RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FAM236AA0A1B0GUQ0 79 aa5.98□□□□□ -1.45
SS18-210ENST00000578700 FAM236BA0A1B0GV22 79 aa5.98□□□□□ -1.45
SS18-210ENST00000578700 CD164Q04900 197 aa5.97□□□□□ -1.45
SS18-210ENST00000578700 A0A0U1RQV1 116 aa5.96□□□□□ -1.46
SS18-210ENST00000578700 J3KT08 172 aa5.96□□□□□ -1.46
SS18-210ENST00000578700 HRCT1Q6UXD1 115 aa5.96□□□□□ -1.46
SS18-210ENST00000578700 ANAPC13Q9BS18 74 aa5.96□□□□□ -1.46
SS18-210ENST00000578700 A0A087WVE0 104 aa5.94□□□□□ -1.46
SS18-210ENST00000578700 ATOX1O00244 68 aa5.94□□□□□ -1.46
SS18-210ENST00000578700 KRTAP9-6A0A140TA67 174 aa5.93□□□□□ -1.46
SS18-210ENST00000578700 KRTAP4-8Q9BYQ9 185 aa5.93□□□□□ -1.46
SS18-210ENST00000578700 NDUFB1O75438 58 aa5.92□□□□□ -1.46
SS18-210ENST00000578700 TYMSOSQ8TAI1 123 aa5.92□□□□□ -1.46
SS18-210ENST00000578700 A0A087X002 238 aa5.91□□□□□ -1.46
SS18-210ENST00000578700 KRTAP1-4P0C5Y4 121 aa5.91□□□□□ -1.46
SS18-210ENST00000578700 SMIM20Q8N5G0 67 aa5.91□□□□□ -1.46
SS18-210ENST00000578700 LIMD2Q9BT23 127 aa5.91□□□□□ -1.46
SS18-210ENST00000578700 IGKV4-1P06312 121 aa5.9□□□□□ -1.46
SS18-210ENST00000578700 DEFB116Q30KQ4 102 aa5.9□□□□□ -1.46
SS18-210ENST00000578700 Q8N9L7 120 aa5.9□□□□□ -1.46
SS18-210ENST00000578700 LINC00472Q9H8W2 130 aa5.9□□□□□ -1.46
SS18-210ENST00000578700 DSCR10P59022 87 aa5.89□□□□□ -1.47
SS18-210ENST00000578700 KRTAP13-2Q52LG2 175 aa5.89□□□□□ -1.47
SS18-210ENST00000578700 A8MWP4 228 aa5.88□□□□□ -1.47
SS18-210ENST00000578700 K7EQZ3 153 aa5.88□□□□□ -1.47
SS18-210ENST00000578700 SPAG11AQ6PDA7 123 aa5.87□□□□□ -1.47
SS18-210ENST00000578700 SPINK1P00995 79 aa5.86□□□□□ -1.47
SS18-210ENST00000578700 HCG22E2RYF7 251 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 ASB16-AS1Q495Z4 193 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 Q5XG85 94 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 PRR15Q8IV56 129 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 SERP2Q8N6R1 65 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 LINC00304Q8N9R0 145 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 MUC17Q685J3 4493 aa5.85□□□□□ -1.47
SS18-210ENST00000578700 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.83□□□□□ -1.48
SS18-210ENST00000578700 TRAV7A0A075B6U4 112 aa5.82□□□□□ -1.48
SS18-210ENST00000578700 RPS29P62273 56 aaKnown RBP5.82□□□□□ -1.48
SS18-210ENST00000578700 Q96NJ1 140 aa5.82□□□□□ -1.48
SS18-210ENST00000578700 A0A1B0GVX0 72 aa5.81□□□□□ -1.48
SS18-210ENST00000578700 UQCRQO14949 82 aa5.81□□□□□ -1.48
SS18-210ENST00000578700 COX7CP15954 63 aa5.81□□□□□ -1.48
SS18-210ENST00000578700 CASC2Q6XLA1 102 aa5.81□□□□□ -1.48
SS18-210ENST00000578700 IGHV6-1A0A0B4J1U7 121 aa5.8□□□□□ -1.48
SS18-210ENST00000578700 WFDC13Q8IUB5 93 aa5.8□□□□□ -1.48
SS18-210ENST00000578700 hDV103S1A0JD37 113 aa5.77□□□□□ -1.49
SS18-210ENST00000578700 C8orf87E5RJ46 101 aa5.77□□□□□ -1.49
SS18-210ENST00000578700 C1orf195Q5TG92 126 aa5.77□□□□□ -1.49
SS18-210ENST00000578700 RETNLBQ9BQ08 111 aa5.77□□□□□ -1.49
SS18-210ENST00000578700 C8orf17Q9NRJ1 99 aa5.77□□□□□ -1.49
SS18-210ENST00000578700 MMP24-AS1A0A0U1RRL7 71 aa5.75□□□□□ -1.49
SS18-210ENST00000578700 CCDC179H3BU77 68 aa5.75□□□□□ -1.49
SS18-210ENST00000578700 OCR1Q9BZK8 76 aa5.74□□□□□ -1.49
SS18-210ENST00000578700 LINC00313P59037 77 aa5.73□□□□□ -1.49
SS18-210ENST00000578700 TMEM254Q8TBM7 123 aa5.73□□□□□ -1.49
SS18-210ENST00000578700 TP53AIP1Q9HCN2 124 aa5.73□□□□□ -1.49
SS18-210ENST00000578700 NDUFS5O43920 106 aa5.72□□□□□ -1.49
SS18-210ENST00000578700 C5orf47Q569G3 176 aa5.72□□□□□ -1.49
SS18-210ENST00000578700 MP68P56378 58 aa5.71□□□□□ -1.5
SS18-210ENST00000578700 C20orf197Q8N268 126 aa5.71□□□□□ -1.5
SS18-210ENST00000578700 MRPL34Q9BQ48 92 aaKnown RBP5.71□□□□□ -1.5
SS18-210ENST00000578700 IGLV7-46A0A075B6I9 117 aa5.7□□□□□ -1.5
SS18-210ENST00000578700 FSIP2Q5CZC0 6907 aa5.7□□□□□ -1.5
SS18-210ENST00000578700 KRTAP4-12Q9BQ66 201 aa5.68□□□□□ -1.5
SS18-210ENST00000578700 NDUFC1O43677 76 aa5.67□□□□□ -1.5
SS18-210ENST00000578700 LCE3BQ5TA77 95 aa5.67□□□□□ -1.5
SS18-210ENST00000578700 H3BPC8 53 aa5.66□□□□□ -1.5
SS18-210ENST00000578700 KLKP1Q107X0 134 aa5.66□□□□□ -1.5
SS18-210ENST00000578700 TPRXLQ17RH7 258 aa5.66□□□□□ -1.5
SS18-210ENST00000578700 TRAV22A0A0B4J277 110 aa5.65□□□□□ -1.5
SS18-210ENST00000578700 H0Y9P7 68 aa5.65□□□□□ -1.5
SS18-210ENST00000578700 CRCT1Q9UGL9 99 aa5.65□□□□□ -1.5
SS18-210ENST00000578700 NOTCH2NLQ7Z3S9 236 aa5.64□□□□□ -1.51
SS18-210ENST00000578700 SNURFQ9Y675 71 aa5.64□□□□□ -1.51
SS18-210ENST00000578700 TMEM258P61165 79 aa5.61□□□□□ -1.51
SS18-210ENST00000578700 FP248Q71RG6 208 aaPredicted RBP5.61□□□□□ -1.51
SS18-210ENST00000578700 LINC00208Q96KT6 92 aa5.61□□□□□ -1.51
SS18-210ENST00000578700 Q8N9P0 234 aaPredicted RBP5.6□□□□□ -1.51
SS18-210ENST00000578700 KRTAP19-1Q8IUB9 90 aa5.59□□□□□ -1.51
SS18-210ENST00000578700 C1orf64Q8NEQ6 169 aa5.59□□□□□ -1.51
SS18-210ENST00000578700 LOC101927531A0A1B0GV80 90 aa5.57□□□□□ -1.52
SS18-210ENST00000578700 KRTAP16-1A8MUX0 517 aa5.57□□□□□ -1.52
SS18-210ENST00000578700 KRTAP4-1Q9BYQ7 146 aa5.57□□□□□ -1.52
SS18-210ENST00000578700 C9orf92A6NGG3 77 aa5.56□□□□□ -1.52
SS18-210ENST00000578700 H7BZZ5 65 aa5.56□□□□□ -1.52
SS18-210ENST00000578700 ATP5EP56381 51 aaPredicted RBP5.56□□□□□ -1.52
SS18-210ENST00000578700 ZCCHC13Q8WW36 166 aaKnown RBP5.55□□□□□ -1.52
SS18-210ENST00000578700 KRTAP9-9Q9BYP9 154 aa5.55□□□□□ -1.52
SS18-210ENST00000578700 KRTAP9-4Q9BYQ2 154 aa5.55□□□□□ -1.52
SS18-210ENST00000578700 FAM236DA0A1B0GTK5 79 aa5.54□□□□□ -1.52
SS18-210ENST00000578700 FAM236CP0DP71 79 aa5.54□□□□□ -1.52
SS18-210ENST00000578700 SEC61BP60468 96 aaKnown RBP5.54□□□□□ -1.52
SS18-210ENST00000578700 CYSTM1Q9H1C7 97 aa5.54□□□□□ -1.52
SS18-210ENST00000578700 KRTAP13-3Q3SY46 172 aa5.53□□□□□ -1.52
SS18-210ENST00000578700 A8MUU9 505 aa5.5□□□□□ -1.53
SS18-210ENST00000578700 Q5W150 140 aa5.5□□□□□ -1.53
SS18-210ENST00000578700 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
SS18-210ENST00000578700 SPANXA2-OT1Q8N9U9 137 aa5.48□□□□□ -1.53
SS18-210ENST00000578700 PCOTHQ58A44 107 aa5.47□□□□□ -1.53
SS18-210ENST00000578700 KRTAP4-8A0A0G2JLE6 195 aa5.46□□□□□ -1.54
SS18-210ENST00000578700 IGKV2-30P06310 120 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms