RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CDIP1Q9H305 208 aa6.02□□□□□ -1.45
SS18-213ENST00000579640 A8MWP4 228 aa6.02□□□□□ -1.45
SS18-213ENST00000579640 NDUFB1O75438 58 aa6.02□□□□□ -1.45
SS18-213ENST00000579640 DSCR10P59022 87 aa6.01□□□□□ -1.45
SS18-213ENST00000579640 LCE2AQ5TA79 106 aaPredicted RBP6.01□□□□□ -1.45
SS18-213ENST00000579640 IGLV7-46A0A075B6I9 117 aa5.99□□□□□ -1.45
SS18-213ENST00000579640 PRR4Q16378 134 aa5.99□□□□□ -1.45
SS18-213ENST00000579640 A0A1B0GVX0 72 aa5.99□□□□□ -1.45
SS18-213ENST00000579640 IGKV3D-7A0A0C4DH55 119 aa5.98□□□□□ -1.45
SS18-213ENST00000579640 PRR15Q8IV56 129 aa5.98□□□□□ -1.45
SS18-213ENST00000579640 C8orf87E5RJ46 101 aa5.97□□□□□ -1.45
SS18-213ENST00000579640 K7EQZ3 153 aa5.97□□□□□ -1.45
SS18-213ENST00000579640 IGHV6-1A0A0B4J1U7 121 aa5.96□□□□□ -1.46
SS18-213ENST00000579640 LINC00313P59037 77 aa5.94□□□□□ -1.46
SS18-213ENST00000579640 TPRXLQ17RH7 258 aa5.94□□□□□ -1.46
SS18-213ENST00000579640 Q8N9L7 120 aa5.94□□□□□ -1.46
SS18-213ENST00000579640 KRTAP13-3Q3SY46 172 aa5.92□□□□□ -1.46
SS18-213ENST00000579640 C8orf17Q9NRJ1 99 aa5.92□□□□□ -1.46
SS18-213ENST00000579640 HIST1H4AP62805 103 aaKnown RBP5.92□□□□□ -1.46
SS18-213ENST00000579640 IMUPQ9GZP8 106 aa5.92□□□□□ -1.46
SS18-213ENST00000579640 HERC1Q15751 4861 aa5.92□□□□□ -1.46
SS18-213ENST00000579640 MT-ATP8P03928 68 aa5.91□□□□□ -1.46
SS18-213ENST00000579640 MMP24-AS1A0A0U1RRL7 71 aa5.9□□□□□ -1.46
SS18-213ENST00000579640 C9orf92A6NGG3 77 aa5.9□□□□□ -1.46
SS18-213ENST00000579640 NOTCH2NLQ7Z3S9 236 aa5.9□□□□□ -1.47
SS18-213ENST00000579640 HCG22E2RYF7 251 aa5.89□□□□□ -1.47
SS18-213ENST00000579640 hDV103S1A0JD37 113 aa5.88□□□□□ -1.47
SS18-213ENST00000579640 TMEM254Q8TBM7 123 aa5.88□□□□□ -1.47
SS18-213ENST00000579640 CASC2Q6XLA1 102 aa5.88□□□□□ -1.47
SS18-213ENST00000579640 KRTAP16-1A8MUX0 517 aa5.87□□□□□ -1.47
SS18-213ENST00000579640 WFDC13Q8IUB5 93 aa5.86□□□□□ -1.47
SS18-213ENST00000579640 A0A087WVE0 104 aa5.85□□□□□ -1.47
SS18-213ENST00000579640 MRPL34Q9BQ48 92 aaKnown RBP5.85□□□□□ -1.47
SS18-213ENST00000579640 XP32Q5T750 250 aa5.85□□□□□ -1.47
SS18-213ENST00000579640 C20orf166-AS1Q96NR2 134 aa5.84□□□□□ -1.47
SS18-213ENST00000579640 A8MUU9 505 aa5.83□□□□□ -1.48
SS18-213ENST00000579640 Q75L30 129 aa5.83□□□□□ -1.48
SS18-213ENST00000579640 Q8N9P0 234 aaPredicted RBP5.83□□□□□ -1.48
SS18-213ENST00000579640 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
SS18-213ENST00000579640 RPL37P61927 97 aaKnown RBP5.81□□□□□ -1.48
SS18-213ENST00000579640 NDUFS5O43920 106 aa5.79□□□□□ -1.48
SS18-213ENST00000579640 TP53AIP1Q9HCN2 124 aa5.78□□□□□ -1.48
SS18-213ENST00000579640 LPAP08519 4548 aa5.77□□□□□ -1.49
SS18-213ENST00000579640 FAM236AA0A1B0GUQ0 79 aa5.77□□□□□ -1.49
SS18-213ENST00000579640 FAM236BA0A1B0GV22 79 aa5.77□□□□□ -1.49
SS18-213ENST00000579640 SCGB1A1P11684 91 aa5.76□□□□□ -1.49
SS18-213ENST00000579640 ATP11AUNQ6ZP68 121 aa5.76□□□□□ -1.49
SS18-213ENST00000579640 SEC61BP60468 96 aaKnown RBP5.75□□□□□ -1.49
SS18-213ENST00000579640 ZCCHC13Q8WW36 166 aaKnown RBP5.74□□□□□ -1.49
SS18-213ENST00000579640 SMIM20Q8N5G0 67 aa5.73□□□□□ -1.49
SS18-213ENST00000579640 LRP2P98164 4655 aa5.72□□□□□ -1.49
SS18-213ENST00000579640 ATOX1O00244 68 aa5.72□□□□□ -1.49
SS18-213ENST00000579640 UQCRQO14949 82 aa5.72□□□□□ -1.49
SS18-213ENST00000579640 OCR1Q9BZK8 76 aa5.71□□□□□ -1.49
SS18-213ENST00000579640 PCOTHQ58A44 107 aa5.7□□□□□ -1.5
SS18-213ENST00000579640 KRTAP4-8Q9BYQ9 185 aa5.69□□□□□ -1.5
SS18-213ENST00000579640 MUC17Q685J3 4493 aa5.69□□□□□ -1.5
SS18-213ENST00000579640 Q5W150 140 aa5.68□□□□□ -1.5
SS18-213ENST00000579640 TRAV7A0A075B6U4 112 aa5.67□□□□□ -1.5
SS18-213ENST00000579640 TRAV22A0A0B4J277 110 aa5.67□□□□□ -1.5
SS18-213ENST00000579640 C5orf47Q569G3 176 aa5.66□□□□□ -1.5
SS18-213ENST00000579640 H0Y9P7 68 aa5.64□□□□□ -1.51
SS18-213ENST00000579640 MP68P56378 58 aa5.64□□□□□ -1.51
SS18-213ENST00000579640 SERP2Q8N6R1 65 aa5.64□□□□□ -1.51
SS18-213ENST00000579640 H3BPC8 53 aa5.62□□□□□ -1.51
SS18-213ENST00000579640 LOC101927531A0A1B0GV80 90 aa5.61□□□□□ -1.51
SS18-213ENST00000579640 C7orf65Q6ZTY9 151 aa5.61□□□□□ -1.51
SS18-213ENST00000579640 IGKV2-30P06310 120 aa5.6□□□□□ -1.51
SS18-213ENST00000579640 SPINK7P58062 85 aa5.6□□□□□ -1.51
SS18-213ENST00000579640 IGKV2D-30A0A075B6S6 120 aa5.6□□□□□ -1.51
SS18-213ENST00000579640 LINC00208Q96KT6 92 aa5.59□□□□□ -1.51
SS18-213ENST00000579640 ANAPC13Q9BS18 74 aa5.59□□□□□ -1.51
SS18-213ENST00000579640 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.58□□□□□ -1.52
SS18-213ENST00000579640 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
SS18-213ENST00000579640 C1orf64Q8NEQ6 169 aa5.58□□□□□ -1.52
SS18-213ENST00000579640 COX7CP15954 63 aa5.58□□□□□ -1.52
SS18-213ENST00000579640 KRTAP9-2Q9BYQ4 174 aa5.58□□□□□ -1.52
SS18-213ENST00000579640 KRTAP4-1Q9BYQ7 146 aa5.56□□□□□ -1.52
SS18-213ENST00000579640 CYP4F30PQ9H0H9 118 aa5.56□□□□□ -1.52
SS18-213ENST00000579640 KRTAP9-6A0A140TA67 174 aa5.55□□□□□ -1.52
SS18-213ENST00000579640 UBR4Q5T4S7 5183 aa5.55□□□□□ -1.52
SS18-213ENST00000579640 A0A0U1RQV1 116 aa5.54□□□□□ -1.52
SS18-213ENST00000579640 LORP23490 312 aaPredicted RBP5.53□□□□□ -1.52
SS18-213ENST00000579640 C20orf197Q8N268 126 aa5.53□□□□□ -1.52
SS18-213ENST00000579640 HRES1P13985 223 aa5.52□□□□□ -1.53
SS18-213ENST00000579640 KLKP1Q107X0 134 aa5.51□□□□□ -1.53
SS18-213ENST00000579640 RNF213Q63HN8 5207 aa5.5□□□□□ -1.53
SS18-213ENST00000579640 SNURFQ9Y675 71 aa5.5□□□□□ -1.53
SS18-213ENST00000579640 RBM12B-AS1Q9P1G2 102 aa5.49□□□□□ -1.53
SS18-213ENST00000579640 MPLKIPQ8TAP9 179 aa5.48□□□□□ -1.53
SS18-213ENST00000579640 CCDC179H3BU77 68 aa5.45□□□□□ -1.54
SS18-213ENST00000579640 NDUFC1O43677 76 aa5.45□□□□□ -1.54
SS18-213ENST00000579640 PCP4P48539 62 aa5.44□□□□□ -1.54
SS18-213ENST00000579640 C4orf26Q17RF5 130 aa5.44□□□□□ -1.54
SS18-213ENST00000579640 COX6B2Q6YFQ2 88 aa5.44□□□□□ -1.54
SS18-213ENST00000579640 FAM236DA0A1B0GTK5 79 aa5.43□□□□□ -1.54
SS18-213ENST00000579640 FAM236CP0DP71 79 aa5.43□□□□□ -1.54
SS18-213ENST00000579640 MUC2Q02817 5179 aa5.43□□□□□ -1.54
SS18-213ENST00000579640 LCE3BQ5TA77 95 aa5.42□□□□□ -1.54
SS18-213ENST00000579640 SPANXA2-OT1Q8N9U9 137 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms