RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 XP32Q5T750 250 aa5.55□□□□□ -1.52
VPS28-204ENST00000526054 LINC00846Q9NV44 126 aa5.55□□□□□ -1.52
VPS28-204ENST00000526054 UBL5Q9BZL1 73 aa5.54□□□□□ -1.52
VPS28-204ENST00000526054 NREPQ16612 68 aa5.52□□□□□ -1.53
VPS28-204ENST00000526054 Q96NJ1 140 aa5.52□□□□□ -1.53
VPS28-204ENST00000526054 SIGMAR1Q99720 223 aa5.52□□□□□ -1.53
VPS28-204ENST00000526054 LCE2DQ5TA82 110 aaPredicted RBP5.51□□□□□ -1.53
VPS28-204ENST00000526054 Q6ZVQ6 151 aa5.51□□□□□ -1.53
VPS28-204ENST00000526054 FSIP2Q5CZC0 6907 aa5.51□□□□□ -1.53
VPS28-204ENST00000526054 IGKV4-1P06312 121 aa5.5□□□□□ -1.53
VPS28-204ENST00000526054 LINC00643Q86TS7 51 aa5.49□□□□□ -1.53
VPS28-204ENST00000526054 LINC00472Q9H8W2 130 aa5.49□□□□□ -1.53
VPS28-204ENST00000526054 ATP5EP2Q5VTU8 51 aa5.48□□□□□ -1.53
VPS28-204ENST00000526054 J3KT08 172 aa5.46□□□□□ -1.54
VPS28-204ENST00000526054 BPY2O14599 106 aa5.46□□□□□ -1.54
VPS28-204ENST00000526054 DEFB116Q30KQ4 102 aa5.46□□□□□ -1.54
VPS28-204ENST00000526054 PCOTHQ58A44 107 aa5.46□□□□□ -1.54
VPS28-204ENST00000526054 LCE2CQ5TA81 110 aa5.46□□□□□ -1.54
VPS28-204ENST00000526054 RPL37P61927 97 aaKnown RBP5.45□□□□□ -1.54
VPS28-204ENST00000526054 CXCL6P80162 114 aa5.45□□□□□ -1.54
VPS28-204ENST00000526054 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
VPS28-204ENST00000526054 KRTAP19-2Q3LHN2 52 aa5.44□□□□□ -1.54
VPS28-204ENST00000526054 IGKV3D-7A0A0C4DH55 119 aa5.43□□□□□ -1.54
VPS28-204ENST00000526054 DSCR10P59022 87 aa5.43□□□□□ -1.54
VPS28-204ENST00000526054 MT1HP80294 61 aa5.43□□□□□ -1.54
VPS28-204ENST00000526054 IGHV6-1A0A0B4J1U7 121 aa5.42□□□□□ -1.54
VPS28-204ENST00000526054 A0A1B0GVX0 72 aa5.42□□□□□ -1.54
VPS28-204ENST00000526054 NDUFB1O75438 58 aa5.42□□□□□ -1.54
VPS28-204ENST00000526054 LINC00313P59037 77 aa5.42□□□□□ -1.54
VPS28-204ENST00000526054 Q75L30 129 aa5.42□□□□□ -1.54
VPS28-204ENST00000526054 C8orf87E5RJ46 101 aa5.41□□□□□ -1.54
VPS28-204ENST00000526054 MT-ATP8P03928 68 aa5.4□□□□□ -1.54
VPS28-204ENST00000526054 A8MWP4 228 aa5.39□□□□□ -1.55
VPS28-204ENST00000526054 ATP11AUNQ6ZP68 121 aa5.39□□□□□ -1.55
VPS28-204ENST00000526054 C20orf166-AS1Q96NR2 134 aa5.39□□□□□ -1.55
VPS28-204ENST00000526054 IMUPQ9GZP8 106 aa5.39□□□□□ -1.55
VPS28-204ENST00000526054 A8MUU9 505 aa5.38□□□□□ -1.55
VPS28-204ENST00000526054 HIST1H4AP62805 103 aaKnown RBP5.38□□□□□ -1.55
VPS28-204ENST00000526054 K7EQZ3 153 aa5.37□□□□□ -1.55
VPS28-204ENST00000526054 NOTCH2NLQ7Z3S9 236 aa5.37□□□□□ -1.55
VPS28-204ENST00000526054 Q8N9L7 120 aa5.37□□□□□ -1.55
VPS28-204ENST00000526054 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
VPS28-204ENST00000526054 KRTAP16-1A8MUX0 517 aa5.36□□□□□ -1.55
VPS28-204ENST00000526054 PRR15Q8IV56 129 aa5.36□□□□□ -1.55
VPS28-204ENST00000526054 LORP23490 312 aaPredicted RBP5.35□□□□□ -1.55
VPS28-204ENST00000526054 KRTAP10-6P60371 365 aaPredicted RBP5.35□□□□□ -1.55
VPS28-204ENST00000526054 COX6B2Q6YFQ2 88 aa5.35□□□□□ -1.55
VPS28-204ENST00000526054 M0R2T5 61 aa5.34□□□□□ -1.55
VPS28-204ENST00000526054 C8orf17Q9NRJ1 99 aa5.34□□□□□ -1.55
VPS28-204ENST00000526054 A0A087WVE0 104 aa5.32□□□□□ -1.56
VPS28-204ENST00000526054 HCG22E2RYF7 251 aa5.31□□□□□ -1.56
VPS28-204ENST00000526054 MMP24-AS1A0A0U1RRL7 71 aa5.29□□□□□ -1.56
VPS28-204ENST00000526054 CASC2Q6XLA1 102 aa5.29□□□□□ -1.56
VPS28-204ENST00000526054 TMEM254Q8TBM7 123 aa5.29□□□□□ -1.56
VPS28-204ENST00000526054 FAM236AA0A1B0GUQ0 79 aa5.28□□□□□ -1.56
VPS28-204ENST00000526054 FAM236BA0A1B0GV22 79 aa5.28□□□□□ -1.56
VPS28-204ENST00000526054 WFDC13Q8IUB5 93 aa5.28□□□□□ -1.56
VPS28-204ENST00000526054 Q8N9P0 234 aaPredicted RBP5.28□□□□□ -1.56
VPS28-204ENST00000526054 SVIPQ8NHG7 77 aa5.28□□□□□ -1.56
VPS28-204ENST00000526054 hDV103S1A0JD37 113 aa5.27□□□□□ -1.57
VPS28-204ENST00000526054 MRPL34Q9BQ48 92 aaKnown RBP5.27□□□□□ -1.57
VPS28-204ENST00000526054 SCGB1A1P11684 91 aa5.26□□□□□ -1.57
VPS28-204ENST00000526054 ZCCHC13Q8WW36 166 aaKnown RBP5.25□□□□□ -1.57
VPS28-204ENST00000526054 ATOX1O00244 68 aa5.23□□□□□ -1.57
VPS28-204ENST00000526054 NDUFS5O43920 106 aa5.23□□□□□ -1.57
VPS28-204ENST00000526054 SMIM20Q8N5G0 67 aa5.22□□□□□ -1.57
VPS28-204ENST00000526054 TP53AIP1Q9HCN2 124 aa5.19□□□□□ -1.58
VPS28-204ENST00000526054 UQCRQO14949 82 aa5.17□□□□□ -1.58
VPS28-204ENST00000526054 OCR1Q9BZK8 76 aa5.17□□□□□ -1.58
VPS28-204ENST00000526054 TRAV7A0A075B6U4 112 aa5.16□□□□□ -1.58
VPS28-204ENST00000526054 SPINK7P58062 85 aa5.16□□□□□ -1.58
VPS28-204ENST00000526054 ANAPC13Q9BS18 74 aa5.16□□□□□ -1.58
VPS28-204ENST00000526054 SSPOA2VEC9 5147 aa5.15□□□□□ -1.58
VPS28-204ENST00000526054 PCP4P48539 62 aa5.15□□□□□ -1.59
VPS28-204ENST00000526054 SERP2Q8N6R1 65 aa5.15□□□□□ -1.59
VPS28-204ENST00000526054 RBM12B-AS1Q9P1G2 102 aa5.15□□□□□ -1.59
VPS28-204ENST00000526054 FAM236DA0A1B0GTK5 79 aa5.14□□□□□ -1.59
VPS28-204ENST00000526054 FAM236CP0DP71 79 aa5.14□□□□□ -1.59
VPS28-204ENST00000526054 HRES1P13985 223 aa5.14□□□□□ -1.59
VPS28-204ENST00000526054 USH2AO75445 5202 aa5.13□□□□□ -1.59
VPS28-204ENST00000526054 TRAV22A0A0B4J277 110 aa5.12□□□□□ -1.59
VPS28-204ENST00000526054 MP68P56378 58 aa5.11□□□□□ -1.59
VPS28-204ENST00000526054 C5orf47Q569G3 176 aa5.11□□□□□ -1.59
VPS28-204ENST00000526054 Q5W150 140 aa5.11□□□□□ -1.59
VPS28-204ENST00000526054 H0Y9P7 68 aa5.1□□□□□ -1.59
VPS28-204ENST00000526054 COX7CP15954 63 aa5.1□□□□□ -1.59
VPS28-204ENST00000526054 C7orf65Q6ZTY9 151 aa5.1□□□□□ -1.59
VPS28-204ENST00000526054 MPLKIPQ8TAP9 179 aa5.1□□□□□ -1.59
VPS28-204ENST00000526054 IGKV2D-30A0A075B6S6 120 aa5.09□□□□□ -1.59
VPS28-204ENST00000526054 IGKV2-30P06310 120 aa5.09□□□□□ -1.59
VPS28-204ENST00000526054 KRTAP9-8Q9BYQ0 159 aa5.09□□□□□ -1.59
VPS28-204ENST00000526054 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.08□□□□□ -1.6
VPS28-204ENST00000526054 KRTAP9-7A8MTY7 169 aa5.07□□□□□ -1.6
VPS28-204ENST00000526054 H3BPC8 53 aa5.07□□□□□ -1.6
VPS28-204ENST00000526054 LOC101927531A0A1B0GV80 90 aa5.05□□□□□ -1.6
VPS28-204ENST00000526054 C20orf197Q8N268 126 aa5.05□□□□□ -1.6
VPS28-204ENST00000526054 C1orf64Q8NEQ6 169 aa5.05□□□□□ -1.6
VPS28-204ENST00000526054 LINC00208Q96KT6 92 aa5.05□□□□□ -1.6
VPS28-204ENST00000526054 FCGBPQ9Y6R7 5405 aaPredicted RBP5.04□□□□□ -1.6
VPS28-204ENST00000526054 MT2AP02795 61 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms