RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 H1FX-AS1Q4G0G2 97 aa4.38□□□□□ -1.71
HMGN1-201ENST00000288344 C7orf65Q6ZTY9 151 aa4.38□□□□□ -1.71
HMGN1-201ENST00000288344 TP53AIP1Q9HCN2 124 aa4.36□□□□□ -1.71
HMGN1-201ENST00000288344 C4orf26Q17RF5 130 aa4.34□□□□□ -1.71
HMGN1-201ENST00000288344 KRTAP10-10P60014 251 aa4.32□□□□□ -1.72
HMGN1-201ENST00000288344 ATP5EP2Q5VTU8 51 aa4.32□□□□□ -1.72
HMGN1-201ENST00000288344 LINC00643Q86TS7 51 aa4.31□□□□□ -1.72
HMGN1-201ENST00000288344 CYP4F30PQ9H0H9 118 aa4.31□□□□□ -1.72
HMGN1-201ENST00000288344 FCGBPQ9Y6R7 5405 aaPredicted RBP4.31□□□□□ -1.72
HMGN1-201ENST00000288344 A0A087WVE0 104 aa4.27□□□□□ -1.73
HMGN1-201ENST00000288344 C1orf64Q8NEQ6 169 aa4.26□□□□□ -1.73
HMGN1-201ENST00000288344 TRAV22A0A0B4J277 110 aa4.25□□□□□ -1.73
HMGN1-201ENST00000288344 OCR1Q9BZK8 76 aa4.25□□□□□ -1.73
HMGN1-201ENST00000288344 UQCRQO14949 82 aa4.24□□□□□ -1.73
HMGN1-201ENST00000288344 HIST1H4AP62805 103 aaKnown RBP4.24□□□□□ -1.73
HMGN1-201ENST00000288344 LOC101927531A0A1B0GV80 90 aa4.22□□□□□ -1.73
HMGN1-201ENST00000288344 LCA10Q71F78 164 aa4.22□□□□□ -1.73
HMGN1-201ENST00000288344 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
HMGN1-201ENST00000288344 H0Y9P7 68 aa4.2□□□□□ -1.74
HMGN1-201ENST00000288344 C5orf47Q569G3 176 aa4.2□□□□□ -1.74
HMGN1-201ENST00000288344 S4R3F8 94 aa4.19□□□□□ -1.74
HMGN1-201ENST00000288344 ATOX1O00244 68 aa4.18□□□□□ -1.74
HMGN1-201ENST00000288344 KLKP1Q107X0 134 aa4.18□□□□□ -1.74
HMGN1-201ENST00000288344 CSAG1Q6PB30 78 aa4.18□□□□□ -1.74
HMGN1-201ENST00000288344 J3QR89 54 aa4.17□□□□□ -1.74
HMGN1-201ENST00000288344 SPRR2GQ9BYE4 73 aa4.16□□□□□ -1.74
HMGN1-201ENST00000288344 KRTAP2-2Q9BYT5 123 aa4.16□□□□□ -1.74
HMGN1-201ENST00000288344 LINC00208Q96KT6 92 aa4.15□□□□□ -1.75
HMGN1-201ENST00000288344 KRTAP19-8Q3LI54 63 aa4.14□□□□□ -1.75
HMGN1-201ENST00000288344 IMUPQ9GZP8 106 aa4.14□□□□□ -1.75
HMGN1-201ENST00000288344 MACF1Q9UPN3 7388 aaKnown RBP4.14□□□□□ -1.75
HMGN1-201ENST00000288344 MT1BP07438 61 aa4.13□□□□□ -1.75
HMGN1-201ENST00000288344 MT-ATP8P03928 68 aa4.12□□□□□ -1.75
HMGN1-201ENST00000288344 NDUFAF8A1L188 74 aa4.1□□□□□ -1.75
HMGN1-201ENST00000288344 A8MUN3 132 aa4.1□□□□□ -1.75
HMGN1-201ENST00000288344 H3BPC8 53 aa4.1□□□□□ -1.75
HMGN1-201ENST00000288344 H0YAA0 97 aa4.09□□□□□ -1.75
HMGN1-201ENST00000288344 MT3P25713 68 aa4.09□□□□□ -1.75
HMGN1-201ENST00000288344 K7ERU9 68 aa4.08□□□□□ -1.76
HMGN1-201ENST00000288344 MP68P56378 58 aa4.08□□□□□ -1.76
HMGN1-201ENST00000288344 DMAC1Q96GE9 116 aa4.05□□□□□ -1.76
HMGN1-201ENST00000288344 SYNE2Q8WXH0 6885 aaKnown RBP4.04□□□□□ -1.76
HMGN1-201ENST00000288344 NDUFC1O43677 76 aa4.04□□□□□ -1.76
HMGN1-201ENST00000288344 CRIPTQ9P021 101 aa4.03□□□□□ -1.76
HMGN1-201ENST00000288344 TRAV7A0A075B6U4 112 aa4.02□□□□□ -1.77
HMGN1-201ENST00000288344 FAM236AA0A1B0GUQ0 79 aa4.02□□□□□ -1.77
HMGN1-201ENST00000288344 FAM236BA0A1B0GV22 79 aa4.02□□□□□ -1.77
HMGN1-201ENST00000288344 SCGB1A1P11684 91 aa4.02□□□□□ -1.77
HMGN1-201ENST00000288344 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.01□□□□□ -1.77
HMGN1-201ENST00000288344 KRTAP10-7P60409 375 aaPredicted RBP4□□□□□ -1.77
HMGN1-201ENST00000288344 Q5VV11 94 aa3.99□□□□□ -1.77
HMGN1-201ENST00000288344 SMIM20Q8N5G0 67 aa3.99□□□□□ -1.77
HMGN1-201ENST00000288344 KRTAP10-5P60370 271 aa3.98□□□□□ -1.77
HMGN1-201ENST00000288344 ADM2Q7Z4H4 148 aa3.97□□□□□ -1.77
HMGN1-201ENST00000288344 P0C880 135 aa3.95□□□□□ -1.78
HMGN1-201ENST00000288344 LCE1FQ5T754 118 aa3.94□□□□□ -1.78
HMGN1-201ENST00000288344 A6NN06 94 aa3.92□□□□□ -1.78
HMGN1-201ENST00000288344 KRTAP6-3Q3LI67 103 aa3.92□□□□□ -1.78
HMGN1-201ENST00000288344 ACYP2P14621 99 aa3.91□□□□□ -1.78
HMGN1-201ENST00000288344 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
HMGN1-201ENST00000288344 SERP2Q8N6R1 65 aa3.91□□□□□ -1.78
HMGN1-201ENST00000288344 SNURFQ9Y675 71 aa3.91□□□□□ -1.78
HMGN1-201ENST00000288344 SPANXA2-OT1Q8N9U9 137 aa3.9□□□□□ -1.79
HMGN1-201ENST00000288344 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
HMGN1-201ENST00000288344 MT1XP80297 61 aa3.88□□□□□ -1.79
HMGN1-201ENST00000288344 KMT2DO14686 5537 aa3.87□□□□□ -1.79
HMGN1-201ENST00000288344 C20orf197Q8N268 126 aa3.87□□□□□ -1.79
HMGN1-201ENST00000288344 LCE1EQ5T753 118 aa3.84□□□□□ -1.79
HMGN1-201ENST00000288344 KRTAP5-9P26371 169 aa3.82□□□□□ -1.8
HMGN1-201ENST00000288344 CYSTM1Q9H1C7 97 aa3.82□□□□□ -1.8
HMGN1-201ENST00000288344 R4GN34 69 aa3.82□□□□□ -1.8
HMGN1-201ENST00000288344 COX7CP15954 63 aa3.81□□□□□ -1.8
HMGN1-201ENST00000288344 NEBP20929 6669 aa3.8□□□□□ -1.8
HMGN1-201ENST00000288344 M0QZ58 72 aa3.8□□□□□ -1.8
HMGN1-201ENST00000288344 MDN1Q9NU22 5596 aa3.78□□□□□ -1.8
HMGN1-201ENST00000288344 H7BZZ5 65 aa3.78□□□□□ -1.8
HMGN1-201ENST00000288344 SPTSSBQ8NFR3 76 aa3.77□□□□□ -1.81
HMGN1-201ENST00000288344 KRTAP12-2P59991 146 aa3.76□□□□□ -1.81
HMGN1-201ENST00000288344 KRTAP13-4Q3LI77 160 aa3.76□□□□□ -1.81
HMGN1-201ENST00000288344 PLAC4Q8WY50 150 aa3.76□□□□□ -1.81
HMGN1-201ENST00000288344 CHKB-CPT1BH3BT56 60 aa3.73□□□□□ -1.81
HMGN1-201ENST00000288344 COA5Q86WW8 74 aa3.73□□□□□ -1.81
HMGN1-201ENST00000288344 PRO2289Q9P1D8 64 aa3.73□□□□□ -1.81
HMGN1-201ENST00000288344 SEC61GP60059 68 aa3.72□□□□□ -1.81
HMGN1-201ENST00000288344 KRTAP10-12P60413 245 aa3.72□□□□□ -1.81
HMGN1-201ENST00000288344 LINC01554Q52M75 96 aa3.7□□□□□ -1.82
HMGN1-201ENST00000288344 CCDC179H3BU77 68 aa3.65□□□□□ -1.83
HMGN1-201ENST00000288344 ANAPC13Q9BS18 74 aa3.65□□□□□ -1.83
HMGN1-201ENST00000288344 LCE3CQ5T5A8 94 aa3.63□□□□□ -1.83
HMGN1-201ENST00000288344 KRTAP8-1Q8IUC2 63 aa3.6□□□□□ -1.83
HMGN1-201ENST00000288344 SPRR2FQ96RM1 72 aa3.6□□□□□ -1.83
HMGN1-201ENST00000288344 SPATA8Q6RVD6 105 aa3.58□□□□□ -1.84
HMGN1-201ENST00000288344 A0A1B0GU33 70 aa3.57□□□□□ -1.84
HMGN1-201ENST00000288344 KRTAP12-1P59990 96 aa3.56□□□□□ -1.84
HMGN1-201ENST00000288344 SERP1Q9Y6X1 66 aa3.56□□□□□ -1.84
HMGN1-201ENST00000288344 SPRR2EP22531 72 aa3.51□□□□□ -1.85
HMGN1-201ENST00000288344 SPRR2BP35325 72 aa3.51□□□□□ -1.85
HMGN1-201ENST00000288344 SPRR2AP35326 72 aa3.51□□□□□ -1.85
HMGN1-201ENST00000288344 ATP5EP56381 51 aaPredicted RBP3.51□□□□□ -1.85
HMGN1-201ENST00000288344 KRTAP20-1Q3LI63 56 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms