RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 RPS28P62857 69 aaKnown RBP11.35□□□□□ -0.59
CCM2-216ENST00000488727 NDUFC1O43677 76 aa11.34□□□□□ -0.59
CCM2-216ENST00000488727 TMEM254Q8TBM7 123 aa11.34□□□□□ -0.59
CCM2-216ENST00000488727 HCG22E2RYF7 251 aa11.33□□□□□ -0.6
CCM2-216ENST00000488727 J3KT08 172 aa11.33□□□□□ -0.6
CCM2-216ENST00000488727 LINC00472Q9H8W2 130 aa11.32□□□□□ -0.6
CCM2-216ENST00000488727 SNURFQ9Y675 71 aa11.32□□□□□ -0.6
CCM2-216ENST00000488727 TYMSOSQ8TAI1 123 aa11.31□□□□□ -0.6
CCM2-216ENST00000488727 A0A0U1RQV1 116 aa11.29□□□□□ -0.6
CCM2-216ENST00000488727 DEFB116Q30KQ4 102 aa11.29□□□□□ -0.6
CCM2-216ENST00000488727 FAM236DA0A1B0GTK5 79 aa11.29□□□□□ -0.6
CCM2-216ENST00000488727 FAM236CP0DP71 79 aa11.29□□□□□ -0.6
CCM2-216ENST00000488727 IGLV9-49A0A0B4J1Y8 123 aa11.28□□□□□ -0.6
CCM2-216ENST00000488727 HERC1Q15751 4861 aa11.26□□□□□ -0.61
CCM2-216ENST00000488727 A8MWP4 228 aa11.26□□□□□ -0.61
CCM2-216ENST00000488727 PRR15Q8IV56 129 aa11.25□□□□□ -0.61
CCM2-216ENST00000488727 MOBPQ13875 183 aa11.23□□□□□ -0.61
CCM2-216ENST00000488727 ATP5EP56381 51 aaPredicted RBP11.21□□□□□ -0.61
CCM2-216ENST00000488727 Q96NJ1 140 aa11.2□□□□□ -0.62
CCM2-216ENST00000488727 WFDC13Q8IUB5 93 aa11.19□□□□□ -0.62
CCM2-216ENST00000488727 C5orf47Q569G3 176 aa11.18□□□□□ -0.62
CCM2-216ENST00000488727 LINC00304Q8N9R0 145 aa11.18□□□□□ -0.62
CCM2-216ENST00000488727 SSBP3-AS1Q7Z2R9 100 aa11.17□□□□□ -0.62
CCM2-216ENST00000488727 CASC2Q6XLA1 102 aa11.16□□□□□ -0.62
CCM2-216ENST00000488727 ZCCHC13Q8WW36 166 aaKnown RBP11.16□□□□□ -0.62
CCM2-216ENST00000488727 SERP1Q9Y6X1 66 aa11.15□□□□□ -0.62
CCM2-216ENST00000488727 NDUFB1O75438 58 aa11.14□□□□□ -0.63
CCM2-216ENST00000488727 MMP24-AS1A0A0U1RRL7 71 aa11.12□□□□□ -0.63
CCM2-216ENST00000488727 HRCT1Q6UXD1 115 aa11.11□□□□□ -0.63
CCM2-216ENST00000488727 SPAG11AQ6PDA7 123 aa11.09□□□□□ -0.63
CCM2-216ENST00000488727 CD164Q04900 197 aa11.08□□□□□ -0.64
CCM2-216ENST00000488727 ASB16-AS1Q495Z4 193 aa11.08□□□□□ -0.64
CCM2-216ENST00000488727 C4orf48Q5BLP8 95 aa11.07□□□□□ -0.64
CCM2-216ENST00000488727 MP68P56378 58 aa11.05□□□□□ -0.64
CCM2-216ENST00000488727 hDV103S1A0JD37 113 aa11.04□□□□□ -0.64
CCM2-216ENST00000488727 H3BPC8 53 aa11.04□□□□□ -0.64
CCM2-216ENST00000488727 SPINK1P00995 79 aa11.04□□□□□ -0.64
CCM2-216ENST00000488727 A0A1B0GVX0 72 aa11.03□□□□□ -0.64
CCM2-216ENST00000488727 C8orf17Q9NRJ1 99 aa11.03□□□□□ -0.64
CCM2-216ENST00000488727 HMCN2Q8NDA2 5059 aa10.99□□□□□ -0.65
CCM2-216ENST00000488727 H0Y9P7 68 aa10.99□□□□□ -0.65
CCM2-216ENST00000488727 RPS29P62273 56 aaKnown RBP10.99□□□□□ -0.65
CCM2-216ENST00000488727 RETNLBQ9BQ08 111 aa10.98□□□□□ -0.65
CCM2-216ENST00000488727 TRAV22A0A0B4J277 110 aa10.96□□□□□ -0.65
CCM2-216ENST00000488727 TP53AIP1Q9HCN2 124 aa10.96□□□□□ -0.65
CCM2-216ENST00000488727 IGHV6-1A0A0B4J1U7 121 aa10.95□□□□□ -0.66
CCM2-216ENST00000488727 LINC00208Q96KT6 92 aa10.95□□□□□ -0.66
CCM2-216ENST00000488727 SMIM26A0A096LP01 95 aa10.92□□□□□ -0.66
CCM2-216ENST00000488727 Q5XG85 94 aa10.92□□□□□ -0.66
CCM2-216ENST00000488727 CYP4F30PQ9H0H9 118 aa10.91□□□□□ -0.66
CCM2-216ENST00000488727 PRR4Q16378 134 aa10.9□□□□□ -0.66
CCM2-216ENST00000488727 MRPL34Q9BQ48 92 aaKnown RBP10.9□□□□□ -0.66
CCM2-216ENST00000488727 LIMD2Q9BT23 127 aa10.9□□□□□ -0.66
CCM2-216ENST00000488727 C1orf64Q8NEQ6 169 aa10.87□□□□□ -0.67
CCM2-216ENST00000488727 SPANXA2-OT1Q8N9U9 137 aa10.87□□□□□ -0.67
CCM2-216ENST00000488727 C8orf87E5RJ46 101 aa10.85□□□□□ -0.67
CCM2-216ENST00000488727 NOTCH2NLQ7Z3S9 236 aa10.85□□□□□ -0.67
CCM2-216ENST00000488727 FP248Q71RG6 208 aaPredicted RBP10.83□□□□□ -0.68
CCM2-216ENST00000488727 LPAP08519 4548 aa10.8□□□□□ -0.68
CCM2-216ENST00000488727 IGLV7-46A0A075B6I9 117 aa10.8□□□□□ -0.68
CCM2-216ENST00000488727 NDUFS5O43920 106 aa10.8□□□□□ -0.68
CCM2-216ENST00000488727 C1orf195Q5TG92 126 aa10.79□□□□□ -0.68
CCM2-216ENST00000488727 C4orf26Q17RF5 130 aa10.78□□□□□ -0.68
CCM2-216ENST00000488727 LRP2P98164 4655 aa10.77□□□□□ -0.69
CCM2-216ENST00000488727 TPRXLQ17RH7 258 aa10.72□□□□□ -0.69
CCM2-216ENST00000488727 KRTAP13-3Q3SY46 172 aa10.71□□□□□ -0.69
CCM2-216ENST00000488727 LINC00313P59037 77 aa10.7□□□□□ -0.7
CCM2-216ENST00000488727 SVIPQ8NHG7 77 aa10.7□□□□□ -0.7
CCM2-216ENST00000488727 LOC101927531A0A1B0GV80 90 aa10.67□□□□□ -0.7
CCM2-216ENST00000488727 Q8N9P0 234 aaPredicted RBP10.66□□□□□ -0.7
CCM2-216ENST00000488727 Q5W150 140 aa10.64□□□□□ -0.71
CCM2-216ENST00000488727 PCOTHQ58A44 107 aa10.64□□□□□ -0.71
CCM2-216ENST00000488727 KRTAP16-1A8MUX0 517 aa10.62□□□□□ -0.71
CCM2-216ENST00000488727 UBR4Q5T4S7 5183 aa10.61□□□□□ -0.71
CCM2-216ENST00000488727 Q1T7F1 81 aa10.61□□□□□ -0.71
CCM2-216ENST00000488727 MPLKIPQ8TAP9 179 aa10.61□□□□□ -0.71
CCM2-216ENST00000488727 C9orf92A6NGG3 77 aa10.58□□□□□ -0.72
CCM2-216ENST00000488727 XP32Q5T750 250 aa10.53□□□□□ -0.72
CCM2-216ENST00000488727 COA5Q86WW8 74 aa10.53□□□□□ -0.72
CCM2-216ENST00000488727 V9GYY9 64 aa10.51□□□□□ -0.73
CCM2-216ENST00000488727 IGKV2-30P06310 120 aa10.47□□□□□ -0.73
CCM2-216ENST00000488727 HRES1P13985 223 aa10.42□□□□□ -0.74
CCM2-216ENST00000488727 MUC17Q685J3 4493 aa10.38□□□□□ -0.75
CCM2-216ENST00000488727 DMAC1Q96GE9 116 aa10.37□□□□□ -0.75
CCM2-216ENST00000488727 RNF213Q63HN8 5207 aa10.36□□□□□ -0.75
CCM2-216ENST00000488727 RPL37P61927 97 aaKnown RBP10.35□□□□□ -0.75
CCM2-216ENST00000488727 PRO0628Q9UI54 55 aa10.35□□□□□ -0.75
CCM2-216ENST00000488727 PSPHP1O15172 72 aa10.34□□□□□ -0.75
CCM2-216ENST00000488727 ACYP2P14621 99 aa10.34□□□□□ -0.75
CCM2-216ENST00000488727 SEC61BP60468 96 aaKnown RBP10.33□□□□□ -0.76
CCM2-216ENST00000488727 A8MUN3 132 aa10.32□□□□□ -0.76
CCM2-216ENST00000488727 Q75L30 129 aa10.3□□□□□ -0.76
CCM2-216ENST00000488727 C20orf166-AS1Q96NR2 134 aa10.3□□□□□ -0.76
CCM2-216ENST00000488727 Q5VV11 94 aa10.3□□□□□ -0.76
CCM2-216ENST00000488727 BRK1Q8WUW1 75 aa10.29□□□□□ -0.76
CCM2-216ENST00000488727 MUC2Q02817 5179 aa10.29□□□□□ -0.76
CCM2-216ENST00000488727 IGKV2D-30A0A075B6S6 120 aa10.28□□□□□ -0.76
CCM2-216ENST00000488727 A8MUU9 505 aa10.28□□□□□ -0.76
CCM2-216ENST00000488727 LINC01558Q9Y6Z2 57 aa10.28□□□□□ -0.76
CCM2-216ENST00000488727 PRR15LQ9BU68 103 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms