RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SPAG11AQ6PDA7 123 aa12.17□□□□□ -0.46
CLN3-209ENST00000561689 NDUFB1O75438 58 aa12.16□□□□□ -0.46
CLN3-209ENST00000561689 C1orf195Q5TG92 126 aa12.16□□□□□ -0.46
CLN3-209ENST00000561689 OCR1Q9BZK8 76 aa12.14□□□□□ -0.47
CLN3-209ENST00000561689 FLG2Q5D862 2391 aaPredicted RBP12.14□□□□□ -0.47
CLN3-209ENST00000561689 SNURFQ9Y675 71 aa12.12□□□□□ -0.47
CLN3-209ENST00000561689 HCG22E2RYF7 251 aa12.12□□□□□ -0.47
CLN3-209ENST00000561689 IGHV6-1A0A0B4J1U7 121 aa12.11□□□□□ -0.47
CLN3-209ENST00000561689 KRTAP10-8P60410 259 aa12.11□□□□□ -0.47
CLN3-209ENST00000561689 A0A1B0GVX0 72 aa12.1□□□□□ -0.47
CLN3-209ENST00000561689 TMEM258P61165 79 aa12.1□□□□□ -0.47
CLN3-209ENST00000561689 RPS29P62273 56 aaKnown RBP12.1□□□□□ -0.47
CLN3-209ENST00000561689 WFDC13Q8IUB5 93 aa12.1□□□□□ -0.47
CLN3-209ENST00000561689 KRTAP4-5Q9BYR2 181 aa12.1□□□□□ -0.47
CLN3-209ENST00000561689 MYCBP2O75592 4640 aa12.09□□□□□ -0.47
CLN3-209ENST00000561689 TNXBP22105 4242 aa12.09□□□□□ -0.47
CLN3-209ENST00000561689 KLKP1Q107X0 134 aa12.09□□□□□ -0.47
CLN3-209ENST00000561689 FAT3Q8TDW7 4589 aa12.08□□□□□ -0.48
CLN3-209ENST00000561689 MMP24-AS1A0A0U1RRL7 71 aa12.05□□□□□ -0.48
CLN3-209ENST00000561689 BIRC6Q9NR09 4857 aa12.05□□□□□ -0.48
CLN3-209ENST00000561689 H7BZZ5 65 aa12.05□□□□□ -0.48
CLN3-209ENST00000561689 CASC2Q6XLA1 102 aa12.04□□□□□ -0.48
CLN3-209ENST00000561689 NOTCH2NLQ7Z3S9 236 aa12.04□□□□□ -0.48
CLN3-209ENST00000561689 C8orf17Q9NRJ1 99 aa12.03□□□□□ -0.48
CLN3-209ENST00000561689 TMEM254Q8TBM7 123 aa12.03□□□□□ -0.48
CLN3-209ENST00000561689 KRTAP29-1A8MX34 341 aaPredicted RBP12.02□□□□□ -0.49
CLN3-209ENST00000561689 hDV103S1A0JD37 113 aa11.99□□□□□ -0.49
CLN3-209ENST00000561689 MT1HL1P0DM35 61 aa11.98□□□□□ -0.49
CLN3-209ENST00000561689 A0A0U1RQV1 116 aa11.97□□□□□ -0.49
CLN3-209ENST00000561689 RETNLBQ9BQ08 111 aa11.96□□□□□ -0.49
CLN3-209ENST00000561689 FAM236DA0A1B0GTK5 79 aa11.92□□□□□ -0.5
CLN3-209ENST00000561689 FAM236CP0DP71 79 aa11.92□□□□□ -0.5
CLN3-209ENST00000561689 HERC2O95714 4834 aa11.91□□□□□ -0.5
CLN3-209ENST00000561689 LINC00313P59037 77 aa11.91□□□□□ -0.5
CLN3-209ENST00000561689 C8orf87E5RJ46 101 aa11.9□□□□□ -0.5
CLN3-209ENST00000561689 DMBT1Q9UGM3 2413 aaPredicted RBP11.9□□□□□ -0.5
CLN3-209ENST00000561689 ABCA13Q86UQ4 5058 aa11.9□□□□□ -0.5
CLN3-209ENST00000561689 OXTP01178 125 aa11.9□□□□□ -0.5
CLN3-209ENST00000561689 RPS28P62857 69 aaKnown RBP11.9□□□□□ -0.5
CLN3-209ENST00000561689 NDUFC1O43677 76 aa11.88□□□□□ -0.51
CLN3-209ENST00000561689 MRPL34Q9BQ48 92 aaKnown RBP11.87□□□□□ -0.51
CLN3-209ENST00000561689 NDUFS5O43920 106 aa11.83□□□□□ -0.52
CLN3-209ENST00000561689 ZCCHC13Q8WW36 166 aaKnown RBP11.81□□□□□ -0.52
CLN3-209ENST00000561689 C5orf47Q569G3 176 aa11.81□□□□□ -0.52
CLN3-209ENST00000561689 KRTAP16-1A8MUX0 517 aa11.79□□□□□ -0.52
CLN3-209ENST00000561689 C9orf92A6NGG3 77 aa11.76□□□□□ -0.53
CLN3-209ENST00000561689 TP53AIP1Q9HCN2 124 aa11.74□□□□□ -0.53
CLN3-209ENST00000561689 SERP1Q9Y6X1 66 aa11.74□□□□□ -0.53
CLN3-209ENST00000561689 Q8N9P0 234 aaPredicted RBP11.72□□□□□ -0.53
CLN3-209ENST00000561689 H0Y9P7 68 aa11.7□□□□□ -0.54
CLN3-209ENST00000561689 ATP5EP56381 51 aaPredicted RBP11.7□□□□□ -0.54
CLN3-209ENST00000561689 MP68P56378 58 aa11.69□□□□□ -0.54
CLN3-209ENST00000561689 FP248Q71RG6 208 aaPredicted RBP11.68□□□□□ -0.54
CLN3-209ENST00000561689 LINC00208Q96KT6 92 aa11.68□□□□□ -0.54
CLN3-209ENST00000561689 TRAV22A0A0B4J277 110 aa11.67□□□□□ -0.54
CLN3-209ENST00000561689 IGLV7-46A0A075B6I9 117 aa11.65□□□□□ -0.54
CLN3-209ENST00000561689 J3QL48 77 aa11.65□□□□□ -0.54
CLN3-209ENST00000561689 Q5W150 140 aa11.65□□□□□ -0.55
CLN3-209ENST00000561689 PRR4Q16378 134 aa11.62□□□□□ -0.55
CLN3-209ENST00000561689 C1orf64Q8NEQ6 169 aa11.58□□□□□ -0.56
CLN3-209ENST00000561689 H3BPC8 53 aa11.58□□□□□ -0.56
CLN3-209ENST00000561689 KRTAP13-3Q3SY46 172 aa11.57□□□□□ -0.56
CLN3-209ENST00000561689 C20orf166-AS1Q96NR2 134 aa11.56□□□□□ -0.56
CLN3-209ENST00000561689 PCLOQ9Y6V0 5065 aa11.54□□□□□ -0.56
CLN3-209ENST00000561689 A8MUU9 505 aa11.54□□□□□ -0.56
CLN3-209ENST00000561689 C4orf26Q17RF5 130 aa11.5□□□□□ -0.57
CLN3-209ENST00000561689 SMIM26A0A096LP01 95 aa11.48□□□□□ -0.57
CLN3-209ENST00000561689 CYP4F30PQ9H0H9 118 aa11.48□□□□□ -0.57
CLN3-209ENST00000561689 Q75L30 129 aa11.46□□□□□ -0.58
CLN3-209ENST00000561689 XP32Q5T750 250 aa11.45□□□□□ -0.58
CLN3-209ENST00000561689 LOC101927531A0A1B0GV80 90 aa11.43□□□□□ -0.58
CLN3-209ENST00000561689 PCOTHQ58A44 107 aa11.43□□□□□ -0.58
CLN3-209ENST00000561689 SPANXA2-OT1Q8N9U9 137 aa11.42□□□□□ -0.58
CLN3-209ENST00000561689 TPRXLQ17RH7 258 aa11.4□□□□□ -0.58
CLN3-209ENST00000561689 IGKV2-30P06310 120 aa11.37□□□□□ -0.59
CLN3-209ENST00000561689 IGKV2D-30A0A075B6S6 120 aa11.37□□□□□ -0.59
CLN3-209ENST00000561689 RPL37P61927 97 aaKnown RBP11.36□□□□□ -0.59
CLN3-209ENST00000561689 LPAP08519 4548 aa11.35□□□□□ -0.59
CLN3-209ENST00000561689 MPLKIPQ8TAP9 179 aa11.34□□□□□ -0.59
CLN3-209ENST00000561689 ATP11AUNQ6ZP68 121 aa11.33□□□□□ -0.6
CLN3-209ENST00000561689 HERC1Q15751 4861 aa11.27□□□□□ -0.61
CLN3-209ENST00000561689 LRP2P98164 4655 aa11.26□□□□□ -0.61
CLN3-209ENST00000561689 C7orf65Q6ZTY9 151 aa11.26□□□□□ -0.61
CLN3-209ENST00000561689 HRES1P13985 223 aa11.23□□□□□ -0.61
CLN3-209ENST00000561689 SPINK7P58062 85 aa11.21□□□□□ -0.61
CLN3-209ENST00000561689 COA5Q86WW8 74 aa11.19□□□□□ -0.62
CLN3-209ENST00000561689 PRO0628Q9UI54 55 aa11.17□□□□□ -0.62
CLN3-209ENST00000561689 Q1T7F1 81 aa11.16□□□□□ -0.62
CLN3-209ENST00000561689 HMCN2Q8NDA2 5059 aa11.08□□□□□ -0.64
CLN3-209ENST00000561689 PSPHP1O15172 72 aa11.05□□□□□ -0.64
CLN3-209ENST00000561689 SEC61BP60468 96 aaKnown RBP11.01□□□□□ -0.65
CLN3-209ENST00000561689 DMAC1Q96GE9 116 aa11.01□□□□□ -0.65
CLN3-209ENST00000561689 A8MUN3 132 aa10.99□□□□□ -0.65
CLN3-209ENST00000561689 V9GYY9 64 aa10.97□□□□□ -0.65
CLN3-209ENST00000561689 ACYP2P14621 99 aa10.95□□□□□ -0.66
CLN3-209ENST00000561689 Q5VV11 94 aa10.92□□□□□ -0.66
CLN3-209ENST00000561689 KRTAP3-1Q9BYR8 98 aa10.92□□□□□ -0.66
CLN3-209ENST00000561689 BRK1Q8WUW1 75 aa10.92□□□□□ -0.66
CLN3-209ENST00000561689 PRR15LQ9BU68 103 aa10.9□□□□□ -0.66
CLN3-209ENST00000561689 COX6B2Q6YFQ2 88 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms