RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 A0A1W2PNM2 257 aa5.29□□□□□ -1.56
USP3-207ENST00000558218 UBE2V1Q13404 147 aa5.29□□□□□ -1.56
USP3-207ENST00000558218 COX6B2Q6YFQ2 88 aa5.29□□□□□ -1.56
USP3-207ENST00000558218 A8MUU9 505 aa5.28□□□□□ -1.56
USP3-207ENST00000558218 TRACP01848 142 aa5.27□□□□□ -1.57
USP3-207ENST00000558218 K7ERJ3 54 aa5.25□□□□□ -1.57
USP3-207ENST00000558218 M0R2T5 61 aa5.25□□□□□ -1.57
USP3-207ENST00000558218 LINC00313P59037 77 aa5.25□□□□□ -1.57
USP3-207ENST00000558218 KRTAP10-6P60371 365 aaPredicted RBP5.25□□□□□ -1.57
USP3-207ENST00000558218 SCGB1C2P0DMR2 95 aa5.24□□□□□ -1.57
USP3-207ENST00000558218 LINC00472Q9H8W2 130 aa5.24□□□□□ -1.57
USP3-207ENST00000558218 CCKP06307 115 aa5.23□□□□□ -1.57
USP3-207ENST00000558218 IGKV4-1P06312 121 aa5.23□□□□□ -1.57
USP3-207ENST00000558218 IGKV2-30P06310 120 aa5.22□□□□□ -1.57
USP3-207ENST00000558218 RBM3P98179 157 aaKnown RBP5.22□□□□□ -1.57
USP3-207ENST00000558218 TRBV20-1A0A075B6N2 111 aa5.21□□□□□ -1.58
USP3-207ENST00000558218 DSCR10P59022 87 aa5.21□□□□□ -1.58
USP3-207ENST00000558218 Q8N9P0 234 aaPredicted RBP5.21□□□□□ -1.58
USP3-207ENST00000558218 DSCR8Q96T75 97 aa5.21□□□□□ -1.58
USP3-207ENST00000558218 SIGMAR1Q99720 223 aa5.21□□□□□ -1.58
USP3-207ENST00000558218 A0A1B0GW54 56 aa5.19□□□□□ -1.58
USP3-207ENST00000558218 KRTAP16-1A8MUX0 517 aa5.19□□□□□ -1.58
USP3-207ENST00000558218 BAALC-AS2P0C853 105 aa5.19□□□□□ -1.58
USP3-207ENST00000558218 C9JAW5 83 aa5.18□□□□□ -1.58
USP3-207ENST00000558218 M0R143 59 aa5.18□□□□□ -1.58
USP3-207ENST00000558218 A0A1B0GV72 72 aa5.17□□□□□ -1.58
USP3-207ENST00000558218 C8orf87E5RJ46 101 aa5.17□□□□□ -1.58
USP3-207ENST00000558218 J3KT08 172 aa5.17□□□□□ -1.58
USP3-207ENST00000558218 JMJD7-PLA2G4BH0Y9G9 81 aa5.16□□□□□ -1.58
USP3-207ENST00000558218 IGHV6-1A0A0B4J1U7 121 aa5.15□□□□□ -1.59
USP3-207ENST00000558218 PDE6GP18545 87 aa5.15□□□□□ -1.59
USP3-207ENST00000558218 ATXN8Q156A1 80 aa5.15□□□□□ -1.59
USP3-207ENST00000558218 DEFB116Q30KQ4 102 aa5.15□□□□□ -1.59
USP3-207ENST00000558218 A0A1B0GVX0 72 aa5.14□□□□□ -1.59
USP3-207ENST00000558218 LCE1AQ5T7P2 110 aa5.14□□□□□ -1.59
USP3-207ENST00000558218 Q6ZQT0 140 aa5.14□□□□□ -1.59
USP3-207ENST00000558218 NOTCH2NLQ7Z3S9 236 aa5.14□□□□□ -1.59
USP3-207ENST00000558218 VPS25Q9BRG1 176 aa5.14□□□□□ -1.59
USP3-207ENST00000558218 FLGP20930 4061 aaPredicted RBP5.13□□□□□ -1.59
USP3-207ENST00000558218 LOC110117498A0A087WWA1 95 aa5.12□□□□□ -1.59
USP3-207ENST00000558218 NDUFB1O75438 58 aa5.12□□□□□ -1.59
USP3-207ENST00000558218 RBM12B-AS1Q9P1G2 102 aa5.12□□□□□ -1.59
USP3-207ENST00000558218 SMIM6P0DI80 62 aa5.11□□□□□ -1.59
USP3-207ENST00000558218 LYRM7Q5U5X0 104 aa5.11□□□□□ -1.59
USP3-207ENST00000558218 MPLKIPQ8TAP9 179 aa5.1□□□□□ -1.59
USP3-207ENST00000558218 HRES1P13985 223 aa5.08□□□□□ -1.6
USP3-207ENST00000558218 MTURNQ8N3F0 131 aa5.08□□□□□ -1.6
USP3-207ENST00000558218 FAM236DA0A1B0GTK5 79 aa5.07□□□□□ -1.6
USP3-207ENST00000558218 A8MWP4 228 aa5.07□□□□□ -1.6
USP3-207ENST00000558218 TSTD3H0UI37 97 aa5.07□□□□□ -1.6
USP3-207ENST00000558218 FAM236CP0DP71 79 aa5.07□□□□□ -1.6
USP3-207ENST00000558218 ZCCHC13Q8WW36 166 aaKnown RBP5.07□□□□□ -1.6
USP3-207ENST00000558218 NAA38Q9BRA0 125 aaKnown RBP5.05□□□□□ -1.6
USP3-207ENST00000558218 C8orf17Q9NRJ1 99 aa5.04□□□□□ -1.6
USP3-207ENST00000558218 SPINK7P58062 85 aa5.03□□□□□ -1.6
USP3-207ENST00000558218 NREPQ16612 68 aa5.03□□□□□ -1.6
USP3-207ENST00000558218 C14orf132Q9NPU4 83 aa5.03□□□□□ -1.6
USP3-207ENST00000558218 IGKV3D-7A0A0C4DH55 119 aa5.02□□□□□ -1.61
USP3-207ENST00000558218 PRR15Q8IV56 129 aa5.02□□□□□ -1.61
USP3-207ENST00000558218 H3BT86 120 aa5.01□□□□□ -1.61
USP3-207ENST00000558218 Q6ZVQ6 151 aa5.01□□□□□ -1.61
USP3-207ENST00000558218 BATFQ16520 125 aa4.99□□□□□ -1.61
USP3-207ENST00000558218 A0A1W2PPM0 123 aa4.98□□□□□ -1.61
USP3-207ENST00000558218 TMEM254Q8TBM7 123 aa4.98□□□□□ -1.61
USP3-207ENST00000558218 IGKV2D-30A0A075B6S6 120 aa4.97□□□□□ -1.61
USP3-207ENST00000558218 MT2AP02795 61 aa4.97□□□□□ -1.61
USP3-207ENST00000558218 MRPL34Q9BQ48 92 aaKnown RBP4.97□□□□□ -1.61
USP3-207ENST00000558218 TAX1BP3O14907 124 aa4.96□□□□□ -1.62
USP3-207ENST00000558218 LOC105371267A0A1B0GV96 52 aa4.95□□□□□ -1.62
USP3-207ENST00000558218 MMP24-AS1A0A0U1RRL7 71 aa4.94□□□□□ -1.62
USP3-207ENST00000558218 hDV103S1A0JD37 113 aa4.94□□□□□ -1.62
USP3-207ENST00000558218 WFDC13Q8IUB5 93 aa4.94□□□□□ -1.62
USP3-207ENST00000558218 BPY2O14599 106 aa4.93□□□□□ -1.62
USP3-207ENST00000558218 K7EQZ3 153 aa4.92□□□□□ -1.62
USP3-207ENST00000558218 KRTAP10-10P60014 251 aa4.92□□□□□ -1.62
USP3-207ENST00000558218 MT1FP04733 61 aa4.91□□□□□ -1.62
USP3-207ENST00000558218 NDUFS5O43920 106 aa4.89□□□□□ -1.63
USP3-207ENST00000558218 SPCS1Q9Y6A9 102 aa4.89□□□□□ -1.63
USP3-207ENST00000558218 H1FX-AS1Q4G0G2 97 aa4.88□□□□□ -1.63
USP3-207ENST00000558218 COL5A1-AS1Q5SY13 56 aa4.86□□□□□ -1.63
USP3-207ENST00000558218 CASC2Q6XLA1 102 aa4.86□□□□□ -1.63
USP3-207ENST00000558218 C7orf65Q6ZTY9 151 aa4.85□□□□□ -1.63
USP3-207ENST00000558218 CXCL6P80162 114 aa4.84□□□□□ -1.63
USP3-207ENST00000558218 Q5W150 140 aa4.84□□□□□ -1.63
USP3-207ENST00000558218 UBL5Q9BZL1 73 aa4.84□□□□□ -1.63
USP3-207ENST00000558218 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.83□□□□□ -1.64
USP3-207ENST00000558218 PRO0461Q9UI25 63 aa4.83□□□□□ -1.64
USP3-207ENST00000558218 SYNE2Q8WXH0 6885 aaKnown RBP4.82□□□□□ -1.64
USP3-207ENST00000558218 KRTAP2-2Q9BYT5 123 aa4.82□□□□□ -1.64
USP3-207ENST00000558218 LINC00846Q9NV44 126 aa4.82□□□□□ -1.64
USP3-207ENST00000558218 MACF1Q9UPN3 7388 aaKnown RBP4.81□□□□□ -1.64
USP3-207ENST00000558218 HCG22E2RYF7 251 aa4.81□□□□□ -1.64
USP3-207ENST00000558218 K7EP34 96 aa4.81□□□□□ -1.64
USP3-207ENST00000558218 Q8N9L7 120 aa4.81□□□□□ -1.64
USP3-207ENST00000558218 USH2AO75445 5202 aa4.81□□□□□ -1.64
USP3-207ENST00000558218 SSPOA2VEC9 5147 aa4.8□□□□□ -1.64
USP3-207ENST00000558218 F8W1H4 67 aa4.78□□□□□ -1.64
USP3-207ENST00000558218 GTF2H5Q6ZYL4 71 aa4.78□□□□□ -1.64
USP3-207ENST00000558218 TP53AIP1Q9HCN2 124 aa4.77□□□□□ -1.65
USP3-207ENST00000558218 C4orf26Q17RF5 130 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms