RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 CASC2Q6XLA1 102 aa4.87□□□□□ -1.63
SF3A1-210ENST00000498259 TRAV7A0A075B6U4 112 aa4.86□□□□□ -1.63
SF3A1-210ENST00000498259 IGHV6-1A0A0B4J1U7 121 aa4.86□□□□□ -1.63
SF3A1-210ENST00000498259 C1orf195Q5TG92 126 aa4.86□□□□□ -1.63
SF3A1-210ENST00000498259 SERP2Q8N6R1 65 aa4.86□□□□□ -1.63
SF3A1-210ENST00000498259 hDV103S1A0JD37 113 aa4.85□□□□□ -1.63
SF3A1-210ENST00000498259 TP53AIP1Q9HCN2 124 aa4.85□□□□□ -1.63
SF3A1-210ENST00000498259 APOBP04114 4563 aaKnown RBP4.85□□□□□ -1.63
SF3A1-210ENST00000498259 UQCRQO14949 82 aa4.84□□□□□ -1.63
SF3A1-210ENST00000498259 LINC00313P59037 77 aa4.84□□□□□ -1.63
SF3A1-210ENST00000498259 KRTAP10-8P60410 259 aa4.84□□□□□ -1.63
SF3A1-210ENST00000498259 C8orf17Q9NRJ1 99 aa4.84□□□□□ -1.63
SF3A1-210ENST00000498259 COX7CP15954 63 aa4.83□□□□□ -1.64
SF3A1-210ENST00000498259 WFDC13Q8IUB5 93 aa4.83□□□□□ -1.64
SF3A1-210ENST00000498259 C5orf47Q569G3 176 aa4.82□□□□□ -1.64
SF3A1-210ENST00000498259 TMEM254Q8TBM7 123 aa4.82□□□□□ -1.64
SF3A1-210ENST00000498259 MMP24-AS1A0A0U1RRL7 71 aa4.81□□□□□ -1.64
SF3A1-210ENST00000498259 FP248Q71RG6 208 aaPredicted RBP4.81□□□□□ -1.64
SF3A1-210ENST00000498259 MRPL34Q9BQ48 92 aaKnown RBP4.81□□□□□ -1.64
SF3A1-210ENST00000498259 KRTAP29-1A8MX34 341 aaPredicted RBP4.8□□□□□ -1.64
SF3A1-210ENST00000498259 MP68P56378 58 aa4.8□□□□□ -1.64
SF3A1-210ENST00000498259 KRTAP4-8Q9BYQ9 185 aa4.8□□□□□ -1.64
SF3A1-210ENST00000498259 NDUFS5O43920 106 aa4.79□□□□□ -1.64
SF3A1-210ENST00000498259 OCR1Q9BZK8 76 aa4.79□□□□□ -1.64
SF3A1-210ENST00000498259 H3BPC8 53 aa4.78□□□□□ -1.64
SF3A1-210ENST00000498259 XP32Q5T750 250 aa4.78□□□□□ -1.64
SF3A1-210ENST00000498259 HSPG2P98160 4391 aa4.77□□□□□ -1.65
SF3A1-210ENST00000498259 NDUFC1O43677 76 aa4.77□□□□□ -1.65
SF3A1-210ENST00000498259 RYR1P21817 5038 aa4.76□□□□□ -1.65
SF3A1-210ENST00000498259 FAT1Q14517 4588 aa4.75□□□□□ -1.65
SF3A1-210ENST00000498259 TRAV22A0A0B4J277 110 aa4.74□□□□□ -1.65
SF3A1-210ENST00000498259 PKHD1L1Q86WI1 4243 aa4.73□□□□□ -1.65
SF3A1-210ENST00000498259 KLKP1Q107X0 134 aa4.73□□□□□ -1.65
SF3A1-210ENST00000498259 C20orf197Q8N268 126 aa4.73□□□□□ -1.65
SF3A1-210ENST00000498259 Q8N9P0 234 aaPredicted RBP4.73□□□□□ -1.65
SF3A1-210ENST00000498259 MT1HL1P0DM35 61 aa4.72□□□□□ -1.65
SF3A1-210ENST00000498259 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.71□□□□□ -1.66
SF3A1-210ENST00000498259 H0Y9P7 68 aa4.71□□□□□ -1.66
SF3A1-210ENST00000498259 CCDC179H3BU77 68 aa4.71□□□□□ -1.66
SF3A1-210ENST00000498259 NOTCH2NLQ7Z3S9 236 aa4.71□□□□□ -1.66
SF3A1-210ENST00000498259 KIAA1109Q2LD37 5005 aa4.71□□□□□ -1.66
SF3A1-210ENST00000498259 EPPK1P58107 5090 aaKnown RBP4.7□□□□□ -1.66
SF3A1-210ENST00000498259 IGLV7-46A0A075B6I9 117 aa4.7□□□□□ -1.66
SF3A1-210ENST00000498259 RETNLBQ9BQ08 111 aa4.7□□□□□ -1.66
SF3A1-210ENST00000498259 KRTAP9-2Q9BYQ4 174 aa4.7□□□□□ -1.66
SF3A1-210ENST00000498259 KRTAP17-1Q9BYP8 105 aa4.69□□□□□ -1.66
SF3A1-210ENST00000498259 A0A0U1RQV1 116 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 LOC101927531A0A1B0GV80 90 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 KRTAP16-1A8MUX0 517 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 PRR4Q16378 134 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 C1orf64Q8NEQ6 169 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 LINC00208Q96KT6 92 aa4.68□□□□□ -1.66
SF3A1-210ENST00000498259 KRTAP9-6A0A140TA67 174 aa4.67□□□□□ -1.66
SF3A1-210ENST00000498259 C9orf92A6NGG3 77 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 ATP5EP56381 51 aaPredicted RBP4.66□□□□□ -1.66
SF3A1-210ENST00000498259 TMEM258P61165 79 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 Q75L30 129 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 C20orf166-AS1Q96NR2 134 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 KRTAP4-5Q9BYR2 181 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 SNURFQ9Y675 71 aa4.66□□□□□ -1.66
SF3A1-210ENST00000498259 A8MUU9 505 aa4.65□□□□□ -1.67
SF3A1-210ENST00000498259 FLG2Q5D862 2391 aaPredicted RBP4.65□□□□□ -1.67
SF3A1-210ENST00000498259 TPRXLQ17RH7 258 aa4.64□□□□□ -1.67
SF3A1-210ENST00000498259 ATP11AUNQ6ZP68 121 aa4.64□□□□□ -1.67
SF3A1-210ENST00000498259 ZCCHC13Q8WW36 166 aaKnown RBP4.64□□□□□ -1.67
SF3A1-210ENST00000498259 DMBT1Q9UGM3 2413 aaPredicted RBP4.63□□□□□ -1.67
SF3A1-210ENST00000498259 H7BZZ5 65 aa4.61□□□□□ -1.67
SF3A1-210ENST00000498259 KRTAP13-3Q3SY46 172 aa4.61□□□□□ -1.67
SF3A1-210ENST00000498259 LCE3BQ5TA77 95 aa4.61□□□□□ -1.67
SF3A1-210ENST00000498259 SPANXA2-OT1Q8N9U9 137 aa4.6□□□□□ -1.67
SF3A1-210ENST00000498259 TNXBP22105 4242 aa4.6□□□□□ -1.67
SF3A1-210ENST00000498259 BIRC6Q9NR09 4857 aa4.59□□□□□ -1.67
SF3A1-210ENST00000498259 Q5W150 140 aa4.59□□□□□ -1.67
SF3A1-210ENST00000498259 C7orf65Q6ZTY9 151 aa4.59□□□□□ -1.67
SF3A1-210ENST00000498259 CYP4F30PQ9H0H9 118 aa4.59□□□□□ -1.67
SF3A1-210ENST00000498259 FAM236DA0A1B0GTK5 79 aa4.58□□□□□ -1.68
SF3A1-210ENST00000498259 IGKV2-30P06310 120 aa4.58□□□□□ -1.68
SF3A1-210ENST00000498259 FAM236CP0DP71 79 aa4.58□□□□□ -1.68
SF3A1-210ENST00000498259 RPL37P61927 97 aaKnown RBP4.58□□□□□ -1.68
SF3A1-210ENST00000498259 FAT3Q8TDW7 4589 aa4.57□□□□□ -1.68
SF3A1-210ENST00000498259 LRP1Q07954 4544 aaKnown RBP4.57□□□□□ -1.68
SF3A1-210ENST00000498259 IGKV2D-30A0A075B6S6 120 aa4.56□□□□□ -1.68
SF3A1-210ENST00000498259 PCOTHQ58A44 107 aa4.55□□□□□ -1.68
SF3A1-210ENST00000498259 MYCBP2O75592 4640 aa4.55□□□□□ -1.68
SF3A1-210ENST00000498259 SEC61BP60468 96 aaKnown RBP4.54□□□□□ -1.68
SF3A1-210ENST00000498259 CYSTM1Q9H1C7 97 aa4.54□□□□□ -1.68
SF3A1-210ENST00000498259 HERC2O95714 4834 aa4.53□□□□□ -1.68
SF3A1-210ENST00000498259 SPINK7P58062 85 aa4.52□□□□□ -1.69
SF3A1-210ENST00000498259 RPS28P62857 69 aaKnown RBP4.52□□□□□ -1.69
SF3A1-210ENST00000498259 A8MUN3 132 aa4.51□□□□□ -1.69
SF3A1-210ENST00000498259 SERP1Q9Y6X1 66 aa4.51□□□□□ -1.69
SF3A1-210ENST00000498259 KRTAP4-8A0A0G2JLE6 195 aa4.5□□□□□ -1.69
SF3A1-210ENST00000498259 ACYP2P14621 99 aa4.5□□□□□ -1.69
SF3A1-210ENST00000498259 H3BS24 57 aa4.49□□□□□ -1.69
SF3A1-210ENST00000498259 HRES1P13985 223 aa4.49□□□□□ -1.69
SF3A1-210ENST00000498259 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.7
SF3A1-210ENST00000498259 DMAC1Q96GE9 116 aa4.45□□□□□ -1.7
SF3A1-210ENST00000498259 KRTAP9-9Q9BYP9 154 aa4.45□□□□□ -1.7
SF3A1-210ENST00000498259 KRTAP9-4Q9BYQ2 154 aa4.45□□□□□ -1.7
SF3A1-210ENST00000498259 CHKB-CPT1BH3BT56 60 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms