RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 C14orf177Q52M58 125 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 KCNQ1DNQ9H478 68 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 IGKV2D-30A0A075B6S6 120 aa3.5□□□□□ -1.85
LIMA1-203ENST00000547825 IGKV2-30P06310 120 aa3.5□□□□□ -1.85
LIMA1-203ENST00000547825 MOBPQ13875 183 aa3.5□□□□□ -1.85
LIMA1-203ENST00000547825 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
LIMA1-203ENST00000547825 EPPK1P58107 5090 aaKnown RBP3.5□□□□□ -1.85
LIMA1-203ENST00000547825 PKHD1L1Q86WI1 4243 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 IGLV1-50A0A075B6I6 118 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-203ENST00000547825 DSCR10P59022 87 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 FLG2Q5D862 2391 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-203ENST00000547825 CD164Q04900 197 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 ATP11AUNQ6ZP68 121 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 ANAPC11Q9NYG5 84 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 DNAH8Q96JB1 4490 aa3.49□□□□□ -1.85
LIMA1-203ENST00000547825 DYNC1H1Q14204 4646 aaKnown RBP3.48□□□□□ -1.85
LIMA1-203ENST00000547825 A0A1B0GU69 56 aa3.48□□□□□ -1.85
LIMA1-203ENST00000547825 LINC00588Q9Y4M8 146 aa3.48□□□□□ -1.85
LIMA1-203ENST00000547825 LOC101927531A0A1B0GV80 90 aa3.48□□□□□ -1.85
LIMA1-203ENST00000547825 PRR15Q8IV56 129 aa3.48□□□□□ -1.85
LIMA1-203ENST00000547825 KRTAP9-3Q9BYQ3 159 aa3.48□□□□□ -1.85
LIMA1-203ENST00000547825 PKHD1P08F94 4074 aa3.47□□□□□ -1.85
LIMA1-203ENST00000547825 DNAH5Q8TE73 4624 aa3.47□□□□□ -1.85
LIMA1-203ENST00000547825 A8MWP4 228 aa3.47□□□□□ -1.85
LIMA1-203ENST00000547825 KTN1-AS1Q86SY8 53 aa3.47□□□□□ -1.85
LIMA1-203ENST00000547825 LINC00612Q8N6U2 182 aa3.47□□□□□ -1.85
LIMA1-203ENST00000547825 IGLV5-48A0A075B6I7 105 aa3.46□□□□□ -1.86
LIMA1-203ENST00000547825 VPS13BQ7Z7G8 4022 aa3.46□□□□□ -1.86
LIMA1-203ENST00000547825 A0A1B0GW54 56 aa3.46□□□□□ -1.86
LIMA1-203ENST00000547825 A8MU10 97 aa3.45□□□□□ -1.86
LIMA1-203ENST00000547825 Q1T7F1 81 aa3.45□□□□□ -1.86
LIMA1-203ENST00000547825 RBM12B-AS1Q9P1G2 102 aa3.45□□□□□ -1.86
LIMA1-203ENST00000547825 ACYP2P14621 99 aa3.44□□□□□ -1.86
LIMA1-203ENST00000547825 CYP4F30PQ9H0H9 118 aa3.44□□□□□ -1.86
LIMA1-203ENST00000547825 TP53AIP1Q9HCN2 124 aa3.44□□□□□ -1.86
LIMA1-203ENST00000547825 ZNF706Q9Y5V0 76 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-203ENST00000547825 C16orf90A8MZG2 172 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 H3BPC8 53 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 DNAH10OSP0CZ25 163 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-203ENST00000547825 A0A087X002 238 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 K7ERS5 55 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 C8orf87E5RJ46 101 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 SPACA4Q8TDM5 124 aa3.43□□□□□ -1.86
LIMA1-203ENST00000547825 Q5VV11 94 aa3.42□□□□□ -1.86
LIMA1-203ENST00000547825 C7orf65Q6ZTY9 151 aa3.42□□□□□ -1.86
LIMA1-203ENST00000547825 LY6G6CO95867 125 aa3.42□□□□□ -1.86
LIMA1-203ENST00000547825 MRPL34Q9BQ48 92 aaKnown RBP3.41□□□□□ -1.86
LIMA1-203ENST00000547825 C8orf17Q9NRJ1 99 aa3.41□□□□□ -1.86
LIMA1-203ENST00000547825 H3BNG1 76 aa3.41□□□□□ -1.86
LIMA1-203ENST00000547825 APOBP04114 4563 aaKnown RBP3.4□□□□□ -1.87
LIMA1-203ENST00000547825 SPRR4Q96PI1 79 aa3.4□□□□□ -1.87
LIMA1-203ENST00000547825 LCE3BQ5TA77 95 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 LCA10Q71F78 164 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 CDC42SE1Q9NRR8 79 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 SPINK7P58062 85 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 CNBPP62633 177 aaKnown RBP3.39□□□□□ -1.87
LIMA1-203ENST00000547825 LCE5AQ5TCM9 118 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 HSPG2P98160 4391 aa3.39□□□□□ -1.87
LIMA1-203ENST00000547825 RTL8CO15255 209 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 NOTCH2NLQ7Z3S9 236 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 BIRC6Q9NR09 4857 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 UQCR11O14957 56 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 LINC00313P59037 77 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 MIR22HGQ0VDD5 57 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 KRTAP26-1Q6PEX3 210 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 SPANXA2-OT1Q8N9U9 137 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 FAT3Q8TDW7 4589 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 C9orf163Q8N9P6 203 aa3.38□□□□□ -1.87
LIMA1-203ENST00000547825 A0A1B0GVX0 72 aa3.37□□□□□ -1.87
LIMA1-203ENST00000547825 KRTAP7-1Q8IUC3 87 aa3.37□□□□□ -1.87
LIMA1-203ENST00000547825 HERC2O95714 4834 aa3.36□□□□□ -1.87
LIMA1-203ENST00000547825 TLX1NBP0CAT3 122 aa3.36□□□□□ -1.87
LIMA1-203ENST00000547825 SSBP3-AS1Q7Z2R9 100 aa3.36□□□□□ -1.87
LIMA1-203ENST00000547825 IGLV7-46A0A075B6I9 117 aa3.36□□□□□ -1.87
LIMA1-203ENST00000547825 HRES1P13985 223 aa3.34□□□□□ -1.87
LIMA1-203ENST00000547825 NBDYA0A0U1RRE5 68 aa3.34□□□□□ -1.88
LIMA1-203ENST00000547825 MMP24-AS1A0A0U1RRL7 71 aa3.34□□□□□ -1.88
LIMA1-203ENST00000547825 Q96NJ1 140 aa3.34□□□□□ -1.88
LIMA1-203ENST00000547825 LRP1BQ9NZR2 4599 aa3.33□□□□□ -1.88
LIMA1-203ENST00000547825 CRIPTQ9P021 101 aa3.33□□□□□ -1.88
LIMA1-203ENST00000547825 SPRR1AP35321 89 aa3.33□□□□□ -1.88
LIMA1-203ENST00000547825 PSORS1C2Q9UIG4 136 aa3.33□□□□□ -1.88
LIMA1-203ENST00000547825 ZCCHC13Q8WW36 166 aaKnown RBP3.32□□□□□ -1.88
LIMA1-203ENST00000547825 C1orf134Q5TEV5 83 aa3.32□□□□□ -1.88
LIMA1-203ENST00000547825 LINC00472Q9H8W2 130 aa3.32□□□□□ -1.88
LIMA1-203ENST00000547825 LINC01554Q52M75 96 aa3.31□□□□□ -1.88
LIMA1-203ENST00000547825 SPINT4Q6UDR6 99 aa3.31□□□□□ -1.88
LIMA1-203ENST00000547825 LINC01558Q9Y6Z2 57 aa3.31□□□□□ -1.88
LIMA1-203ENST00000547825 NUPR2A6NF83 97 aa3.31□□□□□ -1.88
LIMA1-203ENST00000547825 ADM2Q7Z4H4 148 aa3.3□□□□□ -1.88
LIMA1-203ENST00000547825 RYR1P21817 5038 aa3.3□□□□□ -1.88
LIMA1-203ENST00000547825 ZNF861PO60384 105 aa3.3□□□□□ -1.88
LIMA1-203ENST00000547825 CSAG1Q6PB30 78 aa3.3□□□□□ -1.88
LIMA1-203ENST00000547825 LCE6AA0A183 80 aa3.3□□□□□ -1.88
LIMA1-203ENST00000547825 KRTAP29-1A8MX34 341 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-203ENST00000547825 KRTAP4-16G5E9R7 235 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-203ENST00000547825 KRTAP1-5Q9BYS1 174 aa3.29□□□□□ -1.88
LIMA1-203ENST00000547825 A0A1B0GVY2 172 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms