RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ASB16-AS1Q495Z4 193 aa8.31□□□□□ -1.08
SHMT2-208ENST00000553868 J3KT08 172 aa8.3□□□□□ -1.08
SHMT2-208ENST00000553868 PRR4Q16378 134 aa8.3□□□□□ -1.08
SHMT2-208ENST00000553868 SIGMAR1Q99720 223 aa8.29□□□□□ -1.08
SHMT2-208ENST00000553868 MUC17Q685J3 4493 aa8.27□□□□□ -1.09
SHMT2-208ENST00000553868 LINC00472Q9H8W2 130 aa8.27□□□□□ -1.09
SHMT2-208ENST00000553868 IGKV3D-7A0A0C4DH55 119 aa8.26□□□□□ -1.09
SHMT2-208ENST00000553868 MT-ATP8P03928 68 aa8.25□□□□□ -1.09
SHMT2-208ENST00000553868 IMUPQ9GZP8 106 aa8.24□□□□□ -1.09
SHMT2-208ENST00000553868 IGKV4-1P06312 121 aa8.23□□□□□ -1.09
SHMT2-208ENST00000553868 NDUFB1O75438 58 aa8.22□□□□□ -1.09
SHMT2-208ENST00000553868 DEFB116Q30KQ4 102 aa8.22□□□□□ -1.09
SHMT2-208ENST00000553868 Q96NJ1 140 aa8.22□□□□□ -1.09
SHMT2-208ENST00000553868 A8MWP4 228 aa8.2□□□□□ -1.1
SHMT2-208ENST00000553868 HIST1H4AP62805 103 aaKnown RBP8.2□□□□□ -1.1
SHMT2-208ENST00000553868 C1orf195Q5TG92 126 aa8.2□□□□□ -1.1
SHMT2-208ENST00000553868 DSCR10P59022 87 aa8.19□□□□□ -1.1
SHMT2-208ENST00000553868 KRTAP9-7A8MTY7 169 aa8.16□□□□□ -1.1
SHMT2-208ENST00000553868 K7EQZ3 153 aa8.15□□□□□ -1.1
SHMT2-208ENST00000553868 PRR15Q8IV56 129 aa8.15□□□□□ -1.1
SHMT2-208ENST00000553868 A0A1B0GVX0 72 aa8.14□□□□□ -1.11
SHMT2-208ENST00000553868 Q8N9L7 120 aa8.14□□□□□ -1.11
SHMT2-208ENST00000553868 A0A087WVE0 104 aa8.1□□□□□ -1.11
SHMT2-208ENST00000553868 IGHV6-1A0A0B4J1U7 121 aa8.1□□□□□ -1.11
SHMT2-208ENST00000553868 C8orf87E5RJ46 101 aa8.1□□□□□ -1.11
SHMT2-208ENST00000553868 FP248Q71RG6 208 aaPredicted RBP8.09□□□□□ -1.11
SHMT2-208ENST00000553868 HCG22E2RYF7 251 aa8.08□□□□□ -1.12
SHMT2-208ENST00000553868 SCGB1A1P11684 91 aa8.07□□□□□ -1.12
SHMT2-208ENST00000553868 C8orf17Q9NRJ1 99 aa8.07□□□□□ -1.12
SHMT2-208ENST00000553868 RETNLBQ9BQ08 111 aa8.06□□□□□ -1.12
SHMT2-208ENST00000553868 FAM236AA0A1B0GUQ0 79 aa8.05□□□□□ -1.12
SHMT2-208ENST00000553868 FAM236BA0A1B0GV22 79 aa8.05□□□□□ -1.12
SHMT2-208ENST00000553868 CASC2Q6XLA1 102 aa8.05□□□□□ -1.12
SHMT2-208ENST00000553868 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
SHMT2-208ENST00000553868 LINC00313P59037 77 aa8.04□□□□□ -1.12
SHMT2-208ENST00000553868 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.03□□□□□ -1.12
SHMT2-208ENST00000553868 hDV103S1A0JD37 113 aa8.02□□□□□ -1.13
SHMT2-208ENST00000553868 WFDC13Q8IUB5 93 aa8.02□□□□□ -1.13
SHMT2-208ENST00000553868 ATOX1O00244 68 aa8□□□□□ -1.13
SHMT2-208ENST00000553868 TMEM254Q8TBM7 123 aa8□□□□□ -1.13
SHMT2-208ENST00000553868 IGLV7-46A0A075B6I9 117 aa7.99□□□□□ -1.13
SHMT2-208ENST00000553868 SMIM20Q8N5G0 67 aa7.98□□□□□ -1.13
SHMT2-208ENST00000553868 MRPL34Q9BQ48 92 aaKnown RBP7.98□□□□□ -1.13
SHMT2-208ENST00000553868 NOTCH2NLQ7Z3S9 236 aa7.97□□□□□ -1.13
SHMT2-208ENST00000553868 C9orf92A6NGG3 77 aa7.91□□□□□ -1.14
SHMT2-208ENST00000553868 KRTAP16-1A8MUX0 517 aa7.91□□□□□ -1.14
SHMT2-208ENST00000553868 NDUFS5O43920 106 aa7.91□□□□□ -1.14
SHMT2-208ENST00000553868 TP53AIP1Q9HCN2 124 aa7.91□□□□□ -1.14
SHMT2-208ENST00000553868 TRAV7A0A075B6U4 112 aa7.9□□□□□ -1.14
SHMT2-208ENST00000553868 ANAPC13Q9BS18 74 aa7.9□□□□□ -1.14
SHMT2-208ENST00000553868 Q8N9P0 234 aaPredicted RBP7.89□□□□□ -1.15
SHMT2-208ENST00000553868 KRTAP4-1Q9BYQ7 146 aa7.89□□□□□ -1.15
SHMT2-208ENST00000553868 UQCRQO14949 82 aa7.88□□□□□ -1.15
SHMT2-208ENST00000553868 KRTAP13-3Q3SY46 172 aa7.88□□□□□ -1.15
SHMT2-208ENST00000553868 OCR1Q9BZK8 76 aa7.88□□□□□ -1.15
SHMT2-208ENST00000553868 TPRXLQ17RH7 258 aa7.87□□□□□ -1.15
SHMT2-208ENST00000553868 SERP2Q8N6R1 65 aa7.87□□□□□ -1.15
SHMT2-208ENST00000553868 C20orf166-AS1Q96NR2 134 aa7.84□□□□□ -1.15
SHMT2-208ENST00000553868 A8MUU9 505 aa7.83□□□□□ -1.16
SHMT2-208ENST00000553868 Q75L30 129 aa7.82□□□□□ -1.16
SHMT2-208ENST00000553868 C5orf47Q569G3 176 aa7.81□□□□□ -1.16
SHMT2-208ENST00000553868 LCE2CQ5TA81 110 aa7.81□□□□□ -1.16
SHMT2-208ENST00000553868 COX7CP15954 63 aa7.8□□□□□ -1.16
SHMT2-208ENST00000553868 MP68P56378 58 aa7.8□□□□□ -1.16
SHMT2-208ENST00000553868 TRAV22A0A0B4J277 110 aa7.79□□□□□ -1.16
SHMT2-208ENST00000553868 XP32Q5T750 250 aa7.78□□□□□ -1.16
SHMT2-208ENST00000553868 H0Y9P7 68 aa7.77□□□□□ -1.17
SHMT2-208ENST00000553868 H3BPC8 53 aa7.76□□□□□ -1.17
SHMT2-208ENST00000553868 RPL37P61927 97 aaKnown RBP7.76□□□□□ -1.17
SHMT2-208ENST00000553868 ZCCHC13Q8WW36 166 aaKnown RBP7.76□□□□□ -1.17
SHMT2-208ENST00000553868 SSPOA2VEC9 5147 aa7.75□□□□□ -1.17
SHMT2-208ENST00000553868 LORP23490 312 aaPredicted RBP7.75□□□□□ -1.17
SHMT2-208ENST00000553868 MT1HP80294 61 aa7.75□□□□□ -1.17
SHMT2-208ENST00000553868 PCP4P48539 62 aa7.74□□□□□ -1.17
SHMT2-208ENST00000553868 ATP11AUNQ6ZP68 121 aa7.74□□□□□ -1.17
SHMT2-208ENST00000553868 KRTAP10-6P60371 365 aaPredicted RBP7.71□□□□□ -1.18
SHMT2-208ENST00000553868 Q5W150 140 aa7.71□□□□□ -1.18
SHMT2-208ENST00000553868 C20orf197Q8N268 126 aa7.71□□□□□ -1.18
SHMT2-208ENST00000553868 SYNE2Q8WXH0 6885 aaKnown RBP7.71□□□□□ -1.18
SHMT2-208ENST00000553868 LINC00208Q96KT6 92 aa7.7□□□□□ -1.18
SHMT2-208ENST00000553868 USH2AO75445 5202 aa7.69□□□□□ -1.18
SHMT2-208ENST00000553868 LOC101927531A0A1B0GV80 90 aa7.69□□□□□ -1.18
SHMT2-208ENST00000553868 KRTAP19-2Q3LHN2 52 aa7.69□□□□□ -1.18
SHMT2-208ENST00000553868 C1orf64Q8NEQ6 169 aa7.69□□□□□ -1.18
SHMT2-208ENST00000553868 CCDC179H3BU77 68 aa7.66□□□□□ -1.18
SHMT2-208ENST00000553868 KLKP1Q107X0 134 aa7.66□□□□□ -1.18
SHMT2-208ENST00000553868 SEC61BP60468 96 aaKnown RBP7.65□□□□□ -1.18
SHMT2-208ENST00000553868 SNURFQ9Y675 71 aa7.64□□□□□ -1.19
SHMT2-208ENST00000553868 FCGBPQ9Y6R7 5405 aaPredicted RBP7.63□□□□□ -1.19
SHMT2-208ENST00000553868 NDUFC1O43677 76 aa7.63□□□□□ -1.19
SHMT2-208ENST00000553868 IGKV2-30P06310 120 aa7.63□□□□□ -1.19
SHMT2-208ENST00000553868 C7orf65Q6ZTY9 151 aa7.62□□□□□ -1.19
SHMT2-208ENST00000553868 MACF1Q9UPN3 7388 aaKnown RBP7.62□□□□□ -1.19
SHMT2-208ENST00000553868 IGKV2D-30A0A075B6S6 120 aa7.61□□□□□ -1.19
SHMT2-208ENST00000553868 PCOTHQ58A44 107 aa7.6□□□□□ -1.19
SHMT2-208ENST00000553868 CYP4F30PQ9H0H9 118 aa7.6□□□□□ -1.19
SHMT2-208ENST00000553868 SPINK7P58062 85 aa7.56□□□□□ -1.2
SHMT2-208ENST00000553868 FLGP20930 4061 aaPredicted RBP7.53□□□□□ -1.2
SHMT2-208ENST00000553868 H7BZZ5 65 aa7.52□□□□□ -1.21
SHMT2-208ENST00000553868 M0R2T5 61 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms