RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 F8WEM9 126 aa6.75□□□□□ -1.33
VPS52-213ENST00000461743 UBL5Q9BZL1 73 aa6.74□□□□□ -1.33
VPS52-213ENST00000461743 IGLV7-46A0A075B6I9 117 aa6.73□□□□□ -1.33
VPS52-213ENST00000461743 TRAV7A0A075B6U4 112 aa6.73□□□□□ -1.33
VPS52-213ENST00000461743 TMEM256-PLSCR3K7ERE1 68 aa6.73□□□□□ -1.33
VPS52-213ENST00000461743 IGLV8-61A0A075B6I0 122 aa6.72□□□□□ -1.33
VPS52-213ENST00000461743 C4orf26Q17RF5 130 aa6.72□□□□□ -1.33
VPS52-213ENST00000461743 HRCT1Q6UXD1 115 aa6.72□□□□□ -1.33
VPS52-213ENST00000461743 H3BQ85 93 aa6.71□□□□□ -1.34
VPS52-213ENST00000461743 ATP5EP56381 51 aaPredicted RBP6.71□□□□□ -1.34
VPS52-213ENST00000461743 LOC110117498A0A087WWA1 95 aa6.7□□□□□ -1.34
VPS52-213ENST00000461743 KLKP1Q107X0 134 aa6.69□□□□□ -1.34
VPS52-213ENST00000461743 LCE2DQ5TA82 110 aaPredicted RBP6.69□□□□□ -1.34
VPS52-213ENST00000461743 C20orf197Q8N268 126 aa6.69□□□□□ -1.34
VPS52-213ENST00000461743 H7BZZ5 65 aa6.68□□□□□ -1.34
VPS52-213ENST00000461743 NDUFC1O43677 76 aa6.68□□□□□ -1.34
VPS52-213ENST00000461743 PDE6GP18545 87 aa6.68□□□□□ -1.34
VPS52-213ENST00000461743 PRO0628Q9UI54 55 aa6.68□□□□□ -1.34
VPS52-213ENST00000461743 RNF213Q63HN8 5207 aa6.67□□□□□ -1.34
VPS52-213ENST00000461743 SMIM26A0A096LP01 95 aa6.67□□□□□ -1.34
VPS52-213ENST00000461743 MUC17Q685J3 4493 aa6.66□□□□□ -1.34
VPS52-213ENST00000461743 CXCL6P80162 114 aa6.66□□□□□ -1.34
VPS52-213ENST00000461743 Q6ZQT0 140 aa6.66□□□□□ -1.34
VPS52-213ENST00000461743 KRTAP13-3Q3SY46 172 aa6.65□□□□□ -1.34
VPS52-213ENST00000461743 IGFL1Q6UW32 110 aa6.64□□□□□ -1.35
VPS52-213ENST00000461743 RBM3P98179 157 aaKnown RBP6.63□□□□□ -1.35
VPS52-213ENST00000461743 ASB16-AS1Q495Z4 193 aa6.62□□□□□ -1.35
VPS52-213ENST00000461743 Q6ZVQ6 151 aa6.61□□□□□ -1.35
VPS52-213ENST00000461743 A0A0G2JQZ4 141 aa6.6□□□□□ -1.35
VPS52-213ENST00000461743 TRBV7-4A0A0J9YYF1 115 aa6.58□□□□□ -1.36
VPS52-213ENST00000461743 C1orf195Q5TG92 126 aa6.58□□□□□ -1.36
VPS52-213ENST00000461743 XP32Q5T750 250 aa6.55□□□□□ -1.36
VPS52-213ENST00000461743 NREPQ16612 68 aa6.54□□□□□ -1.36
VPS52-213ENST00000461743 SNURFQ9Y675 71 aa6.54□□□□□ -1.36
VPS52-213ENST00000461743 MUC2Q02817 5179 aa6.54□□□□□ -1.36
VPS52-213ENST00000461743 SEC61BP60468 96 aaKnown RBP6.53□□□□□ -1.36
VPS52-213ENST00000461743 A0A0U1RQV1 116 aa6.52□□□□□ -1.37
VPS52-213ENST00000461743 TMEM254Q8TBM7 123 aa6.52□□□□□ -1.37
VPS52-213ENST00000461743 BPY2O14599 106 aa6.5□□□□□ -1.37
VPS52-213ENST00000461743 A0A087WSZ3 146 aa6.49□□□□□ -1.37
VPS52-213ENST00000461743 A0A1W2PNM2 257 aa6.49□□□□□ -1.37
VPS52-213ENST00000461743 C9orf92A6NGG3 77 aa6.48□□□□□ -1.37
VPS52-213ENST00000461743 IGKV4-1P06312 121 aa6.46□□□□□ -1.38
VPS52-213ENST00000461743 OCR1Q9BZK8 76 aa6.46□□□□□ -1.38
VPS52-213ENST00000461743 KRTAP3-3Q9BYR6 98 aa6.45□□□□□ -1.38
VPS52-213ENST00000461743 KRTAP3-2Q9BYR7 98 aa6.45□□□□□ -1.38
VPS52-213ENST00000461743 A0A1B0GW54 56 aa6.44□□□□□ -1.38
VPS52-213ENST00000461743 BRK1Q8WUW1 75 aa6.44□□□□□ -1.38
VPS52-213ENST00000461743 Q96NJ1 140 aa6.44□□□□□ -1.38
VPS52-213ENST00000461743 RPL37P61927 97 aaKnown RBP6.42□□□□□ -1.38
VPS52-213ENST00000461743 V9GYY9 64 aa6.42□□□□□ -1.38
VPS52-213ENST00000461743 hDV103S1A0JD37 113 aa6.38□□□□□ -1.39
VPS52-213ENST00000461743 PRR15Q8IV56 129 aa6.38□□□□□ -1.39
VPS52-213ENST00000461743 FAT4Q6V0I7 4981 aa6.37□□□□□ -1.39
VPS52-213ENST00000461743 Q1T7F1 81 aa6.37□□□□□ -1.39
VPS52-213ENST00000461743 PCOTHQ58A44 107 aa6.37□□□□□ -1.39
VPS52-213ENST00000461743 Q75L30 129 aa6.37□□□□□ -1.39
VPS52-213ENST00000461743 LINC00472Q9H8W2 130 aa6.37□□□□□ -1.39
VPS52-213ENST00000461743 MPLKIPQ8TAP9 179 aa6.36□□□□□ -1.39
VPS52-213ENST00000461743 ZCCHC13Q8WW36 166 aaKnown RBP6.35□□□□□ -1.39
VPS52-213ENST00000461743 SEC61GP60059 68 aa6.34□□□□□ -1.39
VPS52-213ENST00000461743 Q8N9L7 120 aa6.34□□□□□ -1.39
VPS52-213ENST00000461743 C20orf166-AS1Q96NR2 134 aa6.34□□□□□ -1.39
VPS52-213ENST00000461743 KRTAP4-1Q9BYQ7 146 aa6.34□□□□□ -1.39
VPS52-213ENST00000461743 CYP4F30PQ9H0H9 118 aa6.34□□□□□ -1.39
VPS52-213ENST00000461743 A8MUU9 505 aa6.31□□□□□ -1.4
VPS52-213ENST00000461743 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
VPS52-213ENST00000461743 LINC00313P59037 77 aa6.3□□□□□ -1.4
VPS52-213ENST00000461743 ATP11AUNQ6ZP68 121 aa6.3□□□□□ -1.4
VPS52-213ENST00000461743 A0A1B0GVX0 72 aa6.29□□□□□ -1.4
VPS52-213ENST00000461743 NDUFB1O75438 58 aa6.29□□□□□ -1.4
VPS52-213ENST00000461743 DSCR10P59022 87 aa6.29□□□□□ -1.4
VPS52-213ENST00000461743 C1orf64Q8NEQ6 169 aa6.29□□□□□ -1.4
VPS52-213ENST00000461743 LCE2AQ5TA79 106 aaPredicted RBP6.28□□□□□ -1.4
VPS52-213ENST00000461743 IGHV6-1A0A0B4J1U7 121 aa6.27□□□□□ -1.41
VPS52-213ENST00000461743 KRTAP16-1A8MUX0 517 aa6.27□□□□□ -1.41
VPS52-213ENST00000461743 PMAIP1Q13794 54 aa6.27□□□□□ -1.41
VPS52-213ENST00000461743 DEFB116Q30KQ4 102 aa6.27□□□□□ -1.41
VPS52-213ENST00000461743 A8MWP4 228 aa6.24□□□□□ -1.41
VPS52-213ENST00000461743 HCG22E2RYF7 251 aa6.24□□□□□ -1.41
VPS52-213ENST00000461743 TRAV22A0A0B4J277 110 aa6.23□□□□□ -1.41
VPS52-213ENST00000461743 H3BPC8 53 aa6.23□□□□□ -1.41
VPS52-213ENST00000461743 SPANXA2-OT1Q8N9U9 137 aa6.22□□□□□ -1.41
VPS52-213ENST00000461743 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.42
VPS52-213ENST00000461743 NOTCH2NLQ7Z3S9 236 aa6.21□□□□□ -1.42
VPS52-213ENST00000461743 K7EQZ3 153 aa6.2□□□□□ -1.42
VPS52-213ENST00000461743 MP68P56378 58 aa6.2□□□□□ -1.42
VPS52-213ENST00000461743 FLGP20930 4061 aaPredicted RBP6.2□□□□□ -1.42
VPS52-213ENST00000461743 C8orf17Q9NRJ1 99 aa6.18□□□□□ -1.42
VPS52-213ENST00000461743 PSPHP1O15172 72 aa6.17□□□□□ -1.42
VPS52-213ENST00000461743 LCE2CQ5TA81 110 aa6.17□□□□□ -1.42
VPS52-213ENST00000461743 Q5VV11 94 aa6.16□□□□□ -1.42
VPS52-213ENST00000461743 Q8N9P0 234 aaPredicted RBP6.15□□□□□ -1.42
VPS52-213ENST00000461743 A8MUN3 132 aa6.14□□□□□ -1.43
VPS52-213ENST00000461743 COX6B2Q6YFQ2 88 aa6.14□□□□□ -1.43
VPS52-213ENST00000461743 LINC00208Q96KT6 92 aa6.14□□□□□ -1.43
VPS52-213ENST00000461743 MMP24-AS1A0A0U1RRL7 71 aa6.12□□□□□ -1.43
VPS52-213ENST00000461743 H0Y9P7 68 aa6.11□□□□□ -1.43
VPS52-213ENST00000461743 MT1HP80294 61 aa6.11□□□□□ -1.43
VPS52-213ENST00000461743 KTN1-AS1Q86SY8 53 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms