RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 C20orf78Q9BR46 151 aa-6.36□□□□□ -3.43
RNU6-539P-201ENST00000516665 C6orf48Q9UBA6 75 aa-6.36□□□□□ -3.43
RNU6-539P-201ENST00000516665 MPC2O95563 127 aa-6.37□□□□□ -3.43
RNU6-539P-201ENST00000516665 ACBD7Q8N6N7 88 aa-6.37□□□□□ -3.43
RNU6-539P-201ENST00000516665 EEA1Q15075 1411 aa-6.37□□□□□ -3.43
RNU6-539P-201ENST00000516665 CKS1BP61024 79 aa-6.38□□□□□ -3.43
RNU6-539P-201ENST00000516665 TJP1Q07157 1748 aa-6.39□□□□□ -3.43
RNU6-539P-201ENST00000516665 KRTAP19-2Q3LHN2 52 aa-6.39□□□□□ -3.43
RNU6-539P-201ENST00000516665 NEXMIFQ5QGS0 1516 aa-6.4□□□□□ -3.43
RNU6-539P-201ENST00000516665 GNG10P50151 68 aa-6.4□□□□□ -3.43
RNU6-539P-201ENST00000516665 PFDN5Q99471 154 aa-6.4□□□□□ -3.43
RNU6-539P-201ENST00000516665 NRAPQ86VF7 1730 aa-6.4□□□□□ -3.43
RNU6-539P-201ENST00000516665 ARHGAP5Q13017 1502 aa-6.4□□□□□ -3.43
RNU6-539P-201ENST00000516665 MYOM2P54296 1465 aa-6.41□□□□□ -3.43
RNU6-539P-201ENST00000516665 NDUFA4O00483 81 aa-6.41□□□□□ -3.44
RNU6-539P-201ENST00000516665 FOCADQ5VW36 1801 aa-6.41□□□□□ -3.44
RNU6-539P-201ENST00000516665 PLGLAQ15195 96 aa-6.42□□□□□ -3.44
RNU6-539P-201ENST00000516665 SPANXA1Q9NS26 97 aa-6.42□□□□□ -3.44
RNU6-539P-201ENST00000516665 PAIP2BQ9ULR5 123 aaKnown RBP-6.42□□□□□ -3.44
RNU6-539P-201ENST00000516665 KIF14Q15058 1648 aa-6.43□□□□□ -3.44
RNU6-539P-201ENST00000516665 KTN1Q86UP2 1357 aaKnown RBP-6.43□□□□□ -3.44
RNU6-539P-201ENST00000516665 ARPC4P59998 168 aa-6.43□□□□□ -3.44
RNU6-539P-201ENST00000516665 CENPHQ9H3R5 247 aa-6.43□□□□□ -3.44
RNU6-539P-201ENST00000516665 CYB5AP00167 134 aa-6.44□□□□□ -3.44
RNU6-539P-201ENST00000516665 RICTORQ6R327 1708 aa-6.45□□□□□ -3.44
RNU6-539P-201ENST00000516665 PREX2Q70Z35 1606 aa-6.45□□□□□ -3.44
RNU6-539P-201ENST00000516665 NBEAP1P0C6P0 100 aa-6.45□□□□□ -3.44
RNU6-539P-201ENST00000516665 RPL13AP3Q6NVV1 102 aa-6.45□□□□□ -3.44
RNU6-539P-201ENST00000516665 ZNF720Q7Z2F6 126 aa-6.45□□□□□ -3.44
RNU6-539P-201ENST00000516665 E5RI56 91 aa-6.46□□□□□ -3.44
RNU6-539P-201ENST00000516665 ARFGEF2Q9Y6D5 1785 aa-6.46□□□□□ -3.44
RNU6-539P-201ENST00000516665 ROCK2O75116 1388 aaKnown RBP-6.47□□□□□ -3.45
RNU6-539P-201ENST00000516665 H3BQ15 152 aa-6.48□□□□□ -3.45
RNU6-539P-201ENST00000516665 MRPL33O75394 65 aaKnown RBP-6.48□□□□□ -3.45
RNU6-539P-201ENST00000516665 IFI27P40305 119 aaPredicted RBP-6.48□□□□□ -3.45
RNU6-539P-201ENST00000516665 CHMP6Q96FZ7 201 aa-6.49□□□□□ -3.45
RNU6-539P-201ENST00000516665 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-6.5□□□□□ -3.45
RNU6-539P-201ENST00000516665 CLASP1Q7Z460 1538 aa-6.5□□□□□ -3.45
RNU6-539P-201ENST00000516665 CDH23Q9H251 3354 aa-6.52□□□□□ -3.45
RNU6-539P-201ENST00000516665 LZICQ8WZA0 190 aa-6.52□□□□□ -3.45
RNU6-539P-201ENST00000516665 RNF17Q9BXT8 1623 aaKnown RBP-6.52□□□□□ -3.45
RNU6-539P-201ENST00000516665 NDUFB1O75438 58 aa-6.53□□□□□ -3.45
RNU6-539P-201ENST00000516665 INO80Q9ULG1 1556 aaPredicted RBP-6.53□□□□□ -3.46
RNU6-539P-201ENST00000516665 ABCA3Q99758 1704 aa-6.55□□□□□ -3.46
RNU6-539P-201ENST00000516665 FAM208AQ9UK61 1670 aaKnown RBP-6.55□□□□□ -3.46
RNU6-539P-201ENST00000516665 FAM25AB3EWG3 89 aa-6.56□□□□□ -3.46
RNU6-539P-201ENST00000516665 FAM25CB3EWG5 89 aa-6.56□□□□□ -3.46
RNU6-539P-201ENST00000516665 FAM25GB3EWG6 89 aa-6.56□□□□□ -3.46
RNU6-539P-201ENST00000516665 CCDC88BA6NC98 1476 aa-6.59□□□□□ -3.46
RNU6-539P-201ENST00000516665 FABP1P07148 127 aa-6.59□□□□□ -3.46
RNU6-539P-201ENST00000516665 UMAD1C9J7I0 102 aa-6.6□□□□□ -3.47
RNU6-539P-201ENST00000516665 LINC00032P0C843 101 aa-6.6□□□□□ -3.47
RNU6-539P-201ENST00000516665 NAIPQ13075 1403 aa-6.6□□□□□ -3.47
RNU6-539P-201ENST00000516665 BRCA2P51587 3418 aa-6.61□□□□□ -3.47
RNU6-539P-201ENST00000516665 KCNQ1DNQ9H478 68 aa-6.61□□□□□ -3.47
RNU6-539P-201ENST00000516665 KAAG1Q9UBP8 84 aa-6.61□□□□□ -3.47
RNU6-539P-201ENST00000516665 C20orf202A1L168 122 aa-6.62□□□□□ -3.47
RNU6-539P-201ENST00000516665 GNG7O60262 68 aa-6.62□□□□□ -3.47
RNU6-539P-201ENST00000516665 MYO5CQ9NQX4 1742 aa-6.62□□□□□ -3.47
RNU6-539P-201ENST00000516665 HMGN2P05204 90 aaKnown RBP-6.63□□□□□ -3.47
RNU6-539P-201ENST00000516665 LINC00470Q9BZP3 86 aa-6.63□□□□□ -3.47
RNU6-539P-201ENST00000516665 ARHGAP35Q9NRY4 1499 aa-6.64□□□□□ -3.47
RNU6-539P-201ENST00000516665 GNGT2O14610 69 aa-6.64□□□□□ -3.47
RNU6-539P-201ENST00000516665 AKAIN1P0CW23 69 aa-6.64□□□□□ -3.47
RNU6-539P-201ENST00000516665 SMIM15Q7Z3B0 74 aa-6.64□□□□□ -3.47
RNU6-539P-201ENST00000516665 SVBPQ8N300 66 aa-6.64□□□□□ -3.47
RNU6-539P-201ENST00000516665 S100A8P05109 93 aa-6.65□□□□□ -3.47
RNU6-539P-201ENST00000516665 CLTCQ00610 1675 aaKnown RBP-6.65□□□□□ -3.47
RNU6-539P-201ENST00000516665 PTMSP20962 102 aa-6.67□□□□□ -3.48
RNU6-539P-201ENST00000516665 POLR2KP53803 58 aaKnown RBP-6.67□□□□□ -3.48
RNU6-539P-201ENST00000516665 UACAQ9BZF9 1416 aa-6.67□□□□□ -3.48
RNU6-539P-201ENST00000516665 SELENOWP63302 87 aa-6.68□□□□□ -3.48
RNU6-539P-201ENST00000516665 UNC13AQ9UPW8 1703 aa-6.69□□□□□ -3.48
RNU6-539P-201ENST00000516665 UBL5Q9BZL1 73 aa-6.69□□□□□ -3.48
RNU6-539P-201ENST00000516665 UQCRHLA0A096LP55 91 aa-6.7□□□□□ -3.48
RNU6-539P-201ENST00000516665 XIRP2A4UGR9 3374 aa-6.7□□□□□ -3.48
RNU6-539P-201ENST00000516665 NRXN3Q9Y4C0 1643 aa-6.71□□□□□ -3.48
RNU6-539P-201ENST00000516665 DPY30Q9C005 99 aa-6.71□□□□□ -3.48
RNU6-539P-201ENST00000516665 HFM1A2PYH4 1435 aa-6.71□□□□□ -3.48
RNU6-539P-201ENST00000516665 NRKQ7Z2Y5 1582 aa-6.72□□□□□ -3.49
RNU6-539P-201ENST00000516665 GNG14A0A1W2PPG7 69 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 NREPQ16612 68 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 PYDC1Q8WXC3 89 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 PMCHL2Q9BQD1 86 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 ABRACLQ9P1F3 81 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 IER3IP1Q9Y5U9 82 aa-6.73□□□□□ -3.49
RNU6-539P-201ENST00000516665 ATOX1O00244 68 aa-6.74□□□□□ -3.49
RNU6-539P-201ENST00000516665 SNAPC5O75971 98 aa-6.74□□□□□ -3.49
RNU6-539P-201ENST00000516665 EPRSP07814 1512 aaKnown RBP-6.75□□□□□ -3.49
RNU6-539P-201ENST00000516665 URB2Q14146 1524 aaKnown RBP-6.75□□□□□ -3.49
RNU6-539P-201ENST00000516665 FAM107BQ9H098 131 aa-6.75□□□□□ -3.49
RNU6-539P-201ENST00000516665 FANCAO15360 1455 aa-6.75□□□□□ -3.49
RNU6-539P-201ENST00000516665 VPS13AQ96RL7 3174 aa-6.76□□□□□ -3.49
RNU6-539P-201ENST00000516665 ANKRD26Q9UPS8 1709 aa-6.79□□□□□ -3.5
RNU6-539P-201ENST00000516665 MYMXA0A1B0GTQ4 84 aa-6.79□□□□□ -3.5
RNU6-539P-201ENST00000516665 COL5A1-AS1Q5SY13 56 aa-6.79□□□□□ -3.5
RNU6-539P-201ENST00000516665 NHSQ6T4R5 1651 aa-6.8□□□□□ -3.5
RNU6-539P-201ENST00000516665 ETDCA0A1B0GVM5 59 aa-6.8□□□□□ -3.5
RNU6-539P-201ENST00000516665 CFAP43Q8NDM7 1665 aa-6.83□□□□□ -3.5
RNU6-539P-201ENST00000516665 PZPP20742 1482 aa-6.83□□□□□ -3.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms