RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LINC00308Q8TCZ7 52 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 RAB37Q96AX2 223 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 HIGD2AQ9BW72 106 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 TMEM238C9JI98 176 aa2.1□□□□□ -2.07
USP54-217ENST00000498213 NDUFC2O95298 119 aa2.1□□□□□ -2.07
USP54-217ENST00000498213 PFN2P35080 140 aa2.1□□□□□ -2.07
USP54-217ENST00000498213 KRTAP19-6Q3LI70 58 aa2.1□□□□□ -2.07
USP54-217ENST00000498213 PP632Q6XCG6 107 aa2.1□□□□□ -2.07
USP54-217ENST00000498213 A0A0B4J2C4 111 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 A6NDN8 102 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 H3BUT2 72 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 SPRR1BP22528 89 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 LINC00158P58513 81 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 VAMP3Q15836 100 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 COX6B2Q6YFQ2 88 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 Q6ZRX8 168 aa2.09□□□□□ -2.07
USP54-217ENST00000498213 H7C2G1 150 aa2.08□□□□□ -2.08
USP54-217ENST00000498213 IFITM1P13164 125 aa2.08□□□□□ -2.08
USP54-217ENST00000498213 C3orf22Q8N5N4 141 aa2.08□□□□□ -2.08
USP54-217ENST00000498213 SMCR5Q8TEV8 140 aa2.08□□□□□ -2.08
USP54-217ENST00000498213 LCE3DQ9BYE3 92 aa2.08□□□□□ -2.08
USP54-217ENST00000498213 TRBV7-6A0A0J9YX20 115 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 A0A1W2PPM0 123 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 NCR3O14931 201 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 IGLV6-57P01721 117 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 MOBPQ13875 183 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 COPS9Q8WXC6 57 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 KRTAP2-1Q9BYU5 128 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 LAMTOR3Q9UHA4 124 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 PRO1854Q9UHT4 67 aa2.07□□□□□ -2.08
USP54-217ENST00000498213 K7EP34 96 aa2.06□□□□□ -2.08
USP54-217ENST00000498213 OCIAD2Q56VL3 154 aa2.06□□□□□ -2.08
USP54-217ENST00000498213 SMIM11BQ8TCY0 68 aa2.06□□□□□ -2.08
USP54-217ENST00000498213 SPCS1Q9Y6A9 102 aa2.06□□□□□ -2.08
USP54-217ENST00000498213 TRAV23DV6A0A075B6W5 121 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 TRBV10-3A0A0K0K1G6 114 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 ZNF73O43830 326 aaPredicted RBP2.05□□□□□ -2.08
USP54-217ENST00000498213 TCL1BO95988 128 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 S100A7L2Q5SY68 101 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 LYRM7Q5U5X0 104 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 CLEC2BQ92478 149 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 SIGMAR1Q99720 223 aa2.05□□□□□ -2.08
USP54-217ENST00000498213 TRAV13-2A0A0B4J235 113 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 H3BMG7 143 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 FABP2P12104 132 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 PSMB2P49721 201 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 RPL37P61927 97 aaKnown RBP2.04□□□□□ -2.08
USP54-217ENST00000498213 PCOTHQ58A44 107 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 C9orf153Q5TBE3 101 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 Q9BRP9 147 aa2.04□□□□□ -2.08
USP54-217ENST00000498213 TEX49A0A1B0GTD5 131 aa2.03□□□□□ -2.08
USP54-217ENST00000498213 LST1O00453 97 aa2.03□□□□□ -2.08
USP54-217ENST00000498213 C6orf99Q4VX62 202 aa2.03□□□□□ -2.08
USP54-217ENST00000498213 OR13C6PQ8NH95 151 aa2.03□□□□□ -2.08
USP54-217ENST00000498213 IGLV5-48A0A075B6I7 105 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 C9JAW5 83 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 MT2AP02795 61 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 SCGB1C2P0DMR2 95 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 ELOF1P60002 83 aaKnown RBP2.02□□□□□ -2.09
USP54-217ENST00000498213 Q6JHZ5 121 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 ATP11AUNQ6ZP68 121 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 PPDPFLQ8WWR9 84 aa2.02□□□□□ -2.09
USP54-217ENST00000498213 TRBV20-1A0A075B6N2 111 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 ERC2-IT1O76042 136 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 MT1FP04733 61 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 ATXN8Q156A1 80 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 ANKRD29Q8N6D5 301 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 ANAPC13Q9BS18 74 aa2.01□□□□□ -2.09
USP54-217ENST00000498213 F8W1H4 67 aa2□□□□□ -2.09
USP54-217ENST00000498213 TRACP01848 142 aa2□□□□□ -2.09
USP54-217ENST00000498213 COX6CP09669 75 aa2□□□□□ -2.09
USP54-217ENST00000498213 COX7BP24311 80 aa2□□□□□ -2.09
USP54-217ENST00000498213 ETDBQ3ZM63 59 aa2□□□□□ -2.09
USP54-217ENST00000498213 C1orf195Q5TG92 126 aa2□□□□□ -2.09
USP54-217ENST00000498213 Q6Q795 121 aa2□□□□□ -2.09
USP54-217ENST00000498213 LINC00575Q6W349 94 aa2□□□□□ -2.09
USP54-217ENST00000498213 F8WEM9 126 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 H0YGX0 51 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 H3BT86 120 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 SNCGO76070 127 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 KRTAP10-10P60014 251 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 C5orf47Q569G3 176 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 ST20-AS1Q8NBB2 130 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 SS18L2Q9UHA2 77 aa1.99□□□□□ -2.09
USP54-217ENST00000498213 hADV29S1A0JD25 119 aa1.98□□□□□ -2.09
USP54-217ENST00000498213 BAALC-AS2P0C853 105 aa1.98□□□□□ -2.09
USP54-217ENST00000498213 Q6ZQY7 126 aa1.98□□□□□ -2.09
USP54-217ENST00000498213 TEN1Q86WV5 123 aa1.98□□□□□ -2.09
USP54-217ENST00000498213 OBSCN-AS1Q96MR7 158 aa1.98□□□□□ -2.09
USP54-217ENST00000498213 A0A1B0GX51 115 aa1.97□□□□□ -2.09
USP54-217ENST00000498213 DNAL4O96015 105 aa1.97□□□□□ -2.09
USP54-217ENST00000498213 C20orf166-AS1Q96NR2 134 aa1.97□□□□□ -2.09
USP54-217ENST00000498213 ORMDL1Q9P0S3 153 aa1.97□□□□□ -2.09
USP54-217ENST00000498213 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 TRBV7-7A0A0K0K1E9 115 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 C9orf92A6NGG3 77 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 J3KT08 172 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 SPRR2EP22531 72 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 SPRR2BP35325 72 aa1.96□□□□□ -2.1
USP54-217ENST00000498213 SPRR2AP35326 72 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 240.5 ms