RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CYSTM1Q9H1C7 97 aa5.58□□□□□ -1.52
HDAC3-208ENST00000476739 LINC01547P58512 204 aaPredicted RBP5.57□□□□□ -1.52
HDAC3-208ENST00000476739 CD164Q04900 197 aa5.57□□□□□ -1.52
HDAC3-208ENST00000476739 PRR4Q16378 134 aa5.57□□□□□ -1.52
HDAC3-208ENST00000476739 DEFB105AQ8NG35 78 aa5.57□□□□□ -1.52
HDAC3-208ENST00000476739 C14orf132Q9NPU4 83 aa5.56□□□□□ -1.52
HDAC3-208ENST00000476739 FP248Q71RG6 208 aaPredicted RBP5.55□□□□□ -1.52
HDAC3-208ENST00000476739 SSBP3-AS1Q7Z2R9 100 aa5.55□□□□□ -1.52
HDAC3-208ENST00000476739 SMIM29Q86T20 159 aa5.55□□□□□ -1.52
HDAC3-208ENST00000476739 A0A087WVE0 104 aa5.54□□□□□ -1.52
HDAC3-208ENST00000476739 SPAG11AQ6PDA7 123 aa5.54□□□□□ -1.52
HDAC3-208ENST00000476739 LINC00575Q6W349 94 aa5.54□□□□□ -1.52
HDAC3-208ENST00000476739 IGLV5-48A0A075B6I7 105 aa5.53□□□□□ -1.52
HDAC3-208ENST00000476739 LOC110117498A0A087WWA1 95 aa5.53□□□□□ -1.52
HDAC3-208ENST00000476739 C4orf48Q5BLP8 95 aa5.53□□□□□ -1.52
HDAC3-208ENST00000476739 Q8N377 158 aa5.53□□□□□ -1.52
HDAC3-208ENST00000476739 FAM218AQ96MZ4 157 aa5.53□□□□□ -1.52
HDAC3-208ENST00000476739 F8WEM9 126 aa5.52□□□□□ -1.53
HDAC3-208ENST00000476739 A0A0G2JQZ4 141 aa5.51□□□□□ -1.53
HDAC3-208ENST00000476739 A0A0U1RQV1 116 aa5.51□□□□□ -1.53
HDAC3-208ENST00000476739 SPINK1P00995 79 aa5.51□□□□□ -1.53
HDAC3-208ENST00000476739 Q6ZQY7 126 aa5.5□□□□□ -1.53
HDAC3-208ENST00000476739 Q1T7F1 81 aa5.49□□□□□ -1.53
HDAC3-208ENST00000476739 IGLV7-46A0A075B6I9 117 aa5.47□□□□□ -1.53
HDAC3-208ENST00000476739 RPS29P62273 56 aaKnown RBP5.47□□□□□ -1.53
HDAC3-208ENST00000476739 TRBV7-4A0A0J9YYF1 115 aa5.46□□□□□ -1.54
HDAC3-208ENST00000476739 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.46□□□□□ -1.54
HDAC3-208ENST00000476739 TMEM254Q8TBM7 123 aa5.46□□□□□ -1.54
HDAC3-208ENST00000476739 A0A1B0GW54 56 aa5.44□□□□□ -1.54
HDAC3-208ENST00000476739 NDUFS5O43920 106 aa5.44□□□□□ -1.54
HDAC3-208ENST00000476739 NREPQ16612 68 aa5.44□□□□□ -1.54
HDAC3-208ENST00000476739 Q6ZQT0 140 aa5.44□□□□□ -1.54
HDAC3-208ENST00000476739 RNF213Q63HN8 5207 aa5.44□□□□□ -1.54
HDAC3-208ENST00000476739 TPRXLQ17RH7 258 aa5.43□□□□□ -1.54
HDAC3-208ENST00000476739 Q6ZVQ6 151 aa5.42□□□□□ -1.54
HDAC3-208ENST00000476739 SNURFQ9Y675 71 aa5.42□□□□□ -1.54
HDAC3-208ENST00000476739 IGLV8-61A0A075B6I0 122 aa5.41□□□□□ -1.54
HDAC3-208ENST00000476739 KRTAP13-3Q3SY46 172 aa5.41□□□□□ -1.54
HDAC3-208ENST00000476739 IGFL1Q6UW32 110 aa5.41□□□□□ -1.54
HDAC3-208ENST00000476739 BPY2O14599 106 aa5.4□□□□□ -1.54
HDAC3-208ENST00000476739 NDUFB1O75438 58 aa5.4□□□□□ -1.54
HDAC3-208ENST00000476739 MPLKIPQ8TAP9 179 aa5.4□□□□□ -1.54
HDAC3-208ENST00000476739 LIMD2Q9BT23 127 aa5.39□□□□□ -1.55
HDAC3-208ENST00000476739 MUC17Q685J3 4493 aa5.38□□□□□ -1.55
HDAC3-208ENST00000476739 hDV103S1A0JD37 113 aa5.38□□□□□ -1.55
HDAC3-208ENST00000476739 KTN1-AS1Q86SY8 53 aa5.37□□□□□ -1.55
HDAC3-208ENST00000476739 CYP4F30PQ9H0H9 118 aa5.37□□□□□ -1.55
HDAC3-208ENST00000476739 OCR1Q9BZK8 76 aa5.35□□□□□ -1.55
HDAC3-208ENST00000476739 ATP11AUNQ6ZP68 121 aa5.34□□□□□ -1.55
HDAC3-208ENST00000476739 MUC2Q02817 5179 aa5.34□□□□□ -1.55
HDAC3-208ENST00000476739 C9orf92A6NGG3 77 aa5.32□□□□□ -1.56
HDAC3-208ENST00000476739 XP32Q5T750 250 aa5.32□□□□□ -1.56
HDAC3-208ENST00000476739 A0A1W2PNM2 257 aa5.31□□□□□ -1.56
HDAC3-208ENST00000476739 ASB16-AS1Q495Z4 193 aa5.3□□□□□ -1.56
HDAC3-208ENST00000476739 H3BPC8 53 aa5.29□□□□□ -1.56
HDAC3-208ENST00000476739 A0A087WSZ3 146 aa5.28□□□□□ -1.56
HDAC3-208ENST00000476739 TRAV22A0A0B4J277 110 aa5.28□□□□□ -1.56
HDAC3-208ENST00000476739 C1orf64Q8NEQ6 169 aa5.28□□□□□ -1.56
HDAC3-208ENST00000476739 KRTAP4-1Q9BYQ7 146 aa5.28□□□□□ -1.56
HDAC3-208ENST00000476739 IGKV4-1P06312 121 aa5.27□□□□□ -1.57
HDAC3-208ENST00000476739 SPANXA2-OT1Q8N9U9 137 aa5.27□□□□□ -1.57
HDAC3-208ENST00000476739 Q96NJ1 140 aa5.26□□□□□ -1.57
HDAC3-208ENST00000476739 RBM12B-AS1Q9P1G2 102 aa5.26□□□□□ -1.57
HDAC3-208ENST00000476739 ZCCHC13Q8WW36 166 aaKnown RBP5.25□□□□□ -1.57
HDAC3-208ENST00000476739 SEC61BP60468 96 aaKnown RBP5.24□□□□□ -1.57
HDAC3-208ENST00000476739 MP68P56378 58 aa5.23□□□□□ -1.57
HDAC3-208ENST00000476739 LCA10Q71F78 164 aa5.23□□□□□ -1.57
HDAC3-208ENST00000476739 PCOTHQ58A44 107 aa5.22□□□□□ -1.57
HDAC3-208ENST00000476739 C7orf65Q6ZTY9 151 aa5.22□□□□□ -1.57
HDAC3-208ENST00000476739 Q75L30 129 aa5.22□□□□□ -1.57
HDAC3-208ENST00000476739 LOC101927531A0A1B0GV80 90 aa5.21□□□□□ -1.58
HDAC3-208ENST00000476739 CHKB-CPT1BH3BT56 60 aa5.21□□□□□ -1.58
HDAC3-208ENST00000476739 FAT4Q6V0I7 4981 aa5.2□□□□□ -1.58
HDAC3-208ENST00000476739 HCG22E2RYF7 251 aa5.2□□□□□ -1.58
HDAC3-208ENST00000476739 PSPHP1O15172 72 aa5.2□□□□□ -1.58
HDAC3-208ENST00000476739 CDC42SE1Q9NRR8 79 aa5.2□□□□□ -1.58
HDAC3-208ENST00000476739 RPL37P61927 97 aaKnown RBP5.19□□□□□ -1.58
HDAC3-208ENST00000476739 DEFB116Q30KQ4 102 aa5.19□□□□□ -1.58
HDAC3-208ENST00000476739 Q5VV11 94 aa5.19□□□□□ -1.58
HDAC3-208ENST00000476739 A8MUN3 132 aa5.18□□□□□ -1.58
HDAC3-208ENST00000476739 LINC00472Q9H8W2 130 aa5.18□□□□□ -1.58
HDAC3-208ENST00000476739 A6NN06 94 aa5.17□□□□□ -1.58
HDAC3-208ENST00000476739 LINC00208Q96KT6 92 aa5.17□□□□□ -1.58
HDAC3-208ENST00000476739 DSCR10P59022 87 aa5.16□□□□□ -1.58
HDAC3-208ENST00000476739 Q8N9P0 234 aaPredicted RBP5.16□□□□□ -1.58
HDAC3-208ENST00000476739 NOTCH2NLQ7Z3S9 236 aa5.15□□□□□ -1.59
HDAC3-208ENST00000476739 A6NED7 52 aa5.14□□□□□ -1.59
HDAC3-208ENST00000476739 LCE2AQ5TA79 106 aaPredicted RBP5.13□□□□□ -1.59
HDAC3-208ENST00000476739 KRTAP19-2Q3LHN2 52 aa5.12□□□□□ -1.59
HDAC3-208ENST00000476739 SPTSSBQ8NFR3 76 aa5.12□□□□□ -1.59
HDAC3-208ENST00000476739 C20orf166-AS1Q96NR2 134 aa5.12□□□□□ -1.59
HDAC3-208ENST00000476739 PRR15LQ9BU68 103 aa5.12□□□□□ -1.59
HDAC3-208ENST00000476739 A8MUU9 505 aa5.11□□□□□ -1.59
HDAC3-208ENST00000476739 KRTAP16-1A8MUX0 517 aa5.11□□□□□ -1.59
HDAC3-208ENST00000476739 LINC00313P59037 77 aa5.11□□□□□ -1.59
HDAC3-208ENST00000476739 IGHV6-1A0A0B4J1U7 121 aa5.1□□□□□ -1.59
HDAC3-208ENST00000476739 LINC01558Q9Y6Z2 57 aa5.1□□□□□ -1.59
HDAC3-208ENST00000476739 C8orf87E5RJ46 101 aa5.09□□□□□ -1.59
HDAC3-208ENST00000476739 LCE2CQ5TA81 110 aa5.09□□□□□ -1.59
HDAC3-208ENST00000476739 CASC2Q6XLA1 102 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms