RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 H3BNG1 76 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 STATHP02808 62 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 PRM1P04553 51 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 TNXBP22105 4242 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 BSNQ9UPA5 3926 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 BDP1A6H8Y1 2624 aa1.2□□□□□ -2.22
CCDC88A-210ENST00000468534 U3KQA8 63 aa1.2□□□□□ -2.22
CCDC88A-210ENST00000468534 HELZ2Q9BYK8 2649 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-210ENST00000468534 ANK2Q01484 3957 aa1.2□□□□□ -2.22
CCDC88A-210ENST00000468534 SETD2Q9BYW2 2564 aaPredicted RBP1.2□□□□□ -2.22
CCDC88A-210ENST00000468534 NBASA2RRP1 2371 aa1.19□□□□□ -2.22
CCDC88A-210ENST00000468534 A0A096LNI7 61 aa1.19□□□□□ -2.22
CCDC88A-210ENST00000468534 HTN1P15515 57 aa1.19□□□□□ -2.22
CCDC88A-210ENST00000468534 CREBBPQ92793 2442 aa1.19□□□□□ -2.22
CCDC88A-210ENST00000468534 APC2O95996 2303 aa1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 TNRC18O15417 2968 aaPredicted RBP1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 UBR5O95071 2799 aaPredicted RBP1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 SPTBN4Q9H254 2564 aa1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 SACSQ9NZJ4 4579 aa1.18□□□□□ -2.22
CCDC88A-210ENST00000468534 DEFB136Q30KP8 78 aa1.17□□□□□ -2.22
CCDC88A-210ENST00000468534 CCDC168Q8NDH2 2452 aa1.17□□□□□ -2.22
CCDC88A-210ENST00000468534 PRKDCP78527 4128 aaKnown RBP1.17□□□□□ -2.22
CCDC88A-210ENST00000468534 CHD8Q9HCK8 2581 aa1.16□□□□□ -2.22
CCDC88A-210ENST00000468534 LYSTQ99698 3801 aa1.16□□□□□ -2.22
CCDC88A-210ENST00000468534 DEFB110Q30KQ9 67 aa1.16□□□□□ -2.22
CCDC88A-210ENST00000468534 VPS13BQ7Z7G8 4022 aa1.15□□□□□ -2.22
CCDC88A-210ENST00000468534 KMT2AQ03164 3969 aa1.15□□□□□ -2.23
CCDC88A-210ENST00000468534 FBN2P35556 2912 aa1.15□□□□□ -2.23
CCDC88A-210ENST00000468534 FAT2Q9NYQ8 4349 aa1.14□□□□□ -2.23
CCDC88A-210ENST00000468534 KRTAP8-1Q8IUC2 63 aa1.13□□□□□ -2.23
CCDC88A-210ENST00000468534 DEFB124Q8NES8 71 aa1.13□□□□□ -2.23
CCDC88A-210ENST00000468534 MAP1BP46821 2468 aaKnown RBP1.12□□□□□ -2.23
CCDC88A-210ENST00000468534 COX14Q96I36 57 aa1.11□□□□□ -2.23
CCDC88A-210ENST00000468534 FRAS1Q86XX4 4008 aa1.11□□□□□ -2.23
CCDC88A-210ENST00000468534 ZNF469Q96JG9 3925 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-210ENST00000468534 NBPF19A0A087WUL8 3843 aa1.1□□□□□ -2.23
CCDC88A-210ENST00000468534 STAB1Q9NY15 2570 aa1.09□□□□□ -2.23
CCDC88A-210ENST00000468534 HIVEP3Q5T1R4 2406 aa1.08□□□□□ -2.24
CCDC88A-210ENST00000468534 CRYBG3Q68DQ2 2970 aa1.08□□□□□ -2.24
CCDC88A-210ENST00000468534 PDZD2O15018 2839 aa1.06□□□□□ -2.24
CCDC88A-210ENST00000468534 USP24Q9UPU5 2620 aa1.06□□□□□ -2.24
CCDC88A-210ENST00000468534 RIF1Q5UIP0 2472 aaKnown RBP1.05□□□□□ -2.24
CCDC88A-210ENST00000468534 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
CCDC88A-210ENST00000468534 DEFB108BQ8NET1 73 aa1.05□□□□□ -2.24
CCDC88A-210ENST00000468534 EPG5Q9HCE0 2579 aa1.04□□□□□ -2.24
CCDC88A-210ENST00000468534 FLNCQ14315 2725 aa1.04□□□□□ -2.24
CCDC88A-210ENST00000468534 MGAQ8IWI9 3026 aa1.04□□□□□ -2.24
CCDC88A-210ENST00000468534 FAM186AA6NE01 2351 aa1.04□□□□□ -2.24
CCDC88A-210ENST00000468534 DNAH3Q8TD57 4116 aa1.03□□□□□ -2.24
CCDC88A-210ENST00000468534 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
CCDC88A-210ENST00000468534 DYNC2H1Q8NCM8 4307 aaKnown RBP1.03□□□□□ -2.24
CCDC88A-210ENST00000468534 DNAH8Q96JB1 4490 aa1.03□□□□□ -2.25
CCDC88A-210ENST00000468534 ACANP16112 2415 aa1.03□□□□□ -2.25
CCDC88A-210ENST00000468534 CEP250Q9BV73 2442 aa1.03□□□□□ -2.25
CCDC88A-210ENST00000468534 GCN1Q92616 2671 aaKnown RBP1.02□□□□□ -2.25
CCDC88A-210ENST00000468534 ANK3Q12955 4377 aaKnown RBP1.02□□□□□ -2.25
CCDC88A-210ENST00000468534 USP9YO00507 2555 aaPredicted RBP1.02□□□□□ -2.25
CCDC88A-210ENST00000468534 ZFHX4Q86UP3 3567 aa1.02□□□□□ -2.25
CCDC88A-210ENST00000468534 NOTCH1P46531 2555 aa1.02□□□□□ -2.25
CCDC88A-210ENST00000468534 MTORP42345 2549 aa1.01□□□□□ -2.25
CCDC88A-210ENST00000468534 PKHD1L1Q86WI1 4243 aa1.01□□□□□ -2.25
CCDC88A-210ENST00000468534 DNAH2Q9P225 4427 aa0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 NSD1Q96L73 2696 aaPredicted RBP0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 SMR3BP02814 79 aaPredicted RBP0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 SPRR2DP22532 72 aa0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 NF1P21359 2839 aa0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 CUBNO60494 3623 aa0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 SYNE1Q8NF91 8797 aaKnown RBP0.99□□□□□ -2.25
CCDC88A-210ENST00000468534 AKAP9Q99996 3911 aa0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 PTPN13Q12923 2485 aa0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 HUWE1Q7Z6Z7 4374 aaKnown RBP0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 SPENQ96T58 3664 aaKnown RBP0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 APCP25054 2843 aa0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 ITPR3Q14573 2671 aa0.98□□□□□ -2.25
CCDC88A-210ENST00000468534 SPRR2BP35325 72 aa0.97□□□□□ -2.25
CCDC88A-210ENST00000468534 KRTAP21-1Q3LI58 79 aa0.97□□□□□ -2.25
CCDC88A-210ENST00000468534 DNAH7Q8WXX0 4024 aa0.97□□□□□ -2.25
CCDC88A-210ENST00000468534 HSPG2P98160 4391 aa0.96□□□□□ -2.26
CCDC88A-210ENST00000468534 A0A096LPF7 62 aa0.96□□□□□ -2.26
CCDC88A-210ENST00000468534 MT1AP04731 61 aa0.96□□□□□ -2.26
CCDC88A-210ENST00000468534 DEFB133Q30KQ1 61 aa0.95□□□□□ -2.26
CCDC88A-210ENST00000468534 KRTAP19-5Q3LI72 72 aa0.95□□□□□ -2.26
CCDC88A-210ENST00000468534 LRRK2Q5S007 2527 aa0.95□□□□□ -2.26
CCDC88A-210ENST00000468534 PKD1P98161 4303 aa0.95□□□□□ -2.26
CCDC88A-210ENST00000468534 CACNA1AO00555 2505 aa0.94□□□□□ -2.26
CCDC88A-210ENST00000468534 ANKHD1Q8IWZ3 2542 aaKnown RBP0.94□□□□□ -2.26
CCDC88A-210ENST00000468534 SONP18583 2426 aaKnown RBP0.94□□□□□ -2.26
CCDC88A-210ENST00000468534 LINC01556Q5JQF7 62 aa0.94□□□□□ -2.26
CCDC88A-210ENST00000468534 DCHS2Q6V1P9 2916 aa0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 ACACBO00763 2458 aa0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 SETXQ7Z333 2677 aaKnown RBP0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 NCOR2Q9Y618 2525 aa0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 COL12A1Q99715 3063 aa0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 UNC79Q9P2D8 2635 aa0.93□□□□□ -2.26
CCDC88A-210ENST00000468534 PKD1L1Q8TDX9 2849 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 RPS29P62273 56 aaKnown RBP0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 KRTAP6-2Q3LI66 62 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 Q9Y3F1 56 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 TACC2O95359 2948 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms