RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 KRTAP4-6Q9BYQ5 205 aa5.93□□□□□ -1.46
YBX3-216ENST00000544622 VPS25Q9BRG1 176 aa5.92□□□□□ -1.46
YBX3-216ENST00000544622 LOC110117498A0A087WWA1 95 aa5.91□□□□□ -1.46
YBX3-216ENST00000544622 A0A1B0GW54 56 aa5.91□□□□□ -1.46
YBX3-216ENST00000544622 C21orf62-AS1Q17RA5 79 aa5.91□□□□□ -1.46
YBX3-216ENST00000544622 C9orf118A6NHY6 69 aa5.9□□□□□ -1.46
YBX3-216ENST00000544622 TAX1BP3O14907 124 aa5.9□□□□□ -1.46
YBX3-216ENST00000544622 BATFQ16520 125 aa5.9□□□□□ -1.46
YBX3-216ENST00000544622 LYRM7Q5U5X0 104 aa5.9□□□□□ -1.46
YBX3-216ENST00000544622 PDE6GP18545 87 aa5.89□□□□□ -1.47
YBX3-216ENST00000544622 FSIP2Q5CZC0 6907 aa5.88□□□□□ -1.47
YBX3-216ENST00000544622 IGHV6-1A0A0B4J1U7 121 aa5.87□□□□□ -1.47
YBX3-216ENST00000544622 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
YBX3-216ENST00000544622 A0A1W2PPM0 123 aa5.87□□□□□ -1.47
YBX3-216ENST00000544622 J3KT08 172 aa5.87□□□□□ -1.47
YBX3-216ENST00000544622 C8orf87E5RJ46 101 aa5.86□□□□□ -1.47
YBX3-216ENST00000544622 C14orf132Q9NPU4 83 aa5.86□□□□□ -1.47
YBX3-216ENST00000544622 KRTAP10-6P60371 365 aaPredicted RBP5.85□□□□□ -1.47
YBX3-216ENST00000544622 COX6B2Q6YFQ2 88 aa5.85□□□□□ -1.47
YBX3-216ENST00000544622 H3BT86 120 aa5.83□□□□□ -1.48
YBX3-216ENST00000544622 Q8N9P0 234 aaPredicted RBP5.81□□□□□ -1.48
YBX3-216ENST00000544622 IGKV3D-7A0A0C4DH55 119 aa5.8□□□□□ -1.48
YBX3-216ENST00000544622 A8MWP4 228 aa5.8□□□□□ -1.48
YBX3-216ENST00000544622 MPLKIPQ8TAP9 179 aa5.8□□□□□ -1.48
YBX3-216ENST00000544622 NDUFB1O75438 58 aa5.79□□□□□ -1.48
YBX3-216ENST00000544622 MTURNQ8N3F0 131 aa5.79□□□□□ -1.48
YBX3-216ENST00000544622 M0R2T5 61 aa5.78□□□□□ -1.48
YBX3-216ENST00000544622 HRES1P13985 223 aa5.78□□□□□ -1.48
YBX3-216ENST00000544622 NREPQ16612 68 aa5.78□□□□□ -1.48
YBX3-216ENST00000544622 PRR15Q8IV56 129 aa5.77□□□□□ -1.49
YBX3-216ENST00000544622 C8orf17Q9NRJ1 99 aa5.77□□□□□ -1.49
YBX3-216ENST00000544622 ZCCHC13Q8WW36 166 aaKnown RBP5.76□□□□□ -1.49
YBX3-216ENST00000544622 SPCS1Q9Y6A9 102 aa5.76□□□□□ -1.49
YBX3-216ENST00000544622 COL5A1-AS1Q5SY13 56 aa5.75□□□□□ -1.49
YBX3-216ENST00000544622 KRTAP9-6A0A140TA67 174 aa5.74□□□□□ -1.49
YBX3-216ENST00000544622 PRO0461Q9UI25 63 aa5.74□□□□□ -1.49
YBX3-216ENST00000544622 SVIPQ8NHG7 77 aa5.73□□□□□ -1.49
YBX3-216ENST00000544622 MMP24-AS1A0A0U1RRL7 71 aa5.72□□□□□ -1.49
YBX3-216ENST00000544622 Q6ZVQ6 151 aa5.72□□□□□ -1.49
YBX3-216ENST00000544622 SPINK7P58062 85 aa5.71□□□□□ -1.5
YBX3-216ENST00000544622 K7EP34 96 aa5.7□□□□□ -1.5
YBX3-216ENST00000544622 K7EQZ3 153 aa5.7□□□□□ -1.5
YBX3-216ENST00000544622 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
YBX3-216ENST00000544622 TMEM254Q8TBM7 123 aa5.69□□□□□ -1.5
YBX3-216ENST00000544622 RBM12B-AS1Q9P1G2 102 aa5.69□□□□□ -1.5
YBX3-216ENST00000544622 MRPL34Q9BQ48 92 aaKnown RBP5.68□□□□□ -1.5
YBX3-216ENST00000544622 BPY2O14599 106 aa5.67□□□□□ -1.5
YBX3-216ENST00000544622 hDV103S1A0JD37 113 aa5.66□□□□□ -1.5
YBX3-216ENST00000544622 CRCT1Q9UGL9 99 aa5.65□□□□□ -1.5
YBX3-216ENST00000544622 FAM236DA0A1B0GTK5 79 aa5.64□□□□□ -1.51
YBX3-216ENST00000544622 FAM236CP0DP71 79 aa5.64□□□□□ -1.51
YBX3-216ENST00000544622 LINC00846Q9NV44 126 aa5.64□□□□□ -1.51
YBX3-216ENST00000544622 Q8N9L7 120 aa5.62□□□□□ -1.51
YBX3-216ENST00000544622 PCP4L1A6NKN8 68 aa5.61□□□□□ -1.51
YBX3-216ENST00000544622 F8W1H4 67 aa5.61□□□□□ -1.51
YBX3-216ENST00000544622 USH2AO75445 5202 aa5.61□□□□□ -1.51
YBX3-216ENST00000544622 GTF2H5Q6ZYL4 71 aa5.61□□□□□ -1.51
YBX3-216ENST00000544622 Q5W150 140 aa5.6□□□□□ -1.51
YBX3-216ENST00000544622 MT2AP02795 61 aa5.59□□□□□ -1.51
YBX3-216ENST00000544622 UBL5Q9BZL1 73 aa5.59□□□□□ -1.51
YBX3-216ENST00000544622 WFDC13Q8IUB5 93 aa5.58□□□□□ -1.52
YBX3-216ENST00000544622 SSPOA2VEC9 5147 aa5.57□□□□□ -1.52
YBX3-216ENST00000544622 NDUFS5O43920 106 aa5.57□□□□□ -1.52
YBX3-216ENST00000544622 CASC2Q6XLA1 102 aa5.57□□□□□ -1.52
YBX3-216ENST00000544622 ETDBQ3ZM63 59 aa5.56□□□□□ -1.52
YBX3-216ENST00000544622 MT1FP04733 61 aa5.55□□□□□ -1.52
YBX3-216ENST00000544622 HCG22E2RYF7 251 aa5.54□□□□□ -1.52
YBX3-216ENST00000544622 KRTAP9-3Q9BYQ3 159 aa5.52□□□□□ -1.53
YBX3-216ENST00000544622 CXCL6P80162 114 aa5.51□□□□□ -1.53
YBX3-216ENST00000544622 C7orf65Q6ZTY9 151 aa5.5□□□□□ -1.53
YBX3-216ENST00000544622 IGKV2D-30A0A075B6S6 120 aa5.49□□□□□ -1.53
YBX3-216ENST00000544622 IGKV2-30P06310 120 aa5.49□□□□□ -1.53
YBX3-216ENST00000544622 H1FX-AS1Q4G0G2 97 aa5.49□□□□□ -1.53
YBX3-216ENST00000544622 KRTAP10-10P60014 251 aa5.48□□□□□ -1.53
YBX3-216ENST00000544622 FAM240AA0A1B0GVK7 77 aa5.44□□□□□ -1.54
YBX3-216ENST00000544622 ACYP1P07311 99 aa5.44□□□□□ -1.54
YBX3-216ENST00000544622 C4orf26Q17RF5 130 aa5.43□□□□□ -1.54
YBX3-216ENST00000544622 TP53AIP1Q9HCN2 124 aa5.43□□□□□ -1.54
YBX3-216ENST00000544622 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
YBX3-216ENST00000544622 KRTAP3-1Q9BYR8 98 aa5.42□□□□□ -1.54
YBX3-216ENST00000544622 ATP5EP2Q5VTU8 51 aa5.36□□□□□ -1.55
YBX3-216ENST00000544622 FCGBPQ9Y6R7 5405 aaPredicted RBP5.36□□□□□ -1.55
YBX3-216ENST00000544622 A0A1B0GV90 55 aa5.34□□□□□ -1.55
YBX3-216ENST00000544622 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
YBX3-216ENST00000544622 C1orf64Q8NEQ6 169 aa5.33□□□□□ -1.56
YBX3-216ENST00000544622 CYP4F30PQ9H0H9 118 aa5.33□□□□□ -1.56
YBX3-216ENST00000544622 KRTAP19-1Q8IUB9 90 aa5.32□□□□□ -1.56
YBX3-216ENST00000544622 TRAV22A0A0B4J277 110 aa5.31□□□□□ -1.56
YBX3-216ENST00000544622 LINC00643Q86TS7 51 aa5.31□□□□□ -1.56
YBX3-216ENST00000544622 HIST1H4AP62805 103 aaKnown RBP5.3□□□□□ -1.56
YBX3-216ENST00000544622 A0A087WVE0 104 aa5.28□□□□□ -1.56
YBX3-216ENST00000544622 LOC101927531A0A1B0GV80 90 aa5.28□□□□□ -1.56
YBX3-216ENST00000544622 C5orf47Q569G3 176 aa5.28□□□□□ -1.56
YBX3-216ENST00000544622 LCA10Q71F78 164 aa5.28□□□□□ -1.56
YBX3-216ENST00000544622 UQCRQO14949 82 aa5.27□□□□□ -1.57
YBX3-216ENST00000544622 S4R3F8 94 aa5.27□□□□□ -1.57
YBX3-216ENST00000544622 MACF1Q9UPN3 7388 aaKnown RBP5.27□□□□□ -1.57
YBX3-216ENST00000544622 KRTAP19-6Q3LI70 58 aa5.26□□□□□ -1.57
YBX3-216ENST00000544622 CSAG1Q6PB30 78 aa5.25□□□□□ -1.57
YBX3-216ENST00000544622 SYNE2Q8WXH0 6885 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms