RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 ZNF469Q96JG9 3925 aaPredicted RBP4.15□□□□□ -1.75
SRGAP1-206ENST00000543397 SPANXA2-OT1Q8N9U9 137 aa4.15□□□□□ -1.75
SRGAP1-206ENST00000543397 VCANP13611 3396 aa4.14□□□□□ -1.75
SRGAP1-206ENST00000543397 NBEAQ8NFP9 2946 aa4.14□□□□□ -1.75
SRGAP1-206ENST00000543397 A0A0D9SG42 100 aa4.14□□□□□ -1.75
SRGAP1-206ENST00000543397 TNRC18O15417 2968 aaPredicted RBP4.13□□□□□ -1.75
SRGAP1-206ENST00000543397 KALRNO60229 2985 aa4.13□□□□□ -1.75
SRGAP1-206ENST00000543397 PANO1I0J062 215 aa4.13□□□□□ -1.75
SRGAP1-206ENST00000543397 LRBAP50851 2863 aa4.12□□□□□ -1.75
SRGAP1-206ENST00000543397 BSNQ9UPA5 3926 aa4.12□□□□□ -1.75
SRGAP1-206ENST00000543397 MMP24-AS1A0A0U1RRL7 71 aa4.12□□□□□ -1.75
SRGAP1-206ENST00000543397 HRES1P13985 223 aa4.11□□□□□ -1.75
SRGAP1-206ENST00000543397 FREM2Q5SZK8 3169 aa4.11□□□□□ -1.75
SRGAP1-206ENST00000543397 SPINK7P58062 85 aa4.11□□□□□ -1.75
SRGAP1-206ENST00000543397 CELSR2Q9HCU4 2923 aa4.11□□□□□ -1.75
SRGAP1-206ENST00000543397 LINC00472Q9H8W2 130 aa4.1□□□□□ -1.75
SRGAP1-206ENST00000543397 A0A087X002 238 aa4.09□□□□□ -1.75
SRGAP1-206ENST00000543397 ASH1LQ9NR48 2969 aaKnown RBP4.09□□□□□ -1.76
SRGAP1-206ENST00000543397 Q6ZRN7 208 aaPredicted RBP4.08□□□□□ -1.76
SRGAP1-206ENST00000543397 S4R3F8 94 aa4.08□□□□□ -1.76
SRGAP1-206ENST00000543397 MUC3AQ02505 3323 aa4.07□□□□□ -1.76
SRGAP1-206ENST00000543397 KRTAP3-3Q9BYR6 98 aa4.07□□□□□ -1.76
SRGAP1-206ENST00000543397 KRTAP3-2Q9BYR7 98 aa4.07□□□□□ -1.76
SRGAP1-206ENST00000543397 ZANQ9Y493 2812 aa4.07□□□□□ -1.76
SRGAP1-206ENST00000543397 Q5W150 140 aa4.06□□□□□ -1.76
SRGAP1-206ENST00000543397 DCHS2Q6V1P9 2916 aa4.06□□□□□ -1.76
SRGAP1-206ENST00000543397 DMXL1Q9Y485 3027 aa4.05□□□□□ -1.76
SRGAP1-206ENST00000543397 KRTAP4-16G5E9R7 235 aaPredicted RBP4.05□□□□□ -1.76
SRGAP1-206ENST00000543397 A0A1B0GU33 70 aa4.04□□□□□ -1.76
SRGAP1-206ENST00000543397 A8MU10 97 aa4.04□□□□□ -1.76
SRGAP1-206ENST00000543397 R4GN34 69 aa4.03□□□□□ -1.76
SRGAP1-206ENST00000543397 TENM3Q9P273 2699 aa4.02□□□□□ -1.77
SRGAP1-206ENST00000543397 CFAP47Q6ZTR5 3102 aa4.02□□□□□ -1.77
SRGAP1-206ENST00000543397 NF1P21359 2839 aa4.01□□□□□ -1.77
SRGAP1-206ENST00000543397 SPENQ96T58 3664 aaKnown RBP4□□□□□ -1.77
SRGAP1-206ENST00000543397 SMG1Q96Q15 3661 aaKnown RBP3.98□□□□□ -1.77
SRGAP1-206ENST00000543397 RPS29P62273 56 aaKnown RBP3.98□□□□□ -1.77
SRGAP1-206ENST00000543397 KRTAP11-1Q8IUC1 163 aa3.98□□□□□ -1.77
SRGAP1-206ENST00000543397 TENM1Q9UKZ4 2725 aa3.98□□□□□ -1.77
SRGAP1-206ENST00000543397 CUBNO60494 3623 aa3.97□□□□□ -1.77
SRGAP1-206ENST00000543397 SPEGQ15772 3267 aa3.96□□□□□ -1.78
SRGAP1-206ENST00000543397 KRTAP7-1Q8IUC3 87 aa3.93□□□□□ -1.78
SRGAP1-206ENST00000543397 M0QZ58 72 aa3.93□□□□□ -1.78
SRGAP1-206ENST00000543397 KRTAP13-2Q52LG2 175 aa3.93□□□□□ -1.78
SRGAP1-206ENST00000543397 MXRA5Q9NR99 2828 aa3.93□□□□□ -1.78
SRGAP1-206ENST00000543397 ASPMQ8IZT6 3477 aa3.92□□□□□ -1.78
SRGAP1-206ENST00000543397 TENM2Q9NT68 2774 aa3.92□□□□□ -1.78
SRGAP1-206ENST00000543397 KRTAP13-1Q8IUC0 172 aa3.91□□□□□ -1.78
SRGAP1-206ENST00000543397 FBN2P35556 2912 aa3.91□□□□□ -1.78
SRGAP1-206ENST00000543397 HRNRQ86YZ3 2850 aaPredicted RBP3.9□□□□□ -1.78
SRGAP1-206ENST00000543397 PLAC4Q8WY50 150 aa3.9□□□□□ -1.79
SRGAP1-206ENST00000543397 KRTAP29-1A8MX34 341 aaPredicted RBP3.9□□□□□ -1.79
SRGAP1-206ENST00000543397 PKD1L1Q8TDX9 2849 aa3.9□□□□□ -1.79
SRGAP1-206ENST00000543397 LOC400499M0QZD8 3231 aa3.89□□□□□ -1.79
SRGAP1-206ENST00000543397 H1FX-AS1Q4G0G2 97 aa3.88□□□□□ -1.79
SRGAP1-206ENST00000543397 SPATA8Q6RVD6 105 aa3.88□□□□□ -1.79
SRGAP1-206ENST00000543397 RPL37P61927 97 aaKnown RBP3.87□□□□□ -1.79
SRGAP1-206ENST00000543397 DCHS1Q96JQ0 3298 aa3.84□□□□□ -1.79
SRGAP1-206ENST00000543397 CSMD3Q7Z407 3707 aa3.84□□□□□ -1.79
SRGAP1-206ENST00000543397 PP632Q6XCG6 107 aa3.84□□□□□ -1.8
SRGAP1-206ENST00000543397 CELSR1Q9NYQ6 3014 aa3.82□□□□□ -1.8
SRGAP1-206ENST00000543397 VWFP04275 2813 aa3.79□□□□□ -1.8
SRGAP1-206ENST00000543397 SVEP1Q4LDE5 3571 aa3.79□□□□□ -1.8
SRGAP1-206ENST00000543397 KRTAP1-4P0C5Y4 121 aa3.78□□□□□ -1.8
SRGAP1-206ENST00000543397 P0C880 135 aa3.77□□□□□ -1.81
SRGAP1-206ENST00000543397 TGP01266 2768 aa3.74□□□□□ -1.81
SRGAP1-206ENST00000543397 XP32Q5T750 250 aa3.74□□□□□ -1.81
SRGAP1-206ENST00000543397 PDZD2O15018 2839 aa3.74□□□□□ -1.81
SRGAP1-206ENST00000543397 TPRXLQ17RH7 258 aa3.73□□□□□ -1.81
SRGAP1-206ENST00000543397 PRO2289Q9P1D8 64 aa3.72□□□□□ -1.81
SRGAP1-206ENST00000543397 FBN1P35555 2871 aaKnown RBP3.71□□□□□ -1.82
SRGAP1-206ENST00000543397 SRRM2Q9UQ35 2752 aaKnown RBP3.7□□□□□ -1.82
SRGAP1-206ENST00000543397 OTOGQ6ZRI0 2925 aa3.69□□□□□ -1.82
SRGAP1-206ENST00000543397 A0A1B0GVY2 172 aa3.68□□□□□ -1.82
SRGAP1-206ENST00000543397 KRTAP13-3Q3SY46 172 aa3.64□□□□□ -1.83
SRGAP1-206ENST00000543397 TNP1P09430 55 aa3.62□□□□□ -1.83
SRGAP1-206ENST00000543397 KRTAP10-8P60410 259 aa3.62□□□□□ -1.83
SRGAP1-206ENST00000543397 KRTAP10-10P60014 251 aa3.61□□□□□ -1.83
SRGAP1-206ENST00000543397 INE1O15225 51 aa3.58□□□□□ -1.84
SRGAP1-206ENST00000543397 FBN3Q75N90 2809 aa3.52□□□□□ -1.85
SRGAP1-206ENST00000543397 C10orf95Q9H7T3 257 aa3.52□□□□□ -1.85
SRGAP1-206ENST00000543397 KRTAP15-1Q3LI76 137 aa3.51□□□□□ -1.85
SRGAP1-206ENST00000543397 COL7A1Q02388 2944 aa3.46□□□□□ -1.86
SRGAP1-206ENST00000543397 KRTAP3-1Q9BYR8 98 aa3.43□□□□□ -1.86
SRGAP1-206ENST00000543397 LCE2DQ5TA82 110 aaPredicted RBP3.43□□□□□ -1.86
SRGAP1-206ENST00000543397 MEGF8Q7Z7M0 2845 aa3.41□□□□□ -1.86
SRGAP1-206ENST00000543397 H0YAA0 97 aa3.41□□□□□ -1.86
SRGAP1-206ENST00000543397 ANK3Q12955 4377 aaKnown RBP3.39□□□□□ -1.87
SRGAP1-206ENST00000543397 AKAP9Q99996 3911 aa3.38□□□□□ -1.87
SRGAP1-206ENST00000543397 LCE2CQ5TA81 110 aa3.36□□□□□ -1.87
SRGAP1-206ENST00000543397 TRRAPQ9Y4A5 3859 aa3.36□□□□□ -1.87
SRGAP1-206ENST00000543397 MT1HL1P0DM35 61 aa3.35□□□□□ -1.87
SRGAP1-206ENST00000543397 ANK2Q01484 3957 aa3.35□□□□□ -1.87
SRGAP1-206ENST00000543397 KRTAP4-5Q9BYR2 181 aa3.3□□□□□ -1.88
SRGAP1-206ENST00000543397 KRTAP19-4Q3LI73 84 aa3.26□□□□□ -1.89
SRGAP1-206ENST00000543397 LCE2BO14633 110 aa3.25□□□□□ -1.89
SRGAP1-206ENST00000543397 KRTAP10-4P60372 401 aaPredicted RBP3.24□□□□□ -1.89
SRGAP1-206ENST00000543397 KRTAP12-2P59991 146 aa3.24□□□□□ -1.89
SRGAP1-206ENST00000543397 KRTAP13-4Q3LI77 160 aa3.22□□□□□ -1.89
SRGAP1-206ENST00000543397 KRTAP12-1P59990 96 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms