RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 SPAG11AQ6PDA7 123 aa7.49□□□□□ -1.21
SHMT2-207ENST00000553837 KMT2AQ03164 3969 aa7.49□□□□□ -1.21
SHMT2-207ENST00000553837 H0Y9J4 135 aa7.47□□□□□ -1.21
SHMT2-207ENST00000553837 TP53AIP1Q9HCN2 124 aa7.47□□□□□ -1.21
SHMT2-207ENST00000553837 MMP24-AS1A0A0U1RRL7 71 aa7.47□□□□□ -1.21
SHMT2-207ENST00000553837 SPINK7P58062 85 aa7.47□□□□□ -1.21
SHMT2-207ENST00000553837 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.46□□□□□ -1.21
SHMT2-207ENST00000553837 DNAH2Q9P225 4427 aa7.46□□□□□ -1.22
SHMT2-207ENST00000553837 PCOTHQ58A44 107 aa7.46□□□□□ -1.22
SHMT2-207ENST00000553837 SPRR1BP22528 89 aa7.44□□□□□ -1.22
SHMT2-207ENST00000553837 PRAC1Q96KF2 57 aa7.44□□□□□ -1.22
SHMT2-207ENST00000553837 KRTAP13-1Q8IUC0 172 aa7.43□□□□□ -1.22
SHMT2-207ENST00000553837 SPACA4Q8TDM5 124 aa7.42□□□□□ -1.22
SHMT2-207ENST00000553837 A0A087WTM6 91 aa7.41□□□□□ -1.22
SHMT2-207ENST00000553837 Q6ZR54 194 aa7.41□□□□□ -1.22
SHMT2-207ENST00000553837 DNAH17Q9UFH2 4485 aa7.4□□□□□ -1.23
SHMT2-207ENST00000553837 HRES1P13985 223 aa7.39□□□□□ -1.23
SHMT2-207ENST00000553837 FRAS1Q86XX4 4008 aa7.38□□□□□ -1.23
SHMT2-207ENST00000553837 DNAH8Q96JB1 4490 aa7.36□□□□□ -1.23
SHMT2-207ENST00000553837 RTL8CO15255 209 aa7.36□□□□□ -1.23
SHMT2-207ENST00000553837 C8orf17Q9NRJ1 99 aa7.35□□□□□ -1.23
SHMT2-207ENST00000553837 ADM2Q7Z4H4 148 aa7.35□□□□□ -1.23
SHMT2-207ENST00000553837 TGP01266 2768 aa7.34□□□□□ -1.23
SHMT2-207ENST00000553837 Q96NJ1 140 aa7.32□□□□□ -1.24
SHMT2-207ENST00000553837 RETNLBQ9BQ08 111 aa7.32□□□□□ -1.24
SHMT2-207ENST00000553837 PSORS1C2Q9UIG4 136 aa7.32□□□□□ -1.24
SHMT2-207ENST00000553837 IGLV9-49A0A0B4J1Y8 123 aa7.31□□□□□ -1.24
SHMT2-207ENST00000553837 ANAPC11Q9NYG5 84 aa7.29□□□□□ -1.24
SHMT2-207ENST00000553837 DNAH6Q9C0G6 4158 aa7.29□□□□□ -1.24
SHMT2-207ENST00000553837 IGLV5-52A0A0A0MRZ9 124 aa7.29□□□□□ -1.24
SHMT2-207ENST00000553837 A0A1B0GVX0 72 aa7.29□□□□□ -1.24
SHMT2-207ENST00000553837 LINC00483Q53H64 154 aa7.29□□□□□ -1.24
SHMT2-207ENST00000553837 MRPL34Q9BQ48 92 aaKnown RBP7.29□□□□□ -1.24
SHMT2-207ENST00000553837 IGHV6-1A0A0B4J1U7 121 aa7.28□□□□□ -1.24
SHMT2-207ENST00000553837 CDK2AP2O75956 126 aa7.27□□□□□ -1.24
SHMT2-207ENST00000553837 SPATA8Q6RVD6 105 aa7.26□□□□□ -1.25
SHMT2-207ENST00000553837 WWC2-AS2Q96NR7 200 aa7.26□□□□□ -1.25
SHMT2-207ENST00000553837 DNAH5Q8TE73 4624 aa7.25□□□□□ -1.25
SHMT2-207ENST00000553837 C1orf134Q5TEV5 83 aa7.25□□□□□ -1.25
SHMT2-207ENST00000553837 DNAH11Q96DT5 4516 aa7.25□□□□□ -1.25
SHMT2-207ENST00000553837 ACYP2P14621 99 aa7.25□□□□□ -1.25
SHMT2-207ENST00000553837 ALMS1Q8TCU4 4167 aa7.24□□□□□ -1.25
SHMT2-207ENST00000553837 ZNF861PO60384 105 aa7.23□□□□□ -1.25
SHMT2-207ENST00000553837 LY6G6CO95867 125 aa7.23□□□□□ -1.25
SHMT2-207ENST00000553837 CSAG1Q6PB30 78 aa7.21□□□□□ -1.26
SHMT2-207ENST00000553837 HYDINQ4G0P3 5121 aa7.2□□□□□ -1.26
SHMT2-207ENST00000553837 KRTAP10-2P60368 255 aa7.2□□□□□ -1.26
SHMT2-207ENST00000553837 ZNF706Q9Y5V0 76 aaPredicted RBP7.2□□□□□ -1.26
SHMT2-207ENST00000553837 PKD1P98161 4303 aa7.18□□□□□ -1.26
SHMT2-207ENST00000553837 A0A1B0GU69 56 aa7.17□□□□□ -1.26
SHMT2-207ENST00000553837 IGLV7-43P04211 117 aa7.17□□□□□ -1.26
SHMT2-207ENST00000553837 NOTCH2NLQ7Z3S9 236 aa7.16□□□□□ -1.26
SHMT2-207ENST00000553837 Q5W150 140 aa7.16□□□□□ -1.26
SHMT2-207ENST00000553837 KRTAP13-3Q3SY46 172 aa7.15□□□□□ -1.26
SHMT2-207ENST00000553837 CIRBP-AS1Q8TBR5 109 aa7.15□□□□□ -1.26
SHMT2-207ENST00000553837 FAT2Q9NYQ8 4349 aa7.15□□□□□ -1.26
SHMT2-207ENST00000553837 MIR22HGQ0VDD5 57 aa7.15□□□□□ -1.27
SHMT2-207ENST00000553837 UQCR11O14957 56 aa7.14□□□□□ -1.27
SHMT2-207ENST00000553837 DMAC1Q96GE9 116 aa7.14□□□□□ -1.27
SHMT2-207ENST00000553837 LRP1BQ9NZR2 4599 aa7.13□□□□□ -1.27
SHMT2-207ENST00000553837 KRTAP10-1P60331 282 aa7.1□□□□□ -1.27
SHMT2-207ENST00000553837 ROMO1P60602 79 aa7.09□□□□□ -1.27
SHMT2-207ENST00000553837 Q6ZSA8 131 aa7.07□□□□□ -1.28
SHMT2-207ENST00000553837 SPINK6Q6UWN8 80 aa7.06□□□□□ -1.28
SHMT2-207ENST00000553837 KRTAP13-2Q52LG2 175 aa7.04□□□□□ -1.28
SHMT2-207ENST00000553837 VPS13BQ7Z7G8 4022 aa7.04□□□□□ -1.28
SHMT2-207ENST00000553837 FAM229AH3BQW9 127 aa7.02□□□□□ -1.29
SHMT2-207ENST00000553837 KMT2CQ8NEZ4 4911 aaKnown RBP7.02□□□□□ -1.29
SHMT2-207ENST00000553837 SSBP3-AS1Q7Z2R9 100 aa7.01□□□□□ -1.29
SHMT2-207ENST00000553837 IGKV2-30P06310 120 aa6.99□□□□□ -1.29
SHMT2-207ENST00000553837 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
SHMT2-207ENST00000553837 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
SHMT2-207ENST00000553837 PKHD1P08F94 4074 aa6.98□□□□□ -1.29
SHMT2-207ENST00000553837 SACSQ9NZJ4 4579 aa6.97□□□□□ -1.29
SHMT2-207ENST00000553837 RYR3Q15413 4870 aa6.95□□□□□ -1.3
SHMT2-207ENST00000553837 RYR2Q92736 4967 aa6.95□□□□□ -1.3
SHMT2-207ENST00000553837 DYNC1H1Q14204 4646 aaKnown RBP6.87□□□□□ -1.31
SHMT2-207ENST00000553837 A8MUU9 505 aa6.86□□□□□ -1.31
SHMT2-207ENST00000553837 KRTAP16-1A8MUX0 517 aa6.86□□□□□ -1.31
SHMT2-207ENST00000553837 IGKV2D-30A0A075B6S6 120 aa6.85□□□□□ -1.31
SHMT2-207ENST00000553837 P0C880 135 aa6.83□□□□□ -1.32
SHMT2-207ENST00000553837 TYMSOSQ8TAI1 123 aa6.82□□□□□ -1.32
SHMT2-207ENST00000553837 SMR3BP02814 79 aaPredicted RBP6.81□□□□□ -1.32
SHMT2-207ENST00000553837 FAT1Q14517 4588 aa6.79□□□□□ -1.32
SHMT2-207ENST00000553837 APOBP04114 4563 aaKnown RBP6.78□□□□□ -1.32
SHMT2-207ENST00000553837 A0A0A0MQY5 61 aa6.78□□□□□ -1.32
SHMT2-207ENST00000553837 SPINK1P00995 79 aa6.78□□□□□ -1.32
SHMT2-207ENST00000553837 LINC00304Q8N9R0 145 aa6.78□□□□□ -1.32
SHMT2-207ENST00000553837 A0A1B0GVY2 172 aa6.77□□□□□ -1.33
SHMT2-207ENST00000553837 KRTAP10-4P60372 401 aaPredicted RBP6.74□□□□□ -1.33
SHMT2-207ENST00000553837 PKHD1L1Q86WI1 4243 aa6.73□□□□□ -1.33
SHMT2-207ENST00000553837 H0YAA0 97 aa6.72□□□□□ -1.33
SHMT2-207ENST00000553837 Q8N1X5 172 aa6.7□□□□□ -1.34
SHMT2-207ENST00000553837 EPPK1P58107 5090 aaKnown RBP6.7□□□□□ -1.34
SHMT2-207ENST00000553837 A0A1B0GU33 70 aa6.68□□□□□ -1.34
SHMT2-207ENST00000553837 RPS29P62273 56 aaKnown RBP6.66□□□□□ -1.34
SHMT2-207ENST00000553837 BIRC6Q9NR09 4857 aa6.64□□□□□ -1.35
SHMT2-207ENST00000553837 K7ERS5 55 aa6.64□□□□□ -1.35
SHMT2-207ENST00000553837 H1FX-AS1Q4G0G2 97 aa6.63□□□□□ -1.35
SHMT2-207ENST00000553837 C20orf166-AS1Q96NR2 134 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms