RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RBM3P98179 157 aaKnown RBP5.96□□□□□ -1.45
UPF3B-204ENST00000619445 DSCR8Q96T75 97 aa5.96□□□□□ -1.45
UPF3B-204ENST00000619445 USH2AO75445 5202 aa5.96□□□□□ -1.46
UPF3B-204ENST00000619445 A0A1B0GV72 72 aa5.95□□□□□ -1.46
UPF3B-204ENST00000619445 A0A1B0GVX0 72 aa5.95□□□□□ -1.46
UPF3B-204ENST00000619445 HRES1P13985 223 aa5.95□□□□□ -1.46
UPF3B-204ENST00000619445 DEFB116Q30KQ4 102 aa5.95□□□□□ -1.46
UPF3B-204ENST00000619445 NOTCH2NLQ7Z3S9 236 aa5.94□□□□□ -1.46
UPF3B-204ENST00000619445 K7ERJ3 54 aa5.93□□□□□ -1.46
UPF3B-204ENST00000619445 VPS25Q9BRG1 176 aa5.93□□□□□ -1.46
UPF3B-204ENST00000619445 MT2AP02795 61 aa5.93□□□□□ -1.46
UPF3B-204ENST00000619445 SCGB1C2P0DMR2 95 aa5.93□□□□□ -1.46
UPF3B-204ENST00000619445 UQCR10Q9UDW1 63 aa5.93□□□□□ -1.46
UPF3B-204ENST00000619445 NDUFB1O75438 58 aa5.92□□□□□ -1.46
UPF3B-204ENST00000619445 A0A1B0GW54 56 aa5.91□□□□□ -1.46
UPF3B-204ENST00000619445 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.91□□□□□ -1.46
UPF3B-204ENST00000619445 C9JAW5 83 aa5.91□□□□□ -1.46
UPF3B-204ENST00000619445 ZCCHC13Q8WW36 166 aaKnown RBP5.91□□□□□ -1.46
UPF3B-204ENST00000619445 SSPOA2VEC9 5147 aa5.9□□□□□ -1.46
UPF3B-204ENST00000619445 KRTAP10-10P60014 251 aa5.9□□□□□ -1.47
UPF3B-204ENST00000619445 PYY3Q5JQD4 70 aa5.9□□□□□ -1.47
UPF3B-204ENST00000619445 KRTAP9-7A8MTY7 169 aa5.89□□□□□ -1.47
UPF3B-204ENST00000619445 BAALC-AS2P0C853 105 aa5.87□□□□□ -1.47
UPF3B-204ENST00000619445 SPINK7P58062 85 aa5.87□□□□□ -1.47
UPF3B-204ENST00000619445 Q6ZQT0 140 aa5.87□□□□□ -1.47
UPF3B-204ENST00000619445 JMJD7-PLA2G4BH0Y9G9 81 aa5.86□□□□□ -1.47
UPF3B-204ENST00000619445 MT1FP04733 61 aa5.86□□□□□ -1.47
UPF3B-204ENST00000619445 PDE6GP18545 87 aa5.86□□□□□ -1.47
UPF3B-204ENST00000619445 Q8N9P0 234 aaPredicted RBP5.86□□□□□ -1.47
UPF3B-204ENST00000619445 LINC00846Q9NV44 126 aa5.86□□□□□ -1.47
UPF3B-204ENST00000619445 LYRM7Q5U5X0 104 aa5.84□□□□□ -1.47
UPF3B-204ENST00000619445 KRTAP9-3Q9BYQ3 159 aa5.84□□□□□ -1.47
UPF3B-204ENST00000619445 KRTAP4-8Q9BYQ9 185 aa5.84□□□□□ -1.47
UPF3B-204ENST00000619445 FCGBPQ9Y6R7 5405 aaPredicted RBP5.84□□□□□ -1.47
UPF3B-204ENST00000619445 A8MWP4 228 aa5.83□□□□□ -1.48
UPF3B-204ENST00000619445 LOC110117498A0A087WWA1 95 aa5.81□□□□□ -1.48
UPF3B-204ENST00000619445 ATXN8Q156A1 80 aa5.81□□□□□ -1.48
UPF3B-204ENST00000619445 C8orf17Q9NRJ1 99 aa5.81□□□□□ -1.48
UPF3B-204ENST00000619445 M0R143 59 aa5.8□□□□□ -1.48
UPF3B-204ENST00000619445 WFDC13Q8IUB5 93 aa5.8□□□□□ -1.48
UPF3B-204ENST00000619445 KRTAP19-1Q8IUB9 90 aa5.8□□□□□ -1.48
UPF3B-204ENST00000619445 Q6ZVQ6 151 aa5.78□□□□□ -1.48
UPF3B-204ENST00000619445 IGKV3D-7A0A0C4DH55 119 aa5.76□□□□□ -1.49
UPF3B-204ENST00000619445 NREPQ16612 68 aa5.76□□□□□ -1.49
UPF3B-204ENST00000619445 PRR15Q8IV56 129 aa5.76□□□□□ -1.49
UPF3B-204ENST00000619445 TMEM254Q8TBM7 123 aa5.73□□□□□ -1.49
UPF3B-204ENST00000619445 MRPL34Q9BQ48 92 aaKnown RBP5.72□□□□□ -1.49
UPF3B-204ENST00000619445 C14orf132Q9NPU4 83 aa5.72□□□□□ -1.49
UPF3B-204ENST00000619445 KRTAP19-6Q3LI70 58 aa5.7□□□□□ -1.5
UPF3B-204ENST00000619445 H1FX-AS1Q4G0G2 97 aa5.7□□□□□ -1.5
UPF3B-204ENST00000619445 hDV103S1A0JD37 113 aa5.69□□□□□ -1.5
UPF3B-204ENST00000619445 MMP24-AS1A0A0U1RRL7 71 aa5.68□□□□□ -1.5
UPF3B-204ENST00000619445 NDUFS5O43920 106 aa5.67□□□□□ -1.5
UPF3B-204ENST00000619445 NAA38Q9BRA0 125 aaKnown RBP5.67□□□□□ -1.5
UPF3B-204ENST00000619445 MACF1Q9UPN3 7388 aaKnown RBP5.66□□□□□ -1.5
UPF3B-204ENST00000619445 H3BT86 120 aa5.65□□□□□ -1.51
UPF3B-204ENST00000619445 C7orf65Q6ZTY9 151 aa5.65□□□□□ -1.51
UPF3B-204ENST00000619445 K7EQZ3 153 aa5.64□□□□□ -1.51
UPF3B-204ENST00000619445 BPY2O14599 106 aa5.64□□□□□ -1.51
UPF3B-204ENST00000619445 SYNE2Q8WXH0 6885 aaKnown RBP5.62□□□□□ -1.51
UPF3B-204ENST00000619445 SMIM6P0DI80 62 aa5.62□□□□□ -1.51
UPF3B-204ENST00000619445 IGKV2D-30A0A075B6S6 120 aa5.61□□□□□ -1.51
UPF3B-204ENST00000619445 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
UPF3B-204ENST00000619445 IGKV2-30P06310 120 aa5.61□□□□□ -1.51
UPF3B-204ENST00000619445 TSTD3H0UI37 97 aa5.6□□□□□ -1.51
UPF3B-204ENST00000619445 PCP4P48539 62 aa5.59□□□□□ -1.51
UPF3B-204ENST00000619445 LCE3BQ5TA77 95 aa5.58□□□□□ -1.52
UPF3B-204ENST00000619445 CASC2Q6XLA1 102 aa5.57□□□□□ -1.52
UPF3B-204ENST00000619445 CXCL6P80162 114 aa5.56□□□□□ -1.52
UPF3B-204ENST00000619445 BATFQ16520 125 aa5.56□□□□□ -1.52
UPF3B-204ENST00000619445 A0A1W2PPM0 123 aa5.55□□□□□ -1.52
UPF3B-204ENST00000619445 HCG22E2RYF7 251 aa5.55□□□□□ -1.52
UPF3B-204ENST00000619445 Q5W150 140 aa5.55□□□□□ -1.52
UPF3B-204ENST00000619445 KRTAP6-3Q3LI67 103 aa5.53□□□□□ -1.52
UPF3B-204ENST00000619445 C4orf26Q17RF5 130 aa5.51□□□□□ -1.53
UPF3B-204ENST00000619445 KRTAP4-12Q9BQ66 201 aa5.51□□□□□ -1.53
UPF3B-204ENST00000619445 UBL5Q9BZL1 73 aa5.5□□□□□ -1.53
UPF3B-204ENST00000619445 FAM236AA0A1B0GUQ0 79 aa5.49□□□□□ -1.53
UPF3B-204ENST00000619445 FAM236BA0A1B0GV22 79 aa5.49□□□□□ -1.53
UPF3B-204ENST00000619445 TAX1BP3O14907 124 aa5.49□□□□□ -1.53
UPF3B-204ENST00000619445 Q8N9L7 120 aa5.49□□□□□ -1.53
UPF3B-204ENST00000619445 KRTAP19-4Q3LI73 84 aa5.48□□□□□ -1.53
UPF3B-204ENST00000619445 CSAG1Q6PB30 78 aa5.47□□□□□ -1.53
UPF3B-204ENST00000619445 C5orf47Q569G3 176 aa5.45□□□□□ -1.54
UPF3B-204ENST00000619445 SPCS1Q9Y6A9 102 aa5.45□□□□□ -1.54
UPF3B-204ENST00000619445 S4R3F8 94 aa5.45□□□□□ -1.54
UPF3B-204ENST00000619445 TP53AIP1Q9HCN2 124 aa5.44□□□□□ -1.54
UPF3B-204ENST00000619445 KRTAP9-9Q9BYP9 154 aa5.43□□□□□ -1.54
UPF3B-204ENST00000619445 KRTAP9-4Q9BYQ2 154 aa5.43□□□□□ -1.54
UPF3B-204ENST00000619445 C1orf64Q8NEQ6 169 aa5.42□□□□□ -1.54
UPF3B-204ENST00000619445 A6NN06 94 aa5.42□□□□□ -1.54
UPF3B-204ENST00000619445 Q5VV11 94 aa5.42□□□□□ -1.54
UPF3B-204ENST00000619445 KRTAP4-8A0A0G2JLE6 195 aa5.41□□□□□ -1.54
UPF3B-204ENST00000619445 SPRR2GQ9BYE4 73 aa5.4□□□□□ -1.55
UPF3B-204ENST00000619445 KRTAP3-1Q9BYR8 98 aa5.39□□□□□ -1.55
UPF3B-204ENST00000619445 LCA10Q71F78 164 aa5.38□□□□□ -1.55
UPF3B-204ENST00000619445 KRTAP19-8Q3LI54 63 aa5.37□□□□□ -1.55
UPF3B-204ENST00000619445 MT1BP07438 61 aa5.35□□□□□ -1.55
UPF3B-204ENST00000619445 KLKP1Q107X0 134 aa5.35□□□□□ -1.55
UPF3B-204ENST00000619445 COL5A1-AS1Q5SY13 56 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms