RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	S100A7L2	Q5SY68	101 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922	KRTAP19-3	Q7Z4W3	81 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922	MIR7-3HG	Q8N6C7	128 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922	FAM213B	Q8TBF2	198 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922	SCGB3A1	Q96QR1	104 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922	NAA38	Q9BRA0	125 aa	Known RBP	0.56	□□□□□ -2.32
CD44-212	ENST00000524922	GNG13	Q9P2W3	67 aa		0.56	□□□□□ -2.32
CD44-212	ENST00000524922		A0A087WSZ3	146 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	TRBV7-4	A0A0J9YYF1	115 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	KANTR	A0A1W2PQU2	76 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	SMKR1	H3BMG3	65 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	SMLR1	H3BR10	107 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922		J3KT08	172 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	SPINK8	P0C7L1	97 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	MT1G	P13640	62 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	TAL2	Q16559	108 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	CSAG1	Q6PB30	78 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	0.55	□□□□□ -2.32
CD44-212	ENST00000524922	HIST1H4G	Q99525	98 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	SMIM7	Q9BQ49	75 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	IMUP	Q9GZP8	106 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	NAT8	Q9UHE5	227 aa		0.55	□□□□□ -2.32
CD44-212	ENST00000524922	LOC389332	A0A1B0GUA5	103 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922		A0A1B0GX51	115 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	NCR3	O14931	201 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	LEPROT	O15243	131 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	SMIM13	P0DJ93	91 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	IFITM1	P13164	125 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	PLN	P26678	52 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	KRTAP20-2	Q3LI61	65 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	HRCT1	Q6UXD1	115 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	C2orf91	Q6ZV80	131 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	SLC51B	Q86UW2	128 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	CYSTM1	Q9H1C7	97 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	LINC00472	Q9H8W2	130 aa		0.54	□□□□□ -2.32
CD44-212	ENST00000524922	IGKV3D-7	A0A0C4DH55	119 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	FAM236A	A0A1B0GUQ0	79 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	FAM236B	A0A1B0GV22	79 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	ARPC5	O15511	151 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	MT1E	P04732	61 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	VAMP3	Q15836	100 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	TMEM170B	Q5T4T1	132 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	C7orf65	Q6ZTY9	151 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	SLC7A5P1	Q8MH63	180 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922	C20orf197	Q8N268	126 aa		0.53	□□□□□ -2.32
CD44-212	ENST00000524922		A0A1B0GVX0	72 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922		A8MUN3	132 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922		J3QQQ9	107 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	SNCG	O76070	127 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	SRP19	P09132	144 aa	Known RBP	0.52	□□□□□ -2.33
CD44-212	ENST00000524922		P0C880	135 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	ADCYAP1	P18509	176 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	MT4	P47944	62 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	RBM3	P98179	157 aa	Known RBP	0.52	□□□□□ -2.33
CD44-212	ENST00000524922	KRTAP19-7	Q3SYF9	63 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	BVES-AS1	Q5T3Y7	98 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	LINC01545	Q5VT33	79 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	UQCC3	Q6UW78	93 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	LINC00575	Q6W349	94 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	LINC00308	Q8TCZ7	52 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	PLAC4	Q8WY50	150 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	CHCHD1	Q96BP2	118 aa	Known RBP	0.52	□□□□□ -2.33
CD44-212	ENST00000524922	YPEL4	Q96NS1	127 aa		0.52	□□□□□ -2.33
CD44-212	ENST00000524922	hADV29S1	A0JD25	119 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	MT-ND4L	P03901	98 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	TRGC2	P03986	189 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	LINC00614	P0C842	121 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	PDE6G	P18545	87 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	NPC2	P61916	151 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	IFITM3	Q01628	133 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922		Q6ZQY7	126 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	C12orf57	Q99622	126 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	SEC11C	Q9BY50	192 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922	SMCO4	Q9NRQ5	59 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922		S4R3F8	94 aa		0.51	□□□□□ -2.33
CD44-212	ENST00000524922		H0YGX0	51 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	NDUFB1	O75438	58 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	PEA15	Q15121	130 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	ADIRF	Q15847	76 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	C4orf26	Q17RF5	130 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	LCA10	Q71F78	164 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	MT1M	Q8N339	61 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	TMEM254	Q8TBM7	123 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	SIGMAR1	Q99720	223 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922	SNHG12	Q9BXW3	62 aa		0.5	□□□□□ -2.33
CD44-212	ENST00000524922		A0A1B0GV50	99 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	DPM2	O94777	84 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	TSPEAR-AS2	P59090	65 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	DEFB105A	Q8NG35	78 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	OR13C6P	Q8NH95	151 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	C18orf32	Q8TCD1	76 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	IFI27L1	Q96BM0	104 aa		0.49	□□□□□ -2.33
CD44-212	ENST00000524922	IGHV6-1	A0A0B4J1U7	121 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	hDV103S1	A0JD37	113 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	LEPROTL1	O95214	131 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	IGKC	P01834	107 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	S100P	P25815	95 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	RGS21	Q2M5E4	152 aa		0.48	□□□□□ -2.33
CD44-212	ENST00000524922	COA6	Q5JTJ3	125 aa	Known RBP	0.48	□□□□□ -2.33
CD44-212	ENST00000524922	SMIM11B	Q8TCY0	68 aa		0.48	□□□□□ -2.33

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms