RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 DSCR10P59022 87 aa10.62□□□□□ -0.71
VPS53-216ENST00000574029 SSPOA2VEC9 5147 aa10.61□□□□□ -0.71
VPS53-216ENST00000574029 MT2AP02795 61 aa10.6□□□□□ -0.71
VPS53-216ENST00000574029 KRTAP16-1A8MUX0 517 aa10.59□□□□□ -0.71
VPS53-216ENST00000574029 LOC110117498A0A087WWA1 95 aa10.58□□□□□ -0.72
VPS53-216ENST00000574029 C21orf62-AS1Q17RA5 79 aa10.58□□□□□ -0.72
VPS53-216ENST00000574029 LINC00472Q9H8W2 130 aa10.58□□□□□ -0.72
VPS53-216ENST00000574029 COL5A1-AS1Q5SY13 56 aa10.57□□□□□ -0.72
VPS53-216ENST00000574029 VPS25Q9BRG1 176 aa10.57□□□□□ -0.72
VPS53-216ENST00000574029 PDE6GP18545 87 aa10.56□□□□□ -0.72
VPS53-216ENST00000574029 Q6ZQT0 140 aa10.56□□□□□ -0.72
VPS53-216ENST00000574029 A0A1B0GW54 56 aa10.54□□□□□ -0.72
VPS53-216ENST00000574029 H3BT86 120 aa10.54□□□□□ -0.72
VPS53-216ENST00000574029 FAM236DA0A1B0GTK5 79 aa10.53□□□□□ -0.72
VPS53-216ENST00000574029 IGKV4-1P06312 121 aa10.53□□□□□ -0.72
VPS53-216ENST00000574029 FAM236CP0DP71 79 aa10.53□□□□□ -0.72
VPS53-216ENST00000574029 LINC00313P59037 77 aa10.53□□□□□ -0.72
VPS53-216ENST00000574029 SIGMAR1Q99720 223 aa10.53□□□□□ -0.72
VPS53-216ENST00000574029 MT1FP04733 61 aa10.52□□□□□ -0.73
VPS53-216ENST00000574029 MPLKIPQ8TAP9 179 aa10.52□□□□□ -0.73
VPS53-216ENST00000574029 LCE2BO14633 110 aa10.5□□□□□ -0.73
VPS53-216ENST00000574029 C14orf132Q9NPU4 83 aa10.5□□□□□ -0.73
VPS53-216ENST00000574029 SPCS1Q9Y6A9 102 aa10.5□□□□□ -0.73
VPS53-216ENST00000574029 HRES1P13985 223 aa10.49□□□□□ -0.73
VPS53-216ENST00000574029 DEFB116Q30KQ4 102 aa10.48□□□□□ -0.73
VPS53-216ENST00000574029 KRTAP19-1Q8IUB9 90 aa10.48□□□□□ -0.73
VPS53-216ENST00000574029 KRTAP9-3Q9BYQ3 159 aa10.48□□□□□ -0.73
VPS53-216ENST00000574029 KRTAP3-3Q9BYR6 98 aa10.48□□□□□ -0.73
VPS53-216ENST00000574029 KRTAP3-2Q9BYR7 98 aa10.48□□□□□ -0.73
VPS53-216ENST00000574029 RBM12B-AS1Q9P1G2 102 aa10.47□□□□□ -0.73
VPS53-216ENST00000574029 NOTCH2NLQ7Z3S9 236 aa10.45□□□□□ -0.74
VPS53-216ENST00000574029 MTURNQ8N3F0 131 aa10.45□□□□□ -0.74
VPS53-216ENST00000574029 PCP4L1A6NKN8 68 aa10.44□□□□□ -0.74
VPS53-216ENST00000574029 J3KT08 172 aa10.44□□□□□ -0.74
VPS53-216ENST00000574029 FCGBPQ9Y6R7 5405 aaPredicted RBP10.44□□□□□ -0.74
VPS53-216ENST00000574029 KRTAP10-10P60014 251 aa10.42□□□□□ -0.74
VPS53-216ENST00000574029 K7EP34 96 aa10.39□□□□□ -0.75
VPS53-216ENST00000574029 SMCPP49901 116 aaPredicted RBP10.39□□□□□ -0.75
VPS53-216ENST00000574029 A0A1B0GVX0 72 aa10.38□□□□□ -0.75
VPS53-216ENST00000574029 IGHV6-1A0A0B4J1U7 121 aa10.37□□□□□ -0.75
VPS53-216ENST00000574029 PRO0461Q9UI25 63 aa10.37□□□□□ -0.75
VPS53-216ENST00000574029 C8orf87E5RJ46 101 aa10.36□□□□□ -0.75
VPS53-216ENST00000574029 NREPQ16612 68 aa10.34□□□□□ -0.75
VPS53-216ENST00000574029 SYNE2Q8WXH0 6885 aaKnown RBP10.31□□□□□ -0.76
VPS53-216ENST00000574029 NDUFB1O75438 58 aa10.31□□□□□ -0.76
VPS53-216ENST00000574029 GTF2H5Q6ZYL4 71 aa10.31□□□□□ -0.76
VPS53-216ENST00000574029 A8MWP4 228 aa10.3□□□□□ -0.76
VPS53-216ENST00000574029 IGKV3D-7A0A0C4DH55 119 aa10.26□□□□□ -0.77
VPS53-216ENST00000574029 MACF1Q9UPN3 7388 aaKnown RBP10.25□□□□□ -0.77
VPS53-216ENST00000574029 F8W1H4 67 aa10.24□□□□□ -0.77
VPS53-216ENST00000574029 PRR15Q8IV56 129 aa10.23□□□□□ -0.77
VPS53-216ENST00000574029 ZCCHC13Q8WW36 166 aaKnown RBP10.23□□□□□ -0.77
VPS53-216ENST00000574029 C8orf17Q9NRJ1 99 aa10.22□□□□□ -0.77
VPS53-216ENST00000574029 SPINK7P58062 85 aa10.21□□□□□ -0.77
VPS53-216ENST00000574029 KRTAP19-6Q3LI70 58 aa10.21□□□□□ -0.77
VPS53-216ENST00000574029 LINC00846Q9NV44 126 aa10.21□□□□□ -0.77
VPS53-216ENST00000574029 Q8N9P0 234 aaPredicted RBP10.19□□□□□ -0.78
VPS53-216ENST00000574029 Q6ZVQ6 151 aa10.18□□□□□ -0.78
VPS53-216ENST00000574029 BPY2O14599 106 aa10.16□□□□□ -0.78
VPS53-216ENST00000574029 MMP24-AS1A0A0U1RRL7 71 aa10.12□□□□□ -0.79
VPS53-216ENST00000574029 K7EQZ3 153 aa10.12□□□□□ -0.79
VPS53-216ENST00000574029 ETDBQ3ZM63 59 aa10.12□□□□□ -0.79
VPS53-216ENST00000574029 TMEM254Q8TBM7 123 aa10.09□□□□□ -0.79
VPS53-216ENST00000574029 UBL5Q9BZL1 73 aa10.09□□□□□ -0.79
VPS53-216ENST00000574029 WFDC13Q8IUB5 93 aa10.07□□□□□ -0.8
VPS53-216ENST00000574029 MRPL34Q9BQ48 92 aaKnown RBP10.07□□□□□ -0.8
VPS53-216ENST00000574029 hDV103S1A0JD37 113 aa10.06□□□□□ -0.8
VPS53-216ENST00000574029 Q8N9L7 120 aa10.01□□□□□ -0.81
VPS53-216ENST00000574029 CASC2Q6XLA1 102 aa9.95□□□□□ -0.82
VPS53-216ENST00000574029 KRTAP6-3Q3LI67 103 aa9.94□□□□□ -0.82
VPS53-216ENST00000574029 CXCL6P80162 114 aa9.93□□□□□ -0.82
VPS53-216ENST00000574029 NDUFS5O43920 106 aa9.92□□□□□ -0.82
VPS53-216ENST00000574029 ACYP1P07311 99 aa9.92□□□□□ -0.82
VPS53-216ENST00000574029 A0A1B0GV90 55 aa9.9□□□□□ -0.82
VPS53-216ENST00000574029 H1FX-AS1Q4G0G2 97 aa9.89□□□□□ -0.83
VPS53-216ENST00000574029 FAM240AA0A1B0GVK7 77 aa9.88□□□□□ -0.83
VPS53-216ENST00000574029 HCG22E2RYF7 251 aa9.88□□□□□ -0.83
VPS53-216ENST00000574029 Q5W150 140 aa9.85□□□□□ -0.83
VPS53-216ENST00000574029 NEBP20929 6669 aa9.77□□□□□ -0.85
VPS53-216ENST00000574029 ATP5EP2Q5VTU8 51 aa9.75□□□□□ -0.85
VPS53-216ENST00000574029 C7orf65Q6ZTY9 151 aa9.74□□□□□ -0.85
VPS53-216ENST00000574029 TP53AIP1Q9HCN2 124 aa9.73□□□□□ -0.85
VPS53-216ENST00000574029 IGKV2D-30A0A075B6S6 120 aa9.72□□□□□ -0.85
VPS53-216ENST00000574029 IGKV2-30P06310 120 aa9.72□□□□□ -0.85
VPS53-216ENST00000574029 LINC00643Q86TS7 51 aa9.68□□□□□ -0.86
VPS53-216ENST00000574029 HIST1H4AP62805 103 aaKnown RBP9.62□□□□□ -0.87
VPS53-216ENST00000574029 J3QR89 54 aa9.6□□□□□ -0.87
VPS53-216ENST00000574029 C4orf26Q17RF5 130 aa9.58□□□□□ -0.88
VPS53-216ENST00000574029 A6NN06 94 aa9.57□□□□□ -0.88
VPS53-216ENST00000574029 KRTAP20-1Q3LI63 56 aa9.57□□□□□ -0.88
VPS53-216ENST00000574029 MT1BP07438 61 aa9.56□□□□□ -0.88
VPS53-216ENST00000574029 MUC12Q9UKN1 5478 aa9.55□□□□□ -0.88
VPS53-216ENST00000574029 C5orf47Q569G3 176 aa9.53□□□□□ -0.88
VPS53-216ENST00000574029 FAM236AA0A1B0GUQ0 79 aa9.52□□□□□ -0.89
VPS53-216ENST00000574029 FAM236BA0A1B0GV22 79 aa9.52□□□□□ -0.89
VPS53-216ENST00000574029 A0A087WVE0 104 aa9.51□□□□□ -0.89
VPS53-216ENST00000574029 TRAV22A0A0B4J277 110 aa9.51□□□□□ -0.89
VPS53-216ENST00000574029 Q5VV11 94 aa9.5□□□□□ -0.89
VPS53-216ENST00000574029 UQCRQO14949 82 aa9.49□□□□□ -0.89
VPS53-216ENST00000574029 KRTAP19-8Q3LI54 63 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms