RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 VPS13DQ5THJ4 4388 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-49A0A0A0MS15 119 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-73A0A0B4J1V6 119 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV7-4-1A0A0J9YVY3 117 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 H3BRN7 92 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 NDUFA4O00483 81 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 IGKV4-1P06312 121 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 P0C880 135 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 WT1-ASQ06250 92 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 SPAG11BQ08648 103 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 MIR22HGQ0VDD5 57 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 PDE6HQ13956 83 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 C10orf55Q5SWW7 151 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 FAM74A4Q5TZK3 123 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 SPAG11AQ6PDA7 123 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 LYPD2Q6UXB3 125 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 ZFAND2AQ8N6M9 145 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 ST20-AS1Q8NBB2 130 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 DEFB108BQ8NET1 73 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 GAFA1Q96PS6 74 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 Q9BRP9 147 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 WFDC10AQ9H1F0 79 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 ZNRD1Q9P1U0 126 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 KLK9Q9UKQ9 250 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 TANC2Q9HCD6 1990 aa1.17□□□□□ -2.22
HMGB1-208ENST00000490788 DNAH2Q9P225 4427 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-15A0A0B4J1V0 119 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 LINC00959A0A1B0GUT2 108 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 NDUFB1O75438 58 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 IGHV3-53P01767 116 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 APELAP0DMC3 54 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 RNASE3P12724 160 aaKnown RBP1.16□□□□□ -2.22
HMGB1-208ENST00000490788 PDE6GP18545 87 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 POLR2KP53803 58 aaKnown RBP1.16□□□□□ -2.22
HMGB1-208ENST00000490788 NTM-AS1Q6ZSK4 140 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 Q8NDZ9 215 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 COX7B2Q8TF08 81 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 PLAC8Q9NZF1 115 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 LINC01558Q9Y6Z2 57 aa1.16□□□□□ -2.22
HMGB1-208ENST00000490788 PKD1P98161 4303 aa1.15□□□□□ -2.22
HMGB1-208ENST00000490788 TRGV2A0A075B6R0 118 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 ETDCA0A1B0GVM5 59 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 A0A1B0GW54 56 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 TRBV6-4A0A1B0GX49 114 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 A8MWP4 228 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 IGHV1-46P01743 117 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 TLX1NBP0CAT3 122 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 LUZP6Q538Z0 58 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 PRR9Q5T870 116 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 Q5W150 140 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.15□□□□□ -2.23
HMGB1-208ENST00000490788 COA5Q86WW8 74 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 TMEM167AQ8TBQ9 72 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 CDKN2A-AS1Q9UH64 79 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 LRP1BQ9NZR2 4599 aa1.15□□□□□ -2.23
HMGB1-208ENST00000490788 PKHD1L1Q86WI1 4243 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 IGLV1-50A0A075B6I6 118 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 IGHV3-74A0A0B4J1X5 117 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 H0Y9P7 68 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 I3L2K1 104 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 CCL18P55774 89 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 LINC00158P58513 81 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 CNBPP62633 177 aaKnown RBP1.14□□□□□ -2.23
HMGB1-208ENST00000490788 COX6A2Q02221 97 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 SPANXA2-OT1Q8N9U9 137 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 C8orf17Q9NRJ1 99 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 MACF1Q9UPN3 7388 aaKnown RBP1.14□□□□□ -2.23
HMGB1-208ENST00000490788 DNAH5Q8TE73 4624 aa1.14□□□□□ -2.23
HMGB1-208ENST00000490788 DNAH17Q9UFH2 4485 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 SSPOA2VEC9 5147 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 IGKV3D-11A0A0A0MRZ8 115 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 TRGV4A0A0C4DH28 118 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 A0A1B0GVX0 72 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 K7ERS5 55 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 M0QY20 66 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 IGHV3-11P01762 117 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 KRTAP25-1Q3LHN0 102 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 KRTAP21-2Q3LI59 83 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 LINC00575Q6W349 94 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 C15orf56Q8N910 161 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 C20orf166-AS1Q96NR2 134 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 XAGE1AQ9HD64 81 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 LENEPQ9Y5L5 61 aa1.13□□□□□ -2.23
HMGB1-208ENST00000490788 DNAH6Q9C0G6 4158 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 HEATR1Q9H583 2144 aaKnown RBP1.12□□□□□ -2.23
HMGB1-208ENST00000490788 VPS13BQ7Z7G8 4022 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 K7EIM0 57 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 SPATA8Q6RVD6 105 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 CIRBP-AS1Q8TBR5 109 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 CAMK2N2Q96S95 79 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 LINC00467Q9BRT7 94 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 CHCHD7Q9BUK0 85 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 KCNQ1DNQ9H478 68 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 HEATR5BQ9P2D3 2071 aa1.12□□□□□ -2.23
HMGB1-208ENST00000490788 A8MTW9 85 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 A8MUU9 505 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 H3BQ85 93 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 H3BUX3 64 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 COX7BP24311 80 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms