RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, human

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-222	ENST00000496567	IGKV3D-7	A0A0C4DH55	119 aa		11.96	□□□□□ -0.5
C9orf3-222	ENST00000496567	NDUFB1	O75438	58 aa		11.96	□□□□□ -0.5
C9orf3-222	ENST00000496567	MT-ATP8	P03928	68 aa		11.96	□□□□□ -0.5
C9orf3-222	ENST00000496567	BPY2	O14599	106 aa		11.95	□□□□□ -0.5
C9orf3-222	ENST00000496567		A0A1B0GVX0	72 aa		11.92	□□□□□ -0.5
C9orf3-222	ENST00000496567		A8MWP4	228 aa		11.92	□□□□□ -0.5
C9orf3-222	ENST00000496567	LRP2	P98164	4655 aa		11.92	□□□□□ -0.5
C9orf3-222	ENST00000496567	ATP5EP2	Q5VTU8	51 aa		11.92	□□□□□ -0.5
C9orf3-222	ENST00000496567	IGHV6-1	A0A0B4J1U7	121 aa		11.91	□□□□□ -0.5
C9orf3-222	ENST00000496567	CXCL6	P80162	114 aa		11.89	□□□□□ -0.51
C9orf3-222	ENST00000496567	XP32	Q5T750	250 aa		11.89	□□□□□ -0.51
C9orf3-222	ENST00000496567	DSCR10	P59022	87 aa		11.88	□□□□□ -0.51
C9orf3-222	ENST00000496567	LINC00313	P59037	77 aa		11.88	□□□□□ -0.51
C9orf3-222	ENST00000496567	C8orf87	E5RJ46	101 aa		11.88	□□□□□ -0.51
C9orf3-222	ENST00000496567	PRR15	Q8IV56	129 aa		11.86	□□□□□ -0.51
C9orf3-222	ENST00000496567		Q8N9L7	120 aa		11.83	□□□□□ -0.52
C9orf3-222	ENST00000496567		K7EQZ3	153 aa		11.81	□□□□□ -0.52
C9orf3-222	ENST00000496567	NOTCH2NL	Q7Z3S9	236 aa		11.81	□□□□□ -0.52
C9orf3-222	ENST00000496567	HIST1H4A	P62805	103 aa	Known RBP	11.79	□□□□□ -0.52
C9orf3-222	ENST00000496567	C8orf17	Q9NRJ1	99 aa		11.79	□□□□□ -0.52
C9orf3-222	ENST00000496567	IMUP	Q9GZP8	106 aa		11.76	□□□□□ -0.53
C9orf3-222	ENST00000496567		A0A087WVE0	104 aa		11.75	□□□□□ -0.53
C9orf3-222	ENST00000496567	KRTAP16-1	A8MUX0	517 aa		11.75	□□□□□ -0.53
C9orf3-222	ENST00000496567	SEC61B	P60468	96 aa	Known RBP	11.74	□□□□□ -0.53
C9orf3-222	ENST00000496567	RPL37	P61927	97 aa	Known RBP	11.74	□□□□□ -0.53
C9orf3-222	ENST00000496567		Q75L30	129 aa		11.74	□□□□□ -0.53
C9orf3-222	ENST00000496567	C20orf166-AS1	Q96NR2	134 aa		11.74	□□□□□ -0.53
C9orf3-222	ENST00000496567	MMP24-AS1	A0A0U1RRL7	71 aa		11.71	□□□□□ -0.53
C9orf3-222	ENST00000496567		A8MUU9	505 aa		11.71	□□□□□ -0.54
C9orf3-222	ENST00000496567	UBR4	Q5T4S7	5183 aa		11.7	□□□□□ -0.54
C9orf3-222	ENST00000496567	hDV103S1	A0JD37	113 aa		11.67	□□□□□ -0.54
C9orf3-222	ENST00000496567	TMEM254	Q8TBM7	123 aa		11.66	□□□□□ -0.54
C9orf3-222	ENST00000496567	ATP11AUN	Q6ZP68	121 aa		11.64	□□□□□ -0.55
C9orf3-222	ENST00000496567	MUC17	Q685J3	4493 aa		11.64	□□□□□ -0.55
C9orf3-222	ENST00000496567	MRPL34	Q9BQ48	92 aa	Known RBP	11.63	□□□□□ -0.55
C9orf3-222	ENST00000496567	PCOTH	Q58A44	107 aa		11.62	□□□□□ -0.55
C9orf3-222	ENST00000496567	CASC2	Q6XLA1	102 aa		11.62	□□□□□ -0.55
C9orf3-222	ENST00000496567		Q8N9P0	234 aa	Predicted RBP	11.62	□□□□□ -0.55
C9orf3-222	ENST00000496567	HCG22	E2RYF7	251 aa		11.62	□□□□□ -0.55
C9orf3-222	ENST00000496567	WFDC13	Q8IUB5	93 aa		11.62	□□□□□ -0.55
C9orf3-222	ENST00000496567	FAM236A	A0A1B0GUQ0	79 aa		11.6	□□□□□ -0.55
C9orf3-222	ENST00000496567	FAM236B	A0A1B0GV22	79 aa		11.6	□□□□□ -0.55
C9orf3-222	ENST00000496567	NDUFS5	O43920	106 aa		11.54	□□□□□ -0.56
C9orf3-222	ENST00000496567	SCGB1A1	P11684	91 aa		11.53	□□□□□ -0.56
C9orf3-222	ENST00000496567	RNF213	Q63HN8	5207 aa		11.5	□□□□□ -0.57
C9orf3-222	ENST00000496567	ZCCHC13	Q8WW36	166 aa	Known RBP	11.49	□□□□□ -0.57
C9orf3-222	ENST00000496567	ATOX1	O00244	68 aa		11.43	□□□□□ -0.58
C9orf3-222	ENST00000496567	KRTAP4-1	Q9BYQ7	146 aa		11.43	□□□□□ -0.58
C9orf3-222	ENST00000496567	MUC2	Q02817	5179 aa		11.4	□□□□□ -0.58
C9orf3-222	ENST00000496567	TP53AIP1	Q9HCN2	124 aa		11.39	□□□□□ -0.59
C9orf3-222	ENST00000496567	OCR1	Q9BZK8	76 aa		11.37	□□□□□ -0.59
C9orf3-222	ENST00000496567	ANAPC13	Q9BS18	74 aa		11.33	□□□□□ -0.6
C9orf3-222	ENST00000496567	SMIM20	Q8N5G0	67 aa		11.33	□□□□□ -0.6
C9orf3-222	ENST00000496567		Q5W150	140 aa		11.32	□□□□□ -0.6
C9orf3-222	ENST00000496567	TRAV7	A0A075B6U4	112 aa		11.31	□□□□□ -0.6
C9orf3-222	ENST00000496567	SERP2	Q8N6R1	65 aa		11.28	□□□□□ -0.6
C9orf3-222	ENST00000496567	UQCRQ	O14949	82 aa		11.25	□□□□□ -0.61
C9orf3-222	ENST00000496567	SPINK7	P58062	85 aa		11.25	□□□□□ -0.61
C9orf3-222	ENST00000496567		A0A0U1RQV1	116 aa		11.24	□□□□□ -0.61
C9orf3-222	ENST00000496567	COX7C	P15954	63 aa		11.21	□□□□□ -0.61
C9orf3-222	ENST00000496567	TRAV22	A0A0B4J277	110 aa		11.2	□□□□□ -0.62
C9orf3-222	ENST00000496567	IGKV2D-30	A0A075B6S6	120 aa		11.18	□□□□□ -0.62
C9orf3-222	ENST00000496567	IGKV2-30	P06310	120 aa		11.18	□□□□□ -0.62
C9orf3-222	ENST00000496567	PCP4	P48539	62 aa		11.18	□□□□□ -0.62
C9orf3-222	ENST00000496567	C7orf65	Q6ZTY9	151 aa		11.18	□□□□□ -0.62
C9orf3-222	ENST00000496567	C5orf47	Q569G3	176 aa		11.16	□□□□□ -0.62
C9orf3-222	ENST00000496567		H0Y9P7	68 aa		11.16	□□□□□ -0.62
C9orf3-222	ENST00000496567	HRES1	P13985	223 aa		11.14	□□□□□ -0.63
C9orf3-222	ENST00000496567	CCDC179	H3BU77	68 aa		11.11	□□□□□ -0.63
C9orf3-222	ENST00000496567	MP68	P56378	58 aa		11.11	□□□□□ -0.63
C9orf3-222	ENST00000496567	C20orf197	Q8N268	126 aa		11.11	□□□□□ -0.63
C9orf3-222	ENST00000496567	RBM12B-AS1	Q9P1G2	102 aa		11.1	□□□□□ -0.63
C9orf3-222	ENST00000496567	KRTAP19-2	Q3LHN2	52 aa		11.07	□□□□□ -0.64
C9orf3-222	ENST00000496567	COX6B2	Q6YFQ2	88 aa		11.07	□□□□□ -0.64
C9orf3-222	ENST00000496567	MPLKIP	Q8TAP9	179 aa		11.07	□□□□□ -0.64
C9orf3-222	ENST00000496567	LINC00208	Q96KT6	92 aa		11.07	□□□□□ -0.64
C9orf3-222	ENST00000496567	LOC101927531	A0A1B0GV80	90 aa		11.07	□□□□□ -0.64
C9orf3-222	ENST00000496567	SNURF	Q9Y675	71 aa		11.06	□□□□□ -0.64
C9orf3-222	ENST00000496567	C1orf64	Q8NEQ6	169 aa		11.04	□□□□□ -0.64
C9orf3-222	ENST00000496567		H3BPC8	53 aa		11.03	□□□□□ -0.64
C9orf3-222	ENST00000496567	FAT4	Q6V0I7	4981 aa		11.03	□□□□□ -0.64
C9orf3-222	ENST00000496567	FAM236D	A0A1B0GTK5	79 aa		11.01	□□□□□ -0.65
C9orf3-222	ENST00000496567	FAM236C	P0DP71	79 aa		11.01	□□□□□ -0.65
C9orf3-222	ENST00000496567	CYP4F30P	Q9H0H9	118 aa		11.01	□□□□□ -0.65
C9orf3-222	ENST00000496567	LCE2C	Q5TA81	110 aa		11	□□□□□ -0.65
C9orf3-222	ENST00000496567	KLKP1	Q107X0	134 aa		10.99	□□□□□ -0.65
C9orf3-222	ENST00000496567	CYSTM1	Q9H1C7	97 aa		10.98	□□□□□ -0.65
C9orf3-222	ENST00000496567	C4orf26	Q17RF5	130 aa		10.91	□□□□□ -0.66
C9orf3-222	ENST00000496567	MT1H	P80294	61 aa		10.85	□□□□□ -0.67
C9orf3-222	ENST00000496567		H7BZZ5	65 aa		10.84	□□□□□ -0.67
C9orf3-222	ENST00000496567	LCE2A	Q5TA79	106 aa	Predicted RBP	10.84	□□□□□ -0.67
C9orf3-222	ENST00000496567	NDUFC1	O43677	76 aa		10.83	□□□□□ -0.68
C9orf3-222	ENST00000496567	FLG	P20930	4061 aa	Predicted RBP	10.83	□□□□□ -0.68
C9orf3-222	ENST00000496567	H1FX-AS1	Q4G0G2	97 aa		10.79	□□□□□ -0.68
C9orf3-222	ENST00000496567		M0R2T5	61 aa		10.75	□□□□□ -0.69
C9orf3-222	ENST00000496567	KRTAP3-1	Q9BYR8	98 aa		10.73	□□□□□ -0.69
C9orf3-222	ENST00000496567	TMEM258	P61165	79 aa		10.67	□□□□□ -0.7
C9orf3-222	ENST00000496567	SPANXA2-OT1	Q8N9U9	137 aa		10.67	□□□□□ -0.7
C9orf3-222	ENST00000496567		A8MUN3	132 aa		10.65	□□□□□ -0.71
C9orf3-222	ENST00000496567		S4R3F8	94 aa		10.58	□□□□□ -0.72

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