RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MOBPQ13875 183 aa12.75□□□□□ -0.37
LIME1-210ENST00000621325 LINC00472Q9H8W2 130 aa12.75□□□□□ -0.37
LIME1-210ENST00000621325 LCA10Q71F78 164 aa12.74□□□□□ -0.37
LIME1-210ENST00000621325 LRP1BQ9NZR2 4599 aa12.73□□□□□ -0.37
LIME1-210ENST00000621325 A6NN06 94 aa12.73□□□□□ -0.37
LIME1-210ENST00000621325 Q6ZSA8 131 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 SACSQ9NZJ4 4579 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 NDUFS5O43920 106 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 ATP11AUNQ6ZP68 121 aa12.69□□□□□ -0.38
LIME1-210ENST00000621325 PRR15LQ9BU68 103 aa12.69□□□□□ -0.38
LIME1-210ENST00000621325 C8orf87E5RJ46 101 aa12.68□□□□□ -0.38
LIME1-210ENST00000621325 WFDC13Q8IUB5 93 aa12.68□□□□□ -0.38
LIME1-210ENST00000621325 Q8N9P0 234 aaPredicted RBP12.67□□□□□ -0.38
LIME1-210ENST00000621325 A8MWP4 228 aa12.64□□□□□ -0.39
LIME1-210ENST00000621325 Q96NJ1 140 aa12.64□□□□□ -0.39
LIME1-210ENST00000621325 H3BS24 57 aa12.62□□□□□ -0.39
LIME1-210ENST00000621325 A6NED7 52 aa12.6□□□□□ -0.39
LIME1-210ENST00000621325 C7orf65Q6ZTY9 151 aa12.6□□□□□ -0.39
LIME1-210ENST00000621325 LIMD2Q9BT23 127 aa12.59□□□□□ -0.39
LIME1-210ENST00000621325 PKHD1P08F94 4074 aa12.59□□□□□ -0.39
LIME1-210ENST00000621325 KRTAP29-1A8MX34 341 aaPredicted RBP12.59□□□□□ -0.39
LIME1-210ENST00000621325 CASC2Q6XLA1 102 aa12.55□□□□□ -0.4
LIME1-210ENST00000621325 VPS13BQ7Z7G8 4022 aa12.54□□□□□ -0.4
LIME1-210ENST00000621325 Q75L30 129 aa12.53□□□□□ -0.4
LIME1-210ENST00000621325 LINC00208Q96KT6 92 aa12.52□□□□□ -0.41
LIME1-210ENST00000621325 A0A087X002 238 aa12.51□□□□□ -0.41
LIME1-210ENST00000621325 MMP24-AS1A0A0U1RRL7 71 aa12.5□□□□□ -0.41
LIME1-210ENST00000621325 NDUFB1O75438 58 aa12.5□□□□□ -0.41
LIME1-210ENST00000621325 CDC42SE1Q9NRR8 79 aa12.48□□□□□ -0.41
LIME1-210ENST00000621325 KRTAP13-2Q52LG2 175 aa12.47□□□□□ -0.41
LIME1-210ENST00000621325 SSBP3-AS1Q7Z2R9 100 aa12.45□□□□□ -0.42
LIME1-210ENST00000621325 DYNC1H1Q14204 4646 aaKnown RBP12.43□□□□□ -0.42
LIME1-210ENST00000621325 IGHV6-1A0A0B4J1U7 121 aa12.43□□□□□ -0.42
LIME1-210ENST00000621325 LOC101927531A0A1B0GV80 90 aa12.43□□□□□ -0.42
LIME1-210ENST00000621325 KRTAP1-4P0C5Y4 121 aa12.42□□□□□ -0.42
LIME1-210ENST00000621325 SPINK6Q6UWN8 80 aa12.42□□□□□ -0.42
LIME1-210ENST00000621325 A0A1B0GVX0 72 aa12.41□□□□□ -0.42
LIME1-210ENST00000621325 C8orf17Q9NRJ1 99 aa12.4□□□□□ -0.42
LIME1-210ENST00000621325 NOTCH2NLQ7Z3S9 236 aa12.39□□□□□ -0.43
LIME1-210ENST00000621325 RYR2Q92736 4967 aa12.39□□□□□ -0.43
LIME1-210ENST00000621325 CDK2AP2O75956 126 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 MP68P56378 58 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 PRAC1Q96KF2 57 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 ASB16-AS1Q495Z4 193 aa12.37□□□□□ -0.43
LIME1-210ENST00000621325 A0A1B0GVY2 172 aa12.36□□□□□ -0.43
LIME1-210ENST00000621325 SPANXA2-OT1Q8N9U9 137 aa12.35□□□□□ -0.43
LIME1-210ENST00000621325 KMT2CQ8NEZ4 4911 aaKnown RBP12.35□□□□□ -0.43
LIME1-210ENST00000621325 LINC00313P59037 77 aa12.33□□□□□ -0.44
LIME1-210ENST00000621325 H0Y9P7 68 aa12.32□□□□□ -0.44
LIME1-210ENST00000621325 SMR3BP02814 79 aaPredicted RBP12.32□□□□□ -0.44
LIME1-210ENST00000621325 COA5Q86WW8 74 aa12.32□□□□□ -0.44
LIME1-210ENST00000621325 PLA2G1BP04054 148 aaKnown RBP12.3□□□□□ -0.44
LIME1-210ENST00000621325 SPINK7P58062 85 aa12.3□□□□□ -0.44
LIME1-210ENST00000621325 APOBP04114 4563 aaKnown RBP12.27□□□□□ -0.44
LIME1-210ENST00000621325 ADM2Q7Z4H4 148 aa12.27□□□□□ -0.44
LIME1-210ENST00000621325 FAT1Q14517 4588 aa12.26□□□□□ -0.45
LIME1-210ENST00000621325 SPAG11AQ6PDA7 123 aa12.26□□□□□ -0.45
LIME1-210ENST00000621325 MRPL34Q9BQ48 92 aaKnown RBP12.25□□□□□ -0.45
LIME1-210ENST00000621325 PRR26Q8N8Z3 221 aa12.23□□□□□ -0.45
LIME1-210ENST00000621325 LINC01554Q52M75 96 aa12.22□□□□□ -0.45
LIME1-210ENST00000621325 TYMSOSQ8TAI1 123 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 TP53AIP1Q9HCN2 124 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 LINC01558Q9Y6Z2 57 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 H3BPC8 53 aa12.19□□□□□ -0.46
LIME1-210ENST00000621325 KRTAP10-4P60372 401 aaPredicted RBP12.13□□□□□ -0.47
LIME1-210ENST00000621325 IGLV7-46A0A075B6I9 117 aa12.1□□□□□ -0.47
LIME1-210ENST00000621325 Q5W150 140 aa12.08□□□□□ -0.48
LIME1-210ENST00000621325 SPINK1P00995 79 aa12.07□□□□□ -0.48
LIME1-210ENST00000621325 PCOTHQ58A44 107 aa12.06□□□□□ -0.48
LIME1-210ENST00000621325 LINC00304Q8N9R0 145 aa12.04□□□□□ -0.48
LIME1-210ENST00000621325 RYR3Q15413 4870 aa12.01□□□□□ -0.49
LIME1-210ENST00000621325 KRTAP13-3Q3SY46 172 aa12.01□□□□□ -0.49
LIME1-210ENST00000621325 KRTAP16-1A8MUX0 517 aa11.99□□□□□ -0.49
LIME1-210ENST00000621325 PKHD1L1Q86WI1 4243 aa11.96□□□□□ -0.49
LIME1-210ENST00000621325 RETNLBQ9BQ08 111 aa11.95□□□□□ -0.5
LIME1-210ENST00000621325 HRES1P13985 223 aa11.94□□□□□ -0.5
LIME1-210ENST00000621325 RPS29P62273 56 aaKnown RBP11.9□□□□□ -0.5
LIME1-210ENST00000621325 HSPG2P98160 4391 aa11.87□□□□□ -0.51
LIME1-210ENST00000621325 FAM229AH3BQW9 127 aa11.86□□□□□ -0.51
LIME1-210ENST00000621325 CSAG1Q6PB30 78 aa11.81□□□□□ -0.52
LIME1-210ENST00000621325 LRP1Q07954 4544 aaKnown RBP11.79□□□□□ -0.52
LIME1-210ENST00000621325 Q5VSD8 79 aa11.76□□□□□ -0.53
LIME1-210ENST00000621325 RYR1P21817 5038 aa11.76□□□□□ -0.53
LIME1-210ENST00000621325 IGKV2-30P06310 120 aa11.75□□□□□ -0.53
LIME1-210ENST00000621325 KRTAP17-1Q9BYP8 105 aa11.75□□□□□ -0.53
LIME1-210ENST00000621325 C9orf92A6NGG3 77 aa11.72□□□□□ -0.53
LIME1-210ENST00000621325 FLG2Q5D862 2391 aaPredicted RBP11.72□□□□□ -0.53
LIME1-210ENST00000621325 TNXBP22105 4242 aa11.7□□□□□ -0.54
LIME1-210ENST00000621325 Q8N1X5 172 aa11.69□□□□□ -0.54
LIME1-210ENST00000621325 KIAA1109Q2LD37 5005 aa11.69□□□□□ -0.54
LIME1-210ENST00000621325 IGKV2D-30A0A075B6S6 120 aa11.68□□□□□ -0.54
LIME1-210ENST00000621325 SPATA8Q6RVD6 105 aa11.65□□□□□ -0.55
LIME1-210ENST00000621325 KRTAP10-8P60410 259 aa11.62□□□□□ -0.55
LIME1-210ENST00000621325 FAT3Q8TDW7 4589 aa11.59□□□□□ -0.55
LIME1-210ENST00000621325 EPPK1P58107 5090 aaKnown RBP11.59□□□□□ -0.55
LIME1-210ENST00000621325 DMAC1Q96GE9 116 aa11.57□□□□□ -0.56
LIME1-210ENST00000621325 C20orf166-AS1Q96NR2 134 aa11.56□□□□□ -0.56
LIME1-210ENST00000621325 A8MUU9 505 aa11.56□□□□□ -0.56
LIME1-210ENST00000621325 A0A1B0GU69 56 aa11.55□□□□□ -0.56
LIME1-210ENST00000621325 MIR22HGQ0VDD5 57 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms