RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MTURNQ8N3F0 131 aa6.81□□□□□ -1.32
TRIM28-211ENST00000597968 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.8□□□□□ -1.32
TRIM28-211ENST00000597968 C8orf87E5RJ46 101 aa6.8□□□□□ -1.32
TRIM28-211ENST00000597968 HRES1P13985 223 aa6.8□□□□□ -1.32
TRIM28-211ENST00000597968 A0A1B0GV90 55 aa6.79□□□□□ -1.32
TRIM28-211ENST00000597968 TSTD3H0UI37 97 aa6.79□□□□□ -1.32
TRIM28-211ENST00000597968 VPS25Q9BRG1 176 aa6.79□□□□□ -1.32
TRIM28-211ENST00000597968 KRTAP9-7A8MTY7 169 aa6.78□□□□□ -1.32
TRIM28-211ENST00000597968 MT2AP02795 61 aa6.78□□□□□ -1.32
TRIM28-211ENST00000597968 IGHV6-1A0A0B4J1U7 121 aa6.77□□□□□ -1.33
TRIM28-211ENST00000597968 RBM3P98179 157 aaKnown RBP6.76□□□□□ -1.33
TRIM28-211ENST00000597968 J3KT08 172 aa6.75□□□□□ -1.33
TRIM28-211ENST00000597968 BAALC-AS2P0C853 105 aa6.75□□□□□ -1.33
TRIM28-211ENST00000597968 A0A1B0GVX0 72 aa6.74□□□□□ -1.33
TRIM28-211ENST00000597968 DSCR8Q96T75 97 aa6.74□□□□□ -1.33
TRIM28-211ENST00000597968 NAA38Q9BRA0 125 aaKnown RBP6.73□□□□□ -1.33
TRIM28-211ENST00000597968 KRTAP9-3Q9BYQ3 159 aa6.72□□□□□ -1.33
TRIM28-211ENST00000597968 A0A1B0GW54 56 aa6.71□□□□□ -1.34
TRIM28-211ENST00000597968 MT1FP04733 61 aa6.71□□□□□ -1.34
TRIM28-211ENST00000597968 KRTAP10-10P60014 251 aa6.71□□□□□ -1.34
TRIM28-211ENST00000597968 ZCCHC13Q8WW36 166 aaKnown RBP6.7□□□□□ -1.34
TRIM28-211ENST00000597968 C9JAW5 83 aa6.69□□□□□ -1.34
TRIM28-211ENST00000597968 M0R143 59 aa6.68□□□□□ -1.34
TRIM28-211ENST00000597968 LCE2BO14633 110 aa6.68□□□□□ -1.34
TRIM28-211ENST00000597968 NDUFB1O75438 58 aa6.68□□□□□ -1.34
TRIM28-211ENST00000597968 Q8N9P0 234 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-211ENST00000597968 LINC00846Q9NV44 126 aa6.68□□□□□ -1.34
TRIM28-211ENST00000597968 FCGBPQ9Y6R7 5405 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-211ENST00000597968 PCP4P48539 62 aa6.67□□□□□ -1.34
TRIM28-211ENST00000597968 SPINK7P58062 85 aa6.67□□□□□ -1.34
TRIM28-211ENST00000597968 Q6ZQT0 140 aa6.67□□□□□ -1.34
TRIM28-211ENST00000597968 ATXN8Q156A1 80 aa6.65□□□□□ -1.34
TRIM28-211ENST00000597968 KRTAP19-1Q8IUB9 90 aa6.65□□□□□ -1.34
TRIM28-211ENST00000597968 A8MWP4 228 aa6.63□□□□□ -1.35
TRIM28-211ENST00000597968 JMJD7-PLA2G4BH0Y9G9 81 aa6.62□□□□□ -1.35
TRIM28-211ENST00000597968 PDE6GP18545 87 aa6.62□□□□□ -1.35
TRIM28-211ENST00000597968 LOC110117498A0A087WWA1 95 aa6.6□□□□□ -1.35
TRIM28-211ENST00000597968 C14orf132Q9NPU4 83 aa6.6□□□□□ -1.35
TRIM28-211ENST00000597968 C8orf17Q9NRJ1 99 aa6.59□□□□□ -1.35
TRIM28-211ENST00000597968 IGKV3D-7A0A0C4DH55 119 aa6.58□□□□□ -1.36
TRIM28-211ENST00000597968 SVIPQ8NHG7 77 aa6.58□□□□□ -1.36
TRIM28-211ENST00000597968 BATFQ16520 125 aa6.57□□□□□ -1.36
TRIM28-211ENST00000597968 LYRM7Q5U5X0 104 aa6.57□□□□□ -1.36
TRIM28-211ENST00000597968 KRTAP19-6Q3LI70 58 aa6.56□□□□□ -1.36
TRIM28-211ENST00000597968 WFDC13Q8IUB5 93 aa6.56□□□□□ -1.36
TRIM28-211ENST00000597968 COL5A1-AS1Q5SY13 56 aa6.55□□□□□ -1.36
TRIM28-211ENST00000597968 Q6ZVQ6 151 aa6.55□□□□□ -1.36
TRIM28-211ENST00000597968 PRR15Q8IV56 129 aa6.53□□□□□ -1.36
TRIM28-211ENST00000597968 NREPQ16612 68 aa6.52□□□□□ -1.37
TRIM28-211ENST00000597968 TMEM254Q8TBM7 123 aa6.51□□□□□ -1.37
TRIM28-211ENST00000597968 MRPL34Q9BQ48 92 aaKnown RBP6.49□□□□□ -1.37
TRIM28-211ENST00000597968 MACF1Q9UPN3 7388 aaKnown RBP6.48□□□□□ -1.37
TRIM28-211ENST00000597968 C9orf118A6NHY6 69 aa6.48□□□□□ -1.37
TRIM28-211ENST00000597968 H1FX-AS1Q4G0G2 97 aa6.48□□□□□ -1.37
TRIM28-211ENST00000597968 MMP24-AS1A0A0U1RRL7 71 aa6.47□□□□□ -1.37
TRIM28-211ENST00000597968 TAX1BP3O14907 124 aa6.47□□□□□ -1.37
TRIM28-211ENST00000597968 A0A1W2PPM0 123 aa6.45□□□□□ -1.38
TRIM28-211ENST00000597968 K7EQZ3 153 aa6.45□□□□□ -1.38
TRIM28-211ENST00000597968 hDV103S1A0JD37 113 aa6.44□□□□□ -1.38
TRIM28-211ENST00000597968 H3BT86 120 aa6.43□□□□□ -1.38
TRIM28-211ENST00000597968 NDUFS5O43920 106 aa6.42□□□□□ -1.38
TRIM28-211ENST00000597968 BPY2O14599 106 aa6.39□□□□□ -1.39
TRIM28-211ENST00000597968 C7orf65Q6ZTY9 151 aa6.39□□□□□ -1.39
TRIM28-211ENST00000597968 Q8N9L7 120 aa6.39□□□□□ -1.39
TRIM28-211ENST00000597968 K7ERU9 68 aa6.38□□□□□ -1.39
TRIM28-211ENST00000597968 Q5W150 140 aa6.38□□□□□ -1.39
TRIM28-211ENST00000597968 SYNE2Q8WXH0 6885 aaKnown RBP6.38□□□□□ -1.39
TRIM28-211ENST00000597968 SCGB1A1P11684 91 aa6.37□□□□□ -1.39
TRIM28-211ENST00000597968 SMCPP49901 116 aaPredicted RBP6.36□□□□□ -1.39
TRIM28-211ENST00000597968 SPCS1Q9Y6A9 102 aa6.36□□□□□ -1.39
TRIM28-211ENST00000597968 IGKV2D-30A0A075B6S6 120 aa6.35□□□□□ -1.39
TRIM28-211ENST00000597968 IGKV2-30P06310 120 aa6.35□□□□□ -1.39
TRIM28-211ENST00000597968 KRTAP6-3Q3LI67 103 aa6.35□□□□□ -1.39
TRIM28-211ENST00000597968 HCG22E2RYF7 251 aa6.31□□□□□ -1.4
TRIM28-211ENST00000597968 CASC2Q6XLA1 102 aa6.31□□□□□ -1.4
TRIM28-211ENST00000597968 CXCL6P80162 114 aa6.3□□□□□ -1.4
TRIM28-211ENST00000597968 PRO0461Q9UI25 63 aa6.28□□□□□ -1.4
TRIM28-211ENST00000597968 GTF2H5Q6ZYL4 71 aa6.27□□□□□ -1.41
TRIM28-211ENST00000597968 C4orf26Q17RF5 130 aa6.26□□□□□ -1.41
TRIM28-211ENST00000597968 K7EP34 96 aa6.23□□□□□ -1.41
TRIM28-211ENST00000597968 UBL5Q9BZL1 73 aa6.22□□□□□ -1.41
TRIM28-211ENST00000597968 FAM236AA0A1B0GUQ0 79 aa6.2□□□□□ -1.42
TRIM28-211ENST00000597968 FAM236BA0A1B0GV22 79 aa6.2□□□□□ -1.42
TRIM28-211ENST00000597968 CSAG1Q6PB30 78 aa6.19□□□□□ -1.42
TRIM28-211ENST00000597968 KRTAP3-1Q9BYR8 98 aa6.19□□□□□ -1.42
TRIM28-211ENST00000597968 C5orf47Q569G3 176 aa6.18□□□□□ -1.42
TRIM28-211ENST00000597968 SPRR2GQ9BYE4 73 aa6.18□□□□□ -1.42
TRIM28-211ENST00000597968 S4R3F8 94 aa6.18□□□□□ -1.42
TRIM28-211ENST00000597968 A6NN06 94 aa6.17□□□□□ -1.42
TRIM28-211ENST00000597968 J3QR89 54 aa6.17□□□□□ -1.42
TRIM28-211ENST00000597968 Q5VV11 94 aa6.17□□□□□ -1.42
TRIM28-211ENST00000597968 TP53AIP1Q9HCN2 124 aa6.16□□□□□ -1.42
TRIM28-211ENST00000597968 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.42
TRIM28-211ENST00000597968 C1orf64Q8NEQ6 169 aa6.14□□□□□ -1.43
TRIM28-211ENST00000597968 F8W1H4 67 aa6.13□□□□□ -1.43
TRIM28-211ENST00000597968 MT1BP07438 61 aa6.13□□□□□ -1.43
TRIM28-211ENST00000597968 ETDBQ3ZM63 59 aa6.12□□□□□ -1.43
TRIM28-211ENST00000597968 LCA10Q71F78 164 aa6.12□□□□□ -1.43
TRIM28-211ENST00000597968 MUC12Q9UKN1 5478 aa6.09□□□□□ -1.43
TRIM28-211ENST00000597968 KLKP1Q107X0 134 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms