RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 PRR15Q8IV56 129 aa8.26□□□□□ -1.09
SHKBP1-211ENST00000595945 RETNLBQ9BQ08 111 aa8.26□□□□□ -1.09
SHKBP1-211ENST00000595945 A0A1B0GVX0 72 aa8.24□□□□□ -1.09
SHKBP1-211ENST00000595945 NDUFB1O75438 58 aa8.24□□□□□ -1.09
SHKBP1-211ENST00000595945 FP248Q71RG6 208 aaPredicted RBP8.22□□□□□ -1.09
SHKBP1-211ENST00000595945 HIST1H4AP62805 103 aaKnown RBP8.21□□□□□ -1.1
SHKBP1-211ENST00000595945 A0A087WVE0 104 aa8.2□□□□□ -1.1
SHKBP1-211ENST00000595945 IGHV6-1A0A0B4J1U7 121 aa8.19□□□□□ -1.1
SHKBP1-211ENST00000595945 NOTCH2NLQ7Z3S9 236 aa8.19□□□□□ -1.1
SHKBP1-211ENST00000595945 C8orf17Q9NRJ1 99 aa8.19□□□□□ -1.1
SHKBP1-211ENST00000595945 MMP24-AS1A0A0U1RRL7 71 aa8.18□□□□□ -1.1
SHKBP1-211ENST00000595945 C8orf87E5RJ46 101 aa8.18□□□□□ -1.1
SHKBP1-211ENST00000595945 HCG22E2RYF7 251 aa8.15□□□□□ -1.1
SHKBP1-211ENST00000595945 LINC00313P59037 77 aa8.14□□□□□ -1.11
SHKBP1-211ENST00000595945 IGLV7-46A0A075B6I9 117 aa8.13□□□□□ -1.11
SHKBP1-211ENST00000595945 KRTAP16-1A8MUX0 517 aa8.12□□□□□ -1.11
SHKBP1-211ENST00000595945 WFDC13Q8IUB5 93 aa8.12□□□□□ -1.11
SHKBP1-211ENST00000595945 hDV103S1A0JD37 113 aa8.11□□□□□ -1.11
SHKBP1-211ENST00000595945 PRR4Q16378 134 aa8.1□□□□□ -1.11
SHKBP1-211ENST00000595945 CASC2Q6XLA1 102 aa8.1□□□□□ -1.11
SHKBP1-211ENST00000595945 TMEM254Q8TBM7 123 aa8.1□□□□□ -1.11
SHKBP1-211ENST00000595945 FAM236AA0A1B0GUQ0 79 aa8.09□□□□□ -1.11
SHKBP1-211ENST00000595945 FAM236BA0A1B0GV22 79 aa8.09□□□□□ -1.11
SHKBP1-211ENST00000595945 KRTAP13-3Q3SY46 172 aa8.09□□□□□ -1.11
SHKBP1-211ENST00000595945 HERC1Q15751 4861 aa8.08□□□□□ -1.12
SHKBP1-211ENST00000595945 C9orf92A6NGG3 77 aa8.07□□□□□ -1.12
SHKBP1-211ENST00000595945 MRPL34Q9BQ48 92 aaKnown RBP8.07□□□□□ -1.12
SHKBP1-211ENST00000595945 SCGB1A1P11684 91 aa8.06□□□□□ -1.12
SHKBP1-211ENST00000595945 TPRXLQ17RH7 258 aa8.04□□□□□ -1.12
SHKBP1-211ENST00000595945 Q8N9P0 234 aaPredicted RBP8.04□□□□□ -1.12
SHKBP1-211ENST00000595945 C20orf166-AS1Q96NR2 134 aa8.01□□□□□ -1.13
SHKBP1-211ENST00000595945 HMCN2Q8NDA2 5059 aa8□□□□□ -1.13
SHKBP1-211ENST00000595945 A8MUU9 505 aa8□□□□□ -1.13
SHKBP1-211ENST00000595945 ATOX1O00244 68 aa7.99□□□□□ -1.13
SHKBP1-211ENST00000595945 XP32Q5T750 250 aa7.99□□□□□ -1.13
SHKBP1-211ENST00000595945 OCR1Q9BZK8 76 aa7.99□□□□□ -1.13
SHKBP1-211ENST00000595945 Q75L30 129 aa7.95□□□□□ -1.14
SHKBP1-211ENST00000595945 SMIM20Q8N5G0 67 aa7.95□□□□□ -1.14
SHKBP1-211ENST00000595945 TP53AIP1Q9HCN2 124 aa7.95□□□□□ -1.14
SHKBP1-211ENST00000595945 LRP2P98164 4655 aa7.94□□□□□ -1.14
SHKBP1-211ENST00000595945 NDUFS5O43920 106 aa7.94□□□□□ -1.14
SHKBP1-211ENST00000595945 LPAP08519 4548 aa7.93□□□□□ -1.14
SHKBP1-211ENST00000595945 TRAV7A0A075B6U4 112 aa7.93□□□□□ -1.14
SHKBP1-211ENST00000595945 UQCRQO14949 82 aa7.92□□□□□ -1.14
SHKBP1-211ENST00000595945 RPL37P61927 97 aaKnown RBP7.91□□□□□ -1.14
SHKBP1-211ENST00000595945 SERP2Q8N6R1 65 aa7.9□□□□□ -1.14
SHKBP1-211ENST00000595945 Q5W150 140 aa7.89□□□□□ -1.15
SHKBP1-211ENST00000595945 ZCCHC13Q8WW36 166 aaKnown RBP7.88□□□□□ -1.15
SHKBP1-211ENST00000595945 ANAPC13Q9BS18 74 aa7.87□□□□□ -1.15
SHKBP1-211ENST00000595945 TRAV22A0A0B4J277 110 aa7.84□□□□□ -1.15
SHKBP1-211ENST00000595945 C5orf47Q569G3 176 aa7.84□□□□□ -1.15
SHKBP1-211ENST00000595945 COX7CP15954 63 aa7.83□□□□□ -1.16
SHKBP1-211ENST00000595945 H0Y9P7 68 aa7.82□□□□□ -1.16
SHKBP1-211ENST00000595945 ATP11AUNQ6ZP68 121 aa7.81□□□□□ -1.16
SHKBP1-211ENST00000595945 MUC17Q685J3 4493 aa7.8□□□□□ -1.16
SHKBP1-211ENST00000595945 H3BPC8 53 aa7.78□□□□□ -1.16
SHKBP1-211ENST00000595945 MP68P56378 58 aa7.78□□□□□ -1.16
SHKBP1-211ENST00000595945 A0A0U1RQV1 116 aa7.77□□□□□ -1.17
SHKBP1-211ENST00000595945 PCOTHQ58A44 107 aa7.77□□□□□ -1.17
SHKBP1-211ENST00000595945 IGKV2-30P06310 120 aa7.75□□□□□ -1.17
SHKBP1-211ENST00000595945 LOC101927531A0A1B0GV80 90 aa7.74□□□□□ -1.17
SHKBP1-211ENST00000595945 SEC61BP60468 96 aaKnown RBP7.74□□□□□ -1.17
SHKBP1-211ENST00000595945 C20orf197Q8N268 126 aa7.74□□□□□ -1.17
SHKBP1-211ENST00000595945 LINC00208Q96KT6 92 aa7.74□□□□□ -1.17
SHKBP1-211ENST00000595945 CCDC179H3BU77 68 aa7.73□□□□□ -1.17
SHKBP1-211ENST00000595945 C1orf64Q8NEQ6 169 aa7.73□□□□□ -1.17
SHKBP1-211ENST00000595945 KLKP1Q107X0 134 aa7.72□□□□□ -1.17
SHKBP1-211ENST00000595945 PCP4P48539 62 aa7.7□□□□□ -1.18
SHKBP1-211ENST00000595945 CYP4F30PQ9H0H9 118 aa7.7□□□□□ -1.18
SHKBP1-211ENST00000595945 SNURFQ9Y675 71 aa7.7□□□□□ -1.18
SHKBP1-211ENST00000595945 C7orf65Q6ZTY9 151 aa7.69□□□□□ -1.18
SHKBP1-211ENST00000595945 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
SHKBP1-211ENST00000595945 SPINK7P58062 85 aa7.67□□□□□ -1.18
SHKBP1-211ENST00000595945 CYSTM1Q9H1C7 97 aa7.65□□□□□ -1.18
SHKBP1-211ENST00000595945 KRTAP4-1Q9BYQ7 146 aa7.64□□□□□ -1.19
SHKBP1-211ENST00000595945 NDUFC1O43677 76 aa7.59□□□□□ -1.19
SHKBP1-211ENST00000595945 HRES1P13985 223 aa7.59□□□□□ -1.19
SHKBP1-211ENST00000595945 H7BZZ5 65 aa7.58□□□□□ -1.2
SHKBP1-211ENST00000595945 UBR4Q5T4S7 5183 aa7.57□□□□□ -1.2
SHKBP1-211ENST00000595945 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
SHKBP1-211ENST00000595945 MPLKIPQ8TAP9 179 aa7.55□□□□□ -1.2
SHKBP1-211ENST00000595945 SPANXA2-OT1Q8N9U9 137 aa7.51□□□□□ -1.21
SHKBP1-211ENST00000595945 C4orf26Q17RF5 130 aa7.5□□□□□ -1.21
SHKBP1-211ENST00000595945 COX6B2Q6YFQ2 88 aa7.47□□□□□ -1.21
SHKBP1-211ENST00000595945 KRTAP3-1Q9BYR8 98 aa7.46□□□□□ -1.22
SHKBP1-211ENST00000595945 TMEM258P61165 79 aa7.45□□□□□ -1.22
SHKBP1-211ENST00000595945 KRTAP19-2Q3LHN2 52 aa7.44□□□□□ -1.22
SHKBP1-211ENST00000595945 DMAC1Q96GE9 116 aa7.43□□□□□ -1.22
SHKBP1-211ENST00000595945 RBM12B-AS1Q9P1G2 102 aa7.43□□□□□ -1.22
SHKBP1-211ENST00000595945 MUC2Q02817 5179 aa7.41□□□□□ -1.22
SHKBP1-211ENST00000595945 FAM236DA0A1B0GTK5 79 aa7.4□□□□□ -1.22
SHKBP1-211ENST00000595945 A8MUN3 132 aa7.4□□□□□ -1.22
SHKBP1-211ENST00000595945 FAM236CP0DP71 79 aa7.4□□□□□ -1.22
SHKBP1-211ENST00000595945 ATP5EP56381 51 aaPredicted RBP7.39□□□□□ -1.23
SHKBP1-211ENST00000595945 H1FX-AS1Q4G0G2 97 aa7.34□□□□□ -1.23
SHKBP1-211ENST00000595945 FLGP20930 4061 aaPredicted RBP7.33□□□□□ -1.24
SHKBP1-211ENST00000595945 ACYP2P14621 99 aa7.33□□□□□ -1.24
SHKBP1-211ENST00000595945 LCE2CQ5TA81 110 aa7.32□□□□□ -1.24
SHKBP1-211ENST00000595945 FAT4Q6V0I7 4981 aa7.3□□□□□ -1.24
SHKBP1-211ENST00000595945 COA5Q86WW8 74 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms