RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 ZCCHC13Q8WW36 166 aaKnown RBP8.62□□□□□ -1.03
ECHDC1-220ENST00000528402 IGHV6-1A0A0B4J1U7 121 aa8.61□□□□□ -1.03
ECHDC1-220ENST00000528402 C8orf87E5RJ46 101 aa8.61□□□□□ -1.03
ECHDC1-220ENST00000528402 C4orf48Q5BLP8 95 aa8.61□□□□□ -1.03
ECHDC1-220ENST00000528402 SACSQ9NZJ4 4579 aa8.6□□□□□ -1.03
ECHDC1-220ENST00000528402 MRPL34Q9BQ48 92 aaKnown RBP8.58□□□□□ -1.04
ECHDC1-220ENST00000528402 SPINK1P00995 79 aa8.57□□□□□ -1.04
ECHDC1-220ENST00000528402 TYMSOSQ8TAI1 123 aa8.57□□□□□ -1.04
ECHDC1-220ENST00000528402 SERP1Q9Y6X1 66 aa8.56□□□□□ -1.04
ECHDC1-220ENST00000528402 H0Y9P7 68 aa8.55□□□□□ -1.04
ECHDC1-220ENST00000528402 SPAG11AQ6PDA7 123 aa8.55□□□□□ -1.04
ECHDC1-220ENST00000528402 TRAV22A0A0B4J277 110 aa8.54□□□□□ -1.04
ECHDC1-220ENST00000528402 RPS29P62273 56 aaKnown RBP8.54□□□□□ -1.04
ECHDC1-220ENST00000528402 LRP1BQ9NZR2 4599 aa8.54□□□□□ -1.04
ECHDC1-220ENST00000528402 C1orf195Q5TG92 126 aa8.53□□□□□ -1.04
ECHDC1-220ENST00000528402 LINC00208Q96KT6 92 aa8.52□□□□□ -1.05
ECHDC1-220ENST00000528402 NDUFS5O43920 106 aa8.49□□□□□ -1.05
ECHDC1-220ENST00000528402 SMR3BP02814 79 aaPredicted RBP8.49□□□□□ -1.05
ECHDC1-220ENST00000528402 LINC00313P59037 77 aa8.49□□□□□ -1.05
ECHDC1-220ENST00000528402 C1orf64Q8NEQ6 169 aa8.49□□□□□ -1.05
ECHDC1-220ENST00000528402 RYR2Q92736 4967 aa8.48□□□□□ -1.05
ECHDC1-220ENST00000528402 LINC00304Q8N9R0 145 aa8.46□□□□□ -1.05
ECHDC1-220ENST00000528402 SPANXA2-OT1Q8N9U9 137 aa8.46□□□□□ -1.05
ECHDC1-220ENST00000528402 VPS13BQ7Z7G8 4022 aa8.46□□□□□ -1.05
ECHDC1-220ENST00000528402 KRTAP10-4P60372 401 aaPredicted RBP8.46□□□□□ -1.06
ECHDC1-220ENST00000528402 NOTCH2NLQ7Z3S9 236 aa8.46□□□□□ -1.06
ECHDC1-220ENST00000528402 DYNC1H1Q14204 4646 aaKnown RBP8.45□□□□□ -1.06
ECHDC1-220ENST00000528402 CYP4F30PQ9H0H9 118 aa8.45□□□□□ -1.06
ECHDC1-220ENST00000528402 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
ECHDC1-220ENST00000528402 FAM229AH3BQW9 127 aa8.42□□□□□ -1.06
ECHDC1-220ENST00000528402 Q8N9P0 234 aaPredicted RBP8.41□□□□□ -1.06
ECHDC1-220ENST00000528402 SMIM26A0A096LP01 95 aa8.39□□□□□ -1.07
ECHDC1-220ENST00000528402 LOC101927531A0A1B0GV80 90 aa8.39□□□□□ -1.07
ECHDC1-220ENST00000528402 OXTP01178 125 aa8.38□□□□□ -1.07
ECHDC1-220ENST00000528402 PKHD1P08F94 4074 aa8.36□□□□□ -1.07
ECHDC1-220ENST00000528402 IGLV7-46A0A075B6I9 117 aa8.35□□□□□ -1.07
ECHDC1-220ENST00000528402 KRTAP16-1A8MUX0 517 aa8.33□□□□□ -1.08
ECHDC1-220ENST00000528402 KRTAP13-3Q3SY46 172 aa8.33□□□□□ -1.08
ECHDC1-220ENST00000528402 APOBP04114 4563 aaKnown RBP8.32□□□□□ -1.08
ECHDC1-220ENST00000528402 Q5W150 140 aa8.29□□□□□ -1.08
ECHDC1-220ENST00000528402 PCOTHQ58A44 107 aa8.27□□□□□ -1.09
ECHDC1-220ENST00000528402 KMT2CQ8NEZ4 4911 aaKnown RBP8.26□□□□□ -1.09
ECHDC1-220ENST00000528402 PRR4Q16378 134 aa8.25□□□□□ -1.09
ECHDC1-220ENST00000528402 Q5VSD8 79 aa8.25□□□□□ -1.09
ECHDC1-220ENST00000528402 IGKV2-30P06310 120 aa8.22□□□□□ -1.09
ECHDC1-220ENST00000528402 KRTAP10-8P60410 259 aa8.21□□□□□ -1.09
ECHDC1-220ENST00000528402 FP248Q71RG6 208 aaPredicted RBP8.21□□□□□ -1.09
ECHDC1-220ENST00000528402 PKHD1L1Q86WI1 4243 aa8.2□□□□□ -1.1
ECHDC1-220ENST00000528402 LCE2AQ5TA79 106 aaPredicted RBP8.19□□□□□ -1.1
ECHDC1-220ENST00000528402 V9GYY9 64 aa8.19□□□□□ -1.1
ECHDC1-220ENST00000528402 FAT1Q14517 4588 aa8.17□□□□□ -1.1
ECHDC1-220ENST00000528402 Q1T7F1 81 aa8.16□□□□□ -1.1
ECHDC1-220ENST00000528402 C20orf166-AS1Q96NR2 134 aa8.15□□□□□ -1.1
ECHDC1-220ENST00000528402 A8MUU9 505 aa8.14□□□□□ -1.11
ECHDC1-220ENST00000528402 C4orf26Q17RF5 130 aa8.14□□□□□ -1.11
ECHDC1-220ENST00000528402 ACYP2P14621 99 aa8.13□□□□□ -1.11
ECHDC1-220ENST00000528402 COA5Q86WW8 74 aa8.13□□□□□ -1.11
ECHDC1-220ENST00000528402 HRES1P13985 223 aa8.12□□□□□ -1.11
ECHDC1-220ENST00000528402 Q8N1X5 172 aa8.12□□□□□ -1.11
ECHDC1-220ENST00000528402 RETNLBQ9BQ08 111 aa8.12□□□□□ -1.11
ECHDC1-220ENST00000528402 MPLKIPQ8TAP9 179 aa8.11□□□□□ -1.11
ECHDC1-220ENST00000528402 RYR1P21817 5038 aa8.1□□□□□ -1.11
ECHDC1-220ENST00000528402 C7orf65Q6ZTY9 151 aa8.09□□□□□ -1.11
ECHDC1-220ENST00000528402 DMAC1Q96GE9 116 aa8.08□□□□□ -1.12
ECHDC1-220ENST00000528402 IGKV2D-30A0A075B6S6 120 aa8.07□□□□□ -1.12
ECHDC1-220ENST00000528402 FLG2Q5D862 2391 aaPredicted RBP8.07□□□□□ -1.12
ECHDC1-220ENST00000528402 RYR3Q15413 4870 aa8.07□□□□□ -1.12
ECHDC1-220ENST00000528402 C9orf92A6NGG3 77 aa8.06□□□□□ -1.12
ECHDC1-220ENST00000528402 Q75L30 129 aa8.05□□□□□ -1.12
ECHDC1-220ENST00000528402 J3QL48 77 aa8.04□□□□□ -1.12
ECHDC1-220ENST00000528402 LOC100996750A0A140TA64 210 aa8.03□□□□□ -1.12
ECHDC1-220ENST00000528402 KRTAP4-6Q9BYQ5 205 aa8.03□□□□□ -1.12
ECHDC1-220ENST00000528402 HSPG2P98160 4391 aa8.02□□□□□ -1.13
ECHDC1-220ENST00000528402 A8MUN3 132 aa7.99□□□□□ -1.13
ECHDC1-220ENST00000528402 CHKB-CPT1BH3BT56 60 aa7.97□□□□□ -1.13
ECHDC1-220ENST00000528402 LINC01558Q9Y6Z2 57 aa7.96□□□□□ -1.13
ECHDC1-220ENST00000528402 MT1HL1P0DM35 61 aa7.95□□□□□ -1.14
ECHDC1-220ENST00000528402 KRTAP17-1Q9BYP8 105 aa7.95□□□□□ -1.14
ECHDC1-220ENST00000528402 TNXBP22105 4242 aa7.94□□□□□ -1.14
ECHDC1-220ENST00000528402 ATP11AUNQ6ZP68 121 aa7.93□□□□□ -1.14
ECHDC1-220ENST00000528402 PSPHP1O15172 72 aa7.9□□□□□ -1.14
ECHDC1-220ENST00000528402 SPINK7P58062 85 aa7.9□□□□□ -1.14
ECHDC1-220ENST00000528402 KIAA1109Q2LD37 5005 aa7.89□□□□□ -1.15
ECHDC1-220ENST00000528402 FAT3Q8TDW7 4589 aa7.89□□□□□ -1.15
ECHDC1-220ENST00000528402 RPL37P61927 97 aaKnown RBP7.88□□□□□ -1.15
ECHDC1-220ENST00000528402 DMBT1Q9UGM3 2413 aaPredicted RBP7.87□□□□□ -1.15
ECHDC1-220ENST00000528402 PRR15LQ9BU68 103 aa7.87□□□□□ -1.15
ECHDC1-220ENST00000528402 Q5VV11 94 aa7.86□□□□□ -1.15
ECHDC1-220ENST00000528402 LRP1Q07954 4544 aaKnown RBP7.86□□□□□ -1.15
ECHDC1-220ENST00000528402 XP32Q5T750 250 aa7.84□□□□□ -1.15
ECHDC1-220ENST00000528402 SPTSSBQ8NFR3 76 aa7.84□□□□□ -1.15
ECHDC1-220ENST00000528402 SVIPQ8NHG7 77 aa7.84□□□□□ -1.15
ECHDC1-220ENST00000528402 PRO0628Q9UI54 55 aa7.84□□□□□ -1.15
ECHDC1-220ENST00000528402 LCE2CQ5TA81 110 aa7.83□□□□□ -1.16
ECHDC1-220ENST00000528402 BRK1Q8WUW1 75 aa7.81□□□□□ -1.16
ECHDC1-220ENST00000528402 EPPK1P58107 5090 aaKnown RBP7.79□□□□□ -1.16
ECHDC1-220ENST00000528402 TPRXLQ17RH7 258 aa7.78□□□□□ -1.16
ECHDC1-220ENST00000528402 COX6B2Q6YFQ2 88 aa7.78□□□□□ -1.16
ECHDC1-220ENST00000528402 A0A1B0GU69 56 aa7.73□□□□□ -1.17
ECHDC1-220ENST00000528402 A6NED7 52 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms