RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 J3KT08 172 aa6.75□□□□□ -1.33
DDX55-210ENST00000543016 Q96NJ1 140 aa6.75□□□□□ -1.33
DDX55-210ENST00000543016 ETDBQ3ZM63 59 aa6.74□□□□□ -1.33
DDX55-210ENST00000543016 KRTAP9-9Q9BYP9 154 aa6.74□□□□□ -1.33
DDX55-210ENST00000543016 KRTAP9-4Q9BYQ2 154 aa6.74□□□□□ -1.33
DDX55-210ENST00000543016 NREPQ16612 68 aa6.73□□□□□ -1.33
DDX55-210ENST00000543016 IGKV4-1P06312 121 aa6.72□□□□□ -1.33
DDX55-210ENST00000543016 SIGMAR1Q99720 223 aa6.71□□□□□ -1.34
DDX55-210ENST00000543016 NDUFB1O75438 58 aa6.68□□□□□ -1.34
DDX55-210ENST00000543016 LRP2P98164 4655 aa6.68□□□□□ -1.34
DDX55-210ENST00000543016 UBL5Q9BZL1 73 aa6.67□□□□□ -1.34
DDX55-210ENST00000543016 C9orf92A6NGG3 77 aa6.66□□□□□ -1.34
DDX55-210ENST00000543016 ACYP1P07311 99 aa6.66□□□□□ -1.34
DDX55-210ENST00000543016 DEFB116Q30KQ4 102 aa6.66□□□□□ -1.34
DDX55-210ENST00000543016 A8MWP4 228 aa6.65□□□□□ -1.34
DDX55-210ENST00000543016 C8orf87E5RJ46 101 aa6.65□□□□□ -1.34
DDX55-210ENST00000543016 A0A1B0GVX0 72 aa6.64□□□□□ -1.35
DDX55-210ENST00000543016 LINC00313P59037 77 aa6.64□□□□□ -1.35
DDX55-210ENST00000543016 SEC61BP60468 96 aaKnown RBP6.64□□□□□ -1.35
DDX55-210ENST00000543016 Q6ZVQ6 151 aa6.64□□□□□ -1.35
DDX55-210ENST00000543016 LPAP08519 4548 aa6.63□□□□□ -1.35
DDX55-210ENST00000543016 FAM240AA0A1B0GVK7 77 aa6.63□□□□□ -1.35
DDX55-210ENST00000543016 H3BS24 57 aa6.63□□□□□ -1.35
DDX55-210ENST00000543016 BPY2O14599 106 aa6.63□□□□□ -1.35
DDX55-210ENST00000543016 LINC00846Q9NV44 126 aa6.63□□□□□ -1.35
DDX55-210ENST00000543016 IGHV6-1A0A0B4J1U7 121 aa6.61□□□□□ -1.35
DDX55-210ENST00000543016 Q75L30 129 aa6.6□□□□□ -1.35
DDX55-210ENST00000543016 PRR15Q8IV56 129 aa6.6□□□□□ -1.35
DDX55-210ENST00000543016 IGKV3D-7A0A0C4DH55 119 aa6.59□□□□□ -1.35
DDX55-210ENST00000543016 J3QR89 54 aa6.59□□□□□ -1.35
DDX55-210ENST00000543016 DSCR10P59022 87 aa6.59□□□□□ -1.35
DDX55-210ENST00000543016 RPL37P61927 97 aaKnown RBP6.59□□□□□ -1.35
DDX55-210ENST00000543016 C20orf166-AS1Q96NR2 134 aa6.58□□□□□ -1.36
DDX55-210ENST00000543016 KRTAP4-8A0A0G2JLE6 195 aa6.57□□□□□ -1.36
DDX55-210ENST00000543016 A8MUU9 505 aa6.56□□□□□ -1.36
DDX55-210ENST00000543016 CXCL6P80162 114 aa6.56□□□□□ -1.36
DDX55-210ENST00000543016 C8orf17Q9NRJ1 99 aa6.55□□□□□ -1.36
DDX55-210ENST00000543016 KRTAP16-1A8MUX0 517 aa6.54□□□□□ -1.36
DDX55-210ENST00000543016 ATP11AUNQ6ZP68 121 aa6.54□□□□□ -1.36
DDX55-210ENST00000543016 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
DDX55-210ENST00000543016 UBR4Q5T4S7 5183 aa6.53□□□□□ -1.36
DDX55-210ENST00000543016 K7EQZ3 153 aa6.53□□□□□ -1.36
DDX55-210ENST00000543016 ATP5EP2Q5VTU8 51 aa6.52□□□□□ -1.37
DDX55-210ENST00000543016 PCOTHQ58A44 107 aa6.51□□□□□ -1.37
DDX55-210ENST00000543016 TMEM254Q8TBM7 123 aa6.51□□□□□ -1.37
DDX55-210ENST00000543016 Q8N9P0 234 aaPredicted RBP6.5□□□□□ -1.37
DDX55-210ENST00000543016 MUC17Q685J3 4493 aa6.5□□□□□ -1.37
DDX55-210ENST00000543016 MMP24-AS1A0A0U1RRL7 71 aa6.49□□□□□ -1.37
DDX55-210ENST00000543016 hDV103S1A0JD37 113 aa6.49□□□□□ -1.37
DDX55-210ENST00000543016 LINC00643Q86TS7 51 aa6.49□□□□□ -1.37
DDX55-210ENST00000543016 MRPL34Q9BQ48 92 aaKnown RBP6.48□□□□□ -1.37
DDX55-210ENST00000543016 Q8N9L7 120 aa6.46□□□□□ -1.38
DDX55-210ENST00000543016 K7ERU9 68 aa6.45□□□□□ -1.38
DDX55-210ENST00000543016 CASC2Q6XLA1 102 aa6.45□□□□□ -1.38
DDX55-210ENST00000543016 A0A0U1RQV1 116 aa6.44□□□□□ -1.38
DDX55-210ENST00000543016 HCG22E2RYF7 251 aa6.44□□□□□ -1.38
DDX55-210ENST00000543016 WFDC13Q8IUB5 93 aa6.42□□□□□ -1.38
DDX55-210ENST00000543016 LCE1DQ5T752 114 aa6.41□□□□□ -1.38
DDX55-210ENST00000543016 LCE4AQ5TA78 99 aa6.41□□□□□ -1.38
DDX55-210ENST00000543016 ZCCHC13Q8WW36 166 aaKnown RBP6.41□□□□□ -1.38
DDX55-210ENST00000543016 NDUFS5O43920 106 aa6.39□□□□□ -1.39
DDX55-210ENST00000543016 KRTAP4-1Q9BYQ7 146 aa6.39□□□□□ -1.39
DDX55-210ENST00000543016 RNF213Q63HN8 5207 aa6.38□□□□□ -1.39
DDX55-210ENST00000543016 HIST1H4AP62805 103 aaKnown RBP6.38□□□□□ -1.39
DDX55-210ENST00000543016 KRTAP19-4Q3LI73 84 aa6.36□□□□□ -1.39
DDX55-210ENST00000543016 TP53AIP1Q9HCN2 124 aa6.36□□□□□ -1.39
DDX55-210ENST00000543016 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
DDX55-210ENST00000543016 IMUPQ9GZP8 106 aa6.32□□□□□ -1.4
DDX55-210ENST00000543016 MUC2Q02817 5179 aa6.32□□□□□ -1.4
DDX55-210ENST00000543016 KRTAP9-7A8MTY7 169 aa6.31□□□□□ -1.4
DDX55-210ENST00000543016 SPINK7P58062 85 aa6.29□□□□□ -1.4
DDX55-210ENST00000543016 A0A087WVE0 104 aa6.27□□□□□ -1.41
DDX55-210ENST00000543016 Q5W150 140 aa6.27□□□□□ -1.41
DDX55-210ENST00000543016 UQCRQO14949 82 aa6.25□□□□□ -1.41
DDX55-210ENST00000543016 C7orf65Q6ZTY9 151 aa6.24□□□□□ -1.41
DDX55-210ENST00000543016 RBM12B-AS1Q9P1G2 102 aa6.24□□□□□ -1.41
DDX55-210ENST00000543016 MT-ATP8P03928 68 aa6.23□□□□□ -1.41
DDX55-210ENST00000543016 HRES1P13985 223 aa6.23□□□□□ -1.41
DDX55-210ENST00000543016 COX6B2Q6YFQ2 88 aa6.23□□□□□ -1.41
DDX55-210ENST00000543016 KRTAP19-2Q3LHN2 52 aa6.22□□□□□ -1.41
DDX55-210ENST00000543016 MPLKIPQ8TAP9 179 aa6.22□□□□□ -1.41
DDX55-210ENST00000543016 KRTAP4-9Q9BYQ8 210 aa6.22□□□□□ -1.41
DDX55-210ENST00000543016 IGKV2D-30A0A075B6S6 120 aa6.21□□□□□ -1.42
DDX55-210ENST00000543016 TRAV22A0A0B4J277 110 aa6.21□□□□□ -1.42
DDX55-210ENST00000543016 IGKV2-30P06310 120 aa6.21□□□□□ -1.42
DDX55-210ENST00000543016 ATOX1O00244 68 aa6.2□□□□□ -1.42
DDX55-210ENST00000543016 SCGB1A1P11684 91 aa6.2□□□□□ -1.42
DDX55-210ENST00000543016 FAT4Q6V0I7 4981 aa6.19□□□□□ -1.42
DDX55-210ENST00000543016 OCR1Q9BZK8 76 aa6.18□□□□□ -1.42
DDX55-210ENST00000543016 FAM236DA0A1B0GTK5 79 aa6.17□□□□□ -1.42
DDX55-210ENST00000543016 LOC101927531A0A1B0GV80 90 aa6.17□□□□□ -1.42
DDX55-210ENST00000543016 FAM236CP0DP71 79 aa6.17□□□□□ -1.42
DDX55-210ENST00000543016 C5orf47Q569G3 176 aa6.15□□□□□ -1.42
DDX55-210ENST00000543016 SMIM20Q8N5G0 67 aa6.15□□□□□ -1.42
DDX55-210ENST00000543016 H0Y9P7 68 aa6.14□□□□□ -1.43
DDX55-210ENST00000543016 MP68P56378 58 aa6.14□□□□□ -1.43
DDX55-210ENST00000543016 FAM236AA0A1B0GUQ0 79 aa6.12□□□□□ -1.43
DDX55-210ENST00000543016 FAM236BA0A1B0GV22 79 aa6.12□□□□□ -1.43
DDX55-210ENST00000543016 H3BPC8 53 aa6.12□□□□□ -1.43
DDX55-210ENST00000543016 CYP4F30PQ9H0H9 118 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 268.6 ms