RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.73□□□□□ -2.53
VPS35-212ENST00000640313 PKD1L3Q7Z443 1732 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 PLIN4Q96Q06 1357 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 ABCC10Q5T3U5 1492 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 FYCO1Q9BQS8 1478 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 EIF4G3O43432 1585 aaKnown RBP-0.74□□□□□ -2.53
VPS35-212ENST00000640313 POLR1AO95602 1720 aaPredicted RBP-0.74□□□□□ -2.53
VPS35-212ENST00000640313 UNC13AQ9UPW8 1703 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 CEBPZOSA8MTT3 80 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 ATP6V1G2-DDX39BF2Z307 99 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 NDUFB1O75438 58 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 GYPAP02724 150 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 HMGA1P17096 107 aaKnown RBP-0.74□□□□□ -2.53
VPS35-212ENST00000640313 S100PP25815 95 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 IFI27P40305 119 aaPredicted RBP-0.74□□□□□ -2.53
VPS35-212ENST00000640313 SARNPP82979 210 aaKnown RBP-0.74□□□□□ -2.53
VPS35-212ENST00000640313 ACBD7Q8N6N7 88 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 CDC42BPGQ6DT37 1551 aa-0.74□□□□□ -2.53
VPS35-212ENST00000640313 WDFY3Q8IZQ1 3526 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 MYO15AQ9UKN7 3530 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 LINC00643Q86TS7 51 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 SNHG12Q9BXW3 62 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 FRYLO94915 3013 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 CEP162Q5TB80 1403 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 CNTLNQ9NXG0 1405 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 MAST1Q9Y2H9 1570 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 SUPT6HQ7KZ85 1726 aaKnown RBP-0.75□□□□□ -2.53
VPS35-212ENST00000640313 TOGARAM1Q9Y4F4 1720 aa-0.75□□□□□ -2.53
VPS35-212ENST00000640313 M0R143 59 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 SNRPFP62306 86 aaKnown RBP-0.76□□□□□ -2.53
VPS35-212ENST00000640313 NREPQ16612 68 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 KRTAP20-1Q3LI63 56 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 PYY3Q5JQD4 70 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 NCBP2-AS2Q69YL0 99 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 KCNQ1DNQ9H478 68 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 CCNB3Q8WWL7 1395 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 CCDC88BA6NC98 1476 aa-0.76□□□□□ -2.53
VPS35-212ENST00000640313 URB2Q14146 1524 aaKnown RBP-0.76□□□□□ -2.53
VPS35-212ENST00000640313 CLTCQ00610 1675 aaKnown RBP-0.76□□□□□ -2.53
VPS35-212ENST00000640313 LTN1O94822 1766 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 UBR1Q8IWV7 1749 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 ITSN2Q9NZM3 1697 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 TMEM131LA2VDJ0 1609 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.77□□□□□ -2.53
VPS35-212ENST00000640313 TDRG1Q3Y452 100 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 DEFB121Q5J5C9 76 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 BVES-AS1Q5T3Y7 98 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 TCEAL7Q9BRU2 100 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 NOP10Q9NPE3 64 aaKnown RBP-0.77□□□□□ -2.53
VPS35-212ENST00000640313 DMDP11532 3685 aa-0.77□□□□□ -2.53
VPS35-212ENST00000640313 ARHGAP35Q9NRY4 1499 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 H3BUA1 57 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 M0QZ58 72 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 DEFB4AO15263 64 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 MINOS1Q5TGZ0 78 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 S100A16Q96FQ6 103 aaKnown RBP-0.78□□□□□ -2.53
VPS35-212ENST00000640313 ANKRD36CQ5JPF3 1778 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 ARFGEF2Q9Y6D5 1785 aa-0.78□□□□□ -2.53
VPS35-212ENST00000640313 PARP4Q9UKK3 1724 aaKnown RBP-0.78□□□□□ -2.53
VPS35-212ENST00000640313 ZC3H13Q5T200 1668 aaKnown RBP-0.78□□□□□ -2.53
VPS35-212ENST00000640313 MYO3AQ8NEV4 1616 aa-0.78□□□□□ -2.54
VPS35-212ENST00000640313 KIAA0586Q9BVV6 1533 aa-0.79□□□□□ -2.54
VPS35-212ENST00000640313 MRPL33O75394 65 aaKnown RBP-0.79□□□□□ -2.54
VPS35-212ENST00000640313 SFTA3P0C7M3 94 aa-0.79□□□□□ -2.54
VPS35-212ENST00000640313 KIF1AQ12756 1690 aa-0.79□□□□□ -2.54
VPS35-212ENST00000640313 ASXL1Q8IXJ9 1541 aa-0.79□□□□□ -2.54
VPS35-212ENST00000640313 LY75O60449 1722 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 ETDCA0A1B0GVM5 59 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 LINC01546A6NGU7 62 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 SMIM13P0DJ93 91 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 PKIAP61925 76 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 ATP5EP2Q5VTU8 51 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 UBL5Q9BZL1 73 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 C6orf48Q9UBA6 75 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 RNF17Q9BXT8 1623 aaKnown RBP-0.8□□□□□ -2.54
VPS35-212ENST00000640313 SMARCA2P51531 1590 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 MED14O60244 1454 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 CD163L1Q9NR16 1453 aa-0.8□□□□□ -2.54
VPS35-212ENST00000640313 PCNTO95613 3336 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 VPS8Q8N3P4 1428 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 TJP1Q07157 1748 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 ITSN1Q15811 1721 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 DDX60LQ5H9U9 1706 aaKnown RBP-0.81□□□□□ -2.54
VPS35-212ENST00000640313 PLCH1Q4KWH8 1693 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 PIK3C2BO00750 1634 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 THOC2Q8NI27 1593 aaKnown RBP-0.81□□□□□ -2.54
VPS35-212ENST00000640313 M0QY20 66 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 FCER1GP30273 86 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 SZT2Q5T011 3432 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 NRAPQ86VF7 1730 aa-0.81□□□□□ -2.54
VPS35-212ENST00000640313 SPEGQ15772 3267 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 INO80Q9ULG1 1556 aaPredicted RBP-0.82□□□□□ -2.54
VPS35-212ENST00000640313 A0A087WXM4 84 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 PVALEFA0A1B0GWK0 134 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 A8MTW9 85 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 SPART-AS1P0CW21 52 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 ENHOQ6UWT2 76 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 RICTORQ6R327 1708 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 RALGAPBQ86X10 1494 aa-0.82□□□□□ -2.54
VPS35-212ENST00000640313 ANKRD26Q9UPS8 1709 aa-0.83□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms