RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 PRR15Q8IV56 129 aa10.41□□□□□ -0.74
SHOX-204ENST00000554971 IGLV7-43P04211 117 aa10.4□□□□□ -0.74
SHOX-204ENST00000554971 ZCCHC13Q8WW36 166 aaKnown RBP10.39□□□□□ -0.75
SHOX-204ENST00000554971 SMIM26A0A096LP01 95 aa10.39□□□□□ -0.75
SHOX-204ENST00000554971 KRTAP29-1A8MX34 341 aaPredicted RBP10.39□□□□□ -0.75
SHOX-204ENST00000554971 DMBT1Q9UGM3 2413 aaPredicted RBP10.37□□□□□ -0.75
SHOX-204ENST00000554971 DEFB116Q30KQ4 102 aa10.36□□□□□ -0.75
SHOX-204ENST00000554971 Q5XG85 94 aa10.36□□□□□ -0.75
SHOX-204ENST00000554971 H3BPC8 53 aa10.35□□□□□ -0.75
SHOX-204ENST00000554971 NDUFB1O75438 58 aa10.35□□□□□ -0.75
SHOX-204ENST00000554971 MP68P56378 58 aa10.34□□□□□ -0.75
SHOX-204ENST00000554971 CASC2Q6XLA1 102 aa10.33□□□□□ -0.76
SHOX-204ENST00000554971 ZNF861PO60384 105 aa10.33□□□□□ -0.76
SHOX-204ENST00000554971 SPINK6Q6UWN8 80 aa10.33□□□□□ -0.76
SHOX-204ENST00000554971 HERC1Q15751 4861 aa10.32□□□□□ -0.76
SHOX-204ENST00000554971 WFDC13Q8IUB5 93 aa10.32□□□□□ -0.76
SHOX-204ENST00000554971 IGLV9-49A0A0B4J1Y8 123 aa10.27□□□□□ -0.76
SHOX-204ENST00000554971 C4orf26Q17RF5 130 aa10.25□□□□□ -0.77
SHOX-204ENST00000554971 hDV103S1A0JD37 113 aa10.25□□□□□ -0.77
SHOX-204ENST00000554971 CYP4F30PQ9H0H9 118 aa10.25□□□□□ -0.77
SHOX-204ENST00000554971 KRTAP1-4P0C5Y4 121 aa10.24□□□□□ -0.77
SHOX-204ENST00000554971 Q96NJ1 140 aa10.23□□□□□ -0.77
SHOX-204ENST00000554971 MMP24-AS1A0A0U1RRL7 71 aa10.23□□□□□ -0.77
SHOX-204ENST00000554971 MOBPQ13875 183 aa10.23□□□□□ -0.77
SHOX-204ENST00000554971 ASB16-AS1Q495Z4 193 aa10.22□□□□□ -0.77
SHOX-204ENST00000554971 FP248Q71RG6 208 aaPredicted RBP10.22□□□□□ -0.77
SHOX-204ENST00000554971 TRAV22A0A0B4J277 110 aa10.21□□□□□ -0.77
SHOX-204ENST00000554971 TP53AIP1Q9HCN2 124 aa10.21□□□□□ -0.77
SHOX-204ENST00000554971 H0Y9P7 68 aa10.19□□□□□ -0.78
SHOX-204ENST00000554971 SPANXA2-OT1Q8N9U9 137 aa10.19□□□□□ -0.78
SHOX-204ENST00000554971 HRCT1Q6UXD1 115 aa10.18□□□□□ -0.78
SHOX-204ENST00000554971 LINC00208Q96KT6 92 aa10.18□□□□□ -0.78
SHOX-204ENST00000554971 MT1HL1P0DM35 61 aa10.17□□□□□ -0.78
SHOX-204ENST00000554971 CD164Q04900 197 aa10.17□□□□□ -0.78
SHOX-204ENST00000554971 ANAPC11Q9NYG5 84 aa10.16□□□□□ -0.78
SHOX-204ENST00000554971 A0A1B0GVX0 72 aa10.15□□□□□ -0.79
SHOX-204ENST00000554971 C8orf17Q9NRJ1 99 aa10.15□□□□□ -0.79
SHOX-204ENST00000554971 A0A087X002 238 aa10.13□□□□□ -0.79
SHOX-204ENST00000554971 SSBP3-AS1Q7Z2R9 100 aa10.13□□□□□ -0.79
SHOX-204ENST00000554971 C1orf64Q8NEQ6 169 aa10.13□□□□□ -0.79
SHOX-204ENST00000554971 PRR26Q8N8Z3 221 aa10.12□□□□□ -0.79
SHOX-204ENST00000554971 KRTAP10-8P60410 259 aa10.11□□□□□ -0.79
SHOX-204ENST00000554971 FAM229BQ4G0N7 80 aa10.09□□□□□ -0.79
SHOX-204ENST00000554971 KRTAP13-2Q52LG2 175 aa10.07□□□□□ -0.8
SHOX-204ENST00000554971 J3QL48 77 aa10.07□□□□□ -0.8
SHOX-204ENST00000554971 IGHV6-1A0A0B4J1U7 121 aa10.05□□□□□ -0.8
SHOX-204ENST00000554971 MRPL34Q9BQ48 92 aaKnown RBP10.05□□□□□ -0.8
SHOX-204ENST00000554971 Q1T7F1 81 aa10.05□□□□□ -0.8
SHOX-204ENST00000554971 IGLV7-46A0A075B6I9 117 aa10.01□□□□□ -0.81
SHOX-204ENST00000554971 MPLKIPQ8TAP9 179 aa10.01□□□□□ -0.81
SHOX-204ENST00000554971 V9GYY9 64 aa10.01□□□□□ -0.81
SHOX-204ENST00000554971 C8orf87E5RJ46 101 aa9.99□□□□□ -0.81
SHOX-204ENST00000554971 HMCN2Q8NDA2 5059 aa9.99□□□□□ -0.81
SHOX-204ENST00000554971 PRR4Q16378 134 aa9.97□□□□□ -0.81
SHOX-204ENST00000554971 PRO0628Q9UI54 55 aa9.97□□□□□ -0.81
SHOX-204ENST00000554971 TYMSOSQ8TAI1 123 aa9.97□□□□□ -0.81
SHOX-204ENST00000554971 NDUFS5O43920 106 aa9.96□□□□□ -0.81
SHOX-204ENST00000554971 C1orf195Q5TG92 126 aa9.94□□□□□ -0.82
SHOX-204ENST00000554971 LOC101927531A0A1B0GV80 90 aa9.92□□□□□ -0.82
SHOX-204ENST00000554971 NOTCH2NLQ7Z3S9 236 aa9.9□□□□□ -0.82
SHOX-204ENST00000554971 LINC00304Q8N9R0 145 aa9.86□□□□□ -0.83
SHOX-204ENST00000554971 LIMD2Q9BT23 127 aa9.86□□□□□ -0.83
SHOX-204ENST00000554971 PCOTHQ58A44 107 aa9.85□□□□□ -0.83
SHOX-204ENST00000554971 LINC00313P59037 77 aa9.84□□□□□ -0.83
SHOX-204ENST00000554971 KRTAP13-3Q3SY46 172 aa9.84□□□□□ -0.83
SHOX-204ENST00000554971 LRP2P98164 4655 aa9.84□□□□□ -0.83
SHOX-204ENST00000554971 LPAP08519 4548 aa9.84□□□□□ -0.83
SHOX-204ENST00000554971 COA5Q86WW8 74 aa9.83□□□□□ -0.84
SHOX-204ENST00000554971 Q8N9P0 234 aaPredicted RBP9.81□□□□□ -0.84
SHOX-204ENST00000554971 BRK1Q8WUW1 75 aa9.81□□□□□ -0.84
SHOX-204ENST00000554971 Q5W150 140 aa9.78□□□□□ -0.84
SHOX-204ENST00000554971 C4orf48Q5BLP8 95 aa9.76□□□□□ -0.85
SHOX-204ENST00000554971 SPAG11AQ6PDA7 123 aa9.76□□□□□ -0.85
SHOX-204ENST00000554971 SPINK1P00995 79 aa9.75□□□□□ -0.85
SHOX-204ENST00000554971 PSPHP1O15172 72 aa9.74□□□□□ -0.85
SHOX-204ENST00000554971 RPS29P62273 56 aaKnown RBP9.72□□□□□ -0.85
SHOX-204ENST00000554971 A8MUN3 132 aa9.71□□□□□ -0.86
SHOX-204ENST00000554971 RETNLBQ9BQ08 111 aa9.71□□□□□ -0.86
SHOX-204ENST00000554971 HRES1P13985 223 aa9.7□□□□□ -0.86
SHOX-204ENST00000554971 Q5VV11 94 aa9.69□□□□□ -0.86
SHOX-204ENST00000554971 KRTAP16-1A8MUX0 517 aa9.68□□□□□ -0.86
SHOX-204ENST00000554971 UBR4Q5T4S7 5183 aa9.68□□□□□ -0.86
SHOX-204ENST00000554971 ACYP2P14621 99 aa9.67□□□□□ -0.86
SHOX-204ENST00000554971 LINC01558Q9Y6Z2 57 aa9.67□□□□□ -0.86
SHOX-204ENST00000554971 IGKV2-30P06310 120 aa9.65□□□□□ -0.86
SHOX-204ENST00000554971 Q75L30 129 aa9.65□□□□□ -0.86
SHOX-204ENST00000554971 PRR15LQ9BU68 103 aa9.64□□□□□ -0.87
SHOX-204ENST00000554971 DMAC1Q96GE9 116 aa9.62□□□□□ -0.87
SHOX-204ENST00000554971 CHKB-CPT1BH3BT56 60 aa9.6□□□□□ -0.87
SHOX-204ENST00000554971 RNF213Q63HN8 5207 aa9.48□□□□□ -0.89
SHOX-204ENST00000554971 A6NED7 52 aa9.48□□□□□ -0.89
SHOX-204ENST00000554971 TPRXLQ17RH7 258 aa9.48□□□□□ -0.89
SHOX-204ENST00000554971 MUC2Q02817 5179 aa9.45□□□□□ -0.9
SHOX-204ENST00000554971 CDC42SE1Q9NRR8 79 aa9.44□□□□□ -0.9
SHOX-204ENST00000554971 IGKV2D-30A0A075B6S6 120 aa9.43□□□□□ -0.9
SHOX-204ENST00000554971 ATP11AUNQ6ZP68 121 aa9.43□□□□□ -0.9
SHOX-204ENST00000554971 C7orf65Q6ZTY9 151 aa9.41□□□□□ -0.9
SHOX-204ENST00000554971 MUC17Q685J3 4493 aa9.41□□□□□ -0.9
SHOX-204ENST00000554971 LCA10Q71F78 164 aa9.4□□□□□ -0.9
SHOX-204ENST00000554971 C20orf166-AS1Q96NR2 134 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms