□ -1.28
CPNE1-201ENST00000317677 C20orf166-AS1Q96NR2 134 aa7.01□□□□□ -1.29
CPNE1-201ENST00000317677 A0A1B0GU33 70 aa6.99□□□□□ -1.29
CPNE1-201ENST00000317677 K7ERS5 55 aa6.95□□□□□ -1.3
CPNE1-201ENST00000317677 H1FX-AS1Q4G0G2 97 aa6.95□□□□□ -1.3
CPNE1-201ENST00000317677 UBR4Q5T4S7 5183 aa6.91□□□□□ -1.3
CPNE1-201ENST00000317677 XP32Q5T750 250 aa6.86□□□□□ -1.31
CPNE1-201ENST00000317677 KRTAP15-1Q3LI76 137 aa6.84□□□□□ -1.31
CPNE1-201ENST00000317677 CRIPTQ9P021 101 aa6.84□□□□□ -1.31
CPNE1-201ENST00000317677 SPINT4Q6UDR6 99 aa6.83□□□□□ -1.32
CPNE1-201ENST00000317677 RPL37P61927 97 aaKnown RBP6.82□□□□□ -1.32
CPNE1-201ENST00000317677 LRP2P98164 4655 aa6.82□□□□□ -1.32
CPNE1-201ENST00000317677 LPAP08519 4548 aa6.8□□□□□ -1.32
CPNE1-201ENST00000317677 NDUFAF8A1L188 74 aa6.8□□□□□ -1.32
CPNE1-201ENST00000317677 A0A0A0MQY5 61 aa6.77□□□□□ -1.33
CPNE1-201ENST00000317677 TPRXLQ17RH7 258 aa6.77□□□□□ -1.33
CPNE1-201ENST00000317677 COX6B2Q6YFQ2 88 aa6.75□□□□□ -1.33
CPNE1-201ENST00000317677 KRTAP3-1Q9BYR8 98 aa6.75□□□□□ -1.33
CPNE1-201ENST00000317677 RNF213Q63HN8 5207 aa6.74□□□□□ -1.33
CPNE1-201ENST00000317677 C10orf95Q9H7T3 257 aa6.55□□□□□ -1.36
CPNE1-201ENST00000317677 MUC17Q685J3 4493 aa6.55□□□□□ -1.36
CPNE1-201ENST00000317677 KRTAP10-6P60371 365 aaPredicted RBP6.55□□□□□ -1.36
CPNE1-201ENST00000317677 KRTAP4-1Q9BYQ7 146 aa6.51□□□□□ -1.37
CPNE1-201ENST00000317677 KRTAP13-4Q3LI77 160 aa6.5□□□□□ -1.37
CPNE1-201ENST00000317677 KRTAP3-3Q9BYR6 98 aa6.49□□□□□ -1.37
CPNE1-201ENST00000317677 MUC2Q02817 5179 aa6.48□□□□□ -1.37
CPNE1-201ENST00000317677 SEC61BP60468 96 aaKnown RBP6.47□□□□□ -1.37
CPNE1-201ENST00000317677 KRTAP3-2Q9BYR7 98 aa6.46□□□□□ -1.38
CPNE1-201ENST00000317677 LUZP6Q538Z0 58 aa6.45□□□□□ -1.38
CPNE1-201ENST00000317677 S4R3F8 94 aa6.44□□□□□ -1.38
CPNE1-201ENST00000317677 A0A0D9SG42 100 aa6.44□□□□□ -1.38
CPNE1-201ENST00000317677 KRTAP19-2Q3LHN2 52 aa6.37□□□□□ -1.39
CPNE1-201ENST00000317677 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
CPNE1-201ENST00000317677 FAT4Q6V0I7 4981 aa6.34□□□□□ -1.39
CPNE1-201ENST00000317677 KRTAP12-1P59990 96 aa6.31□□□□□ -1.4
CPNE1-201ENST00000317677 LCE2AQ5TA79 106 aaPredicted RBP6.27□□□□□ -1.4
CPNE1-201ENST00000317677 PLAC4Q8WY50 150 aa6.22□□□□□ -1.41
CPNE1-201ENST00000317677 M0QZ58 72 aa6.18□□□□□ -1.42
CPNE1-201ENST00000317677 FLGP20930 4061 aaPredicted RBP6.15□□□□□ -1.42
CPNE1-201ENST00000317677 LCE2CQ5TA81 110 aa6.14□□□□□ -1.43
CPNE1-201ENST00000317677 KRTAP9-2Q9BYQ4 174 aa6.14□□□□□ -1.43
CPNE1-201ENST00000317677 MT1HP80294 61 aa6.04□□□□□ -1.44
CPNE1-201ENST00000317677 LORP23490 312 aaPredicted RBP6.03□□□□□ -1.44
CPNE1-201ENST00000317677 M0R2T5 61 aa6□□□□□ -1.45
CPNE1-201ENST00000317677 LCE2DQ5TA82 110 aaPredicted RBP5.98□□□□□ -1.45
CPNE1-201ENST00000317677 PP632Q6XCG6 107 aa5.98□□□□□ -1.45
CPNE1-201ENST00000317677 KRTAP9-6A0A140TA67 174 aa5.95□□□□□ -1.46
CPNE1-201ENST00000317677 R4GN34 69 aa5.89□□□□□ -1.47
CPNE1-201ENST00000317677 CAMK2N1Q7Z7J9 78 aa5.88□□□□□ -1.47
CPNE1-201ENST00000317677 FSIP2Q5CZC0 6907 aa5.84□□□□□ -1.47
CPNE1-201ENST00000317677 CRCT1Q9UGL9 99 aa5.82□□□□□ -1.48
CPNE1-201ENST00000317677 SPRR5A0A1B0GTR4 108 aa5.8□□□□□ -1.48
CPNE1-201ENST00000317677 KRTAP9-8Q9BYQ0 159 aa5.78□□□□□ -1.48
CPNE1-201ENST00000317677 MT2AP02795 61 aa5.77□□□□□ -1.49
CPNE1-201ENST00000317677 PRO2289Q9P1D8 64 aa5.76□□□□□ -1.49
CPNE1-201ENST00000317677 MT1FP04733 61 aa5.76□□□□□ -1.49
CPNE1-201ENST00000317677 KRTAP23-1A1A580 65 aa5.71□□□□□ -1.49
CPNE1-201ENST00000317677 KRTAP19-1Q8IUB9 90 aa5.71□□□□□ -1.49
CPNE1-201ENST00000317677 SPRR2GQ9BYE4 73 aa5.69□□□□□ -1.5
CPNE1-201ENST00000317677 KRTAP10-10P60014 251 aa5.67□□□□□ -1.5
CPNE1-201ENST00000317677 INE1O15225 51 aa5.6□□□□□ -1.51
CPNE1-201ENST00000317677 USH2AO75445 5202 aa5.6□□□□□ -1.51
CPNE1-201ENST00000317677 KRTAP9-3Q9BYQ3 159 aa5.56□□□□□ -1.52
CPNE1-201ENST00000317677 KRTAP19-8Q3LI54 63 aa5.53□□□□□ -1.52
CPNE1-201ENST00000317677 SSPOA2VEC9 5147 aa5.52□□□□□ -1.53
CPNE1-201ENST00000317677 MT1BP07438 61 aa5.49□□□□□ -1.53
CPNE1-201ENST00000317677 LCE2BO14633 110 aa5.48□□□□□ -1.53
CPNE1-201ENST00000317677 TNP1P09430 55 aa5.48□□□□□ -1.53
CPNE1-201ENST00000317677 FCGBPQ9Y6R7 5405 aaPredicted RBP5.41□□□□□ -1.54
CPNE1-201ENST00000317677 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.4□□□□□ -1.54
CPNE1-201ENST00000317677 KRTAP9-7A8MTY7 169 aa5.34□□□□□ -1.55
CPNE1-201ENST00000317677 KRTAP10-5P60370 271 aa5.33□□□□□ -1.56
CPNE1-201ENST00000317677 MT1XP80297 61 aa5.33□□□□□ -1.56
CPNE1-201ENST00000317677 KRTAP19-6Q3LI70 58 aa5.33□□□□□ -1.56
CPNE1-201ENST00000317677 MACF1Q9UPN3 7388 aaKnown RBP5.27□□□□□ -1.57
CPNE1-201ENST00000317677 SYNE2Q8WXH0 6885 aaKnown RBP5.26□□□□□ -1.57
CPNE1-201ENST00000317677 KRTAP10-7P60409 375 aaPredicted RBP5.15□□□□□ -1.59
CPNE1-201ENST00000317677 LCE3AQ5TA76 89 aa5.13□□□□□ -1.59
CPNE1-201ENST00000317677 KRTAP6-3Q3LI67 103 aa5.07□□□□□ -1.6
CPNE1-201ENST00000317677 KRTAP10-12P60413 245 aa5.05□□□□□ -1.6
CPNE1-201ENST00000317677 KRTAP8-1Q8IUC2 63 aa5.05□□□□□ -1.6
CPNE1-201ENST00000317677 NEBP20929 6669 aa4.97□□□□□ -1.61
CPNE1-201ENST00000317677 KRTAP4-8A0A0G2JLE6 195 aa4.93□□□□□ -1.62
CPNE1-201ENST00000317677 KRTAP4-8Q9BYQ9 185 aa4.93□□□□□ -1.62
CPNE1-201ENST00000317677 KMT2DO14686 5537 aa4.91□□□□□ -1.62
CPNE1-201ENST00000317677 KRTAP12-3P60328 96 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms