RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 K7EQZ3 153 aa3.4□□□□□ -1.87
CDC42BPA-209ENST00000448940 KRTAP29-1A8MX34 341 aaPredicted RBP3.4□□□□□ -1.87
CDC42BPA-209ENST00000448940 FBN1P35555 2871 aaKnown RBP3.39□□□□□ -1.87
CDC42BPA-209ENST00000448940 C20orf166-AS1Q96NR2 134 aa3.39□□□□□ -1.87
CDC42BPA-209ENST00000448940 PANO1I0J062 215 aa3.38□□□□□ -1.87
CDC42BPA-209ENST00000448940 FAM104AQ969W3 186 aa3.38□□□□□ -1.87
CDC42BPA-209ENST00000448940 KRTAP26-1Q6PEX3 210 aa3.38□□□□□ -1.87
CDC42BPA-209ENST00000448940 LINC00310P59036 64 aa3.38□□□□□ -1.87
CDC42BPA-209ENST00000448940 MRPL34Q9BQ48 92 aaKnown RBP3.37□□□□□ -1.87
CDC42BPA-209ENST00000448940 A8MWP4 228 aa3.36□□□□□ -1.87
CDC42BPA-209ENST00000448940 S4R3F8 94 aa3.36□□□□□ -1.87
CDC42BPA-209ENST00000448940 Q8N377 158 aa3.35□□□□□ -1.87
CDC42BPA-209ENST00000448940 RELNP78509 3460 aa3.35□□□□□ -1.87
CDC42BPA-209ENST00000448940 LAMA5O15230 3695 aa3.35□□□□□ -1.87
CDC42BPA-209ENST00000448940 A0A1B0GVX0 72 aa3.35□□□□□ -1.87
CDC42BPA-209ENST00000448940 R4GN34 69 aa3.35□□□□□ -1.87
CDC42BPA-209ENST00000448940 SPENQ96T58 3664 aaKnown RBP3.34□□□□□ -1.88
CDC42BPA-209ENST00000448940 A0A1B0GVY2 172 aa3.33□□□□□ -1.88
CDC42BPA-209ENST00000448940 A0A0G2JQZ4 141 aa3.33□□□□□ -1.88
CDC42BPA-209ENST00000448940 KRTAP10-10P60014 251 aa3.32□□□□□ -1.88
CDC42BPA-209ENST00000448940 ZFHX4Q86UP3 3567 aa3.32□□□□□ -1.88
CDC42BPA-209ENST00000448940 A0A1W2PNM2 257 aa3.32□□□□□ -1.88
CDC42BPA-209ENST00000448940 SPRR1AP35321 89 aa3.31□□□□□ -1.88
CDC42BPA-209ENST00000448940 A0A087X002 238 aa3.3□□□□□ -1.88
CDC42BPA-209ENST00000448940 WDFY3Q8IZQ1 3526 aa3.3□□□□□ -1.88
CDC42BPA-209ENST00000448940 DMDP11532 3685 aa3.29□□□□□ -1.88
CDC42BPA-209ENST00000448940 H7BZZ5 65 aa3.29□□□□□ -1.88
CDC42BPA-209ENST00000448940 FAM218AQ96MZ4 157 aa3.29□□□□□ -1.88
CDC42BPA-209ENST00000448940 SPRR1BP22528 89 aa3.29□□□□□ -1.88
CDC42BPA-209ENST00000448940 LOC110117498A0A087WWA1 95 aa3.28□□□□□ -1.88
CDC42BPA-209ENST00000448940 KLKP1Q107X0 134 aa3.28□□□□□ -1.88
CDC42BPA-209ENST00000448940 RPS29P62273 56 aaKnown RBP3.27□□□□□ -1.89
CDC42BPA-209ENST00000448940 SMG1Q96Q15 3661 aaKnown RBP3.27□□□□□ -1.89
CDC42BPA-209ENST00000448940 Q8N9P0 234 aaPredicted RBP3.26□□□□□ -1.89
CDC42BPA-209ENST00000448940 A0A1B0GU33 70 aa3.26□□□□□ -1.89
CDC42BPA-209ENST00000448940 ZCCHC13Q8WW36 166 aaKnown RBP3.26□□□□□ -1.89
CDC42BPA-209ENST00000448940 Q75L30 129 aa3.24□□□□□ -1.89
CDC42BPA-209ENST00000448940 LINC01558Q9Y6Z2 57 aa3.23□□□□□ -1.89
CDC42BPA-209ENST00000448940 KRTAP25-1Q3LHN0 102 aa3.23□□□□□ -1.89
CDC42BPA-209ENST00000448940 ASB16-AS1Q495Z4 193 aa3.22□□□□□ -1.89
CDC42BPA-209ENST00000448940 SPATA8Q6RVD6 105 aa3.22□□□□□ -1.89
CDC42BPA-209ENST00000448940 M0QZ58 72 aa3.22□□□□□ -1.89
CDC42BPA-209ENST00000448940 KRTAP13-2Q52LG2 175 aa3.21□□□□□ -1.9
CDC42BPA-209ENST00000448940 TPRXLQ17RH7 258 aa3.2□□□□□ -1.9
CDC42BPA-209ENST00000448940 PP632Q6XCG6 107 aa3.2□□□□□ -1.9
CDC42BPA-209ENST00000448940 SPANXA2-OT1Q8N9U9 137 aa3.2□□□□□ -1.9
CDC42BPA-209ENST00000448940 CSMD2Q7Z408 3487 aa3.2□□□□□ -1.9
CDC42BPA-209ENST00000448940 MEGF8Q7Z7M0 2845 aa3.19□□□□□ -1.9
CDC42BPA-209ENST00000448940 PRO2289Q9P1D8 64 aa3.19□□□□□ -1.9
CDC42BPA-209ENST00000448940 P0C880 135 aa3.19□□□□□ -1.9
CDC42BPA-209ENST00000448940 Q8NDZ9 215 aa3.19□□□□□ -1.9
CDC42BPA-209ENST00000448940 KRTAP11-1Q8IUC1 163 aa3.18□□□□□ -1.9
CDC42BPA-209ENST00000448940 RPL37P61927 97 aaKnown RBP3.18□□□□□ -1.9
CDC42BPA-209ENST00000448940 KRTAP3-3Q9BYR6 98 aa3.17□□□□□ -1.9
CDC42BPA-209ENST00000448940 KRTAP3-2Q9BYR7 98 aa3.17□□□□□ -1.9
CDC42BPA-209ENST00000448940 Q5XG85 94 aa3.16□□□□□ -1.9
CDC42BPA-209ENST00000448940 ADM2Q7Z4H4 148 aa3.16□□□□□ -1.9
CDC42BPA-209ENST00000448940 SMCPP49901 116 aaPredicted RBP3.16□□□□□ -1.9
CDC42BPA-209ENST00000448940 KRTAP10-8P60410 259 aa3.15□□□□□ -1.9
CDC42BPA-209ENST00000448940 KRTAP4-16G5E9R7 235 aaPredicted RBP3.15□□□□□ -1.91
CDC42BPA-209ENST00000448940 Q5W150 140 aa3.14□□□□□ -1.91
CDC42BPA-209ENST00000448940 DNHD1Q96M86 4753 aa3.14□□□□□ -1.91
CDC42BPA-209ENST00000448940 KRTAP1-4P0C5Y4 121 aa3.14□□□□□ -1.91
CDC42BPA-209ENST00000448940 KRTAP13-1Q8IUC0 172 aa3.14□□□□□ -1.91
CDC42BPA-209ENST00000448940 KRTAP7-1Q8IUC3 87 aa3.12□□□□□ -1.91
CDC42BPA-209ENST00000448940 CSMD1Q96PZ7 3565 aa3.12□□□□□ -1.91
CDC42BPA-209ENST00000448940 LINC00472Q9H8W2 130 aa3.11□□□□□ -1.91
CDC42BPA-209ENST00000448940 Q5VV11 94 aa3.11□□□□□ -1.91
CDC42BPA-209ENST00000448940 XP32Q5T750 250 aa3.11□□□□□ -1.91
CDC42BPA-209ENST00000448940 A8MUU9 505 aa3.09□□□□□ -1.91
CDC42BPA-209ENST00000448940 C10orf95Q9H7T3 257 aa3.09□□□□□ -1.91
CDC42BPA-209ENST00000448940 KRTAP4-5Q9BYR2 181 aa3.09□□□□□ -1.92
CDC42BPA-209ENST00000448940 MMP24-AS1A0A0U1RRL7 71 aa3.08□□□□□ -1.92
CDC42BPA-209ENST00000448940 BSNQ9UPA5 3926 aa3.07□□□□□ -1.92
CDC42BPA-209ENST00000448940 KRTAP13-3Q3SY46 172 aa3.06□□□□□ -1.92
CDC42BPA-209ENST00000448940 KRTAP23-1A1A580 65 aa3.06□□□□□ -1.92
CDC42BPA-209ENST00000448940 TRRAPQ9Y4A5 3859 aa3.04□□□□□ -1.92
CDC42BPA-209ENST00000448940 A6NN06 94 aa3.04□□□□□ -1.92
CDC42BPA-209ENST00000448940 ANK3Q12955 4377 aaKnown RBP3.03□□□□□ -1.92
CDC42BPA-209ENST00000448940 LORP23490 312 aaPredicted RBP3.01□□□□□ -1.93
CDC42BPA-209ENST00000448940 MT1HL1P0DM35 61 aa2.99□□□□□ -1.93
CDC42BPA-209ENST00000448940 NOTCH2NLQ7Z3S9 236 aa2.97□□□□□ -1.93
CDC42BPA-209ENST00000448940 CUBNO60494 3623 aa2.94□□□□□ -1.94
CDC42BPA-209ENST00000448940 KRTAP17-1Q9BYP8 105 aa2.93□□□□□ -1.94
CDC42BPA-209ENST00000448940 TNP1P09430 55 aa2.92□□□□□ -1.94
CDC42BPA-209ENST00000448940 AKAP9Q99996 3911 aa2.88□□□□□ -1.95
CDC42BPA-209ENST00000448940 LCE2DQ5TA82 110 aaPredicted RBP2.88□□□□□ -1.95
CDC42BPA-209ENST00000448940 KRTAP10-4P60372 401 aaPredicted RBP2.87□□□□□ -1.95
CDC42BPA-209ENST00000448940 BIRC6Q9NR09 4857 aa2.86□□□□□ -1.95
CDC42BPA-209ENST00000448940 CYSTM1Q9H1C7 97 aa2.86□□□□□ -1.95
CDC42BPA-209ENST00000448940 ZNF469Q96JG9 3925 aaPredicted RBP2.85□□□□□ -1.95
CDC42BPA-209ENST00000448940 VPS13CQ709C8 3753 aa2.84□□□□□ -1.96
CDC42BPA-209ENST00000448940 A8MU10 97 aa2.84□□□□□ -1.96
CDC42BPA-209ENST00000448940 SVEP1Q4LDE5 3571 aa2.83□□□□□ -1.96
CDC42BPA-209ENST00000448940 KIAA1109Q2LD37 5005 aa2.81□□□□□ -1.96
CDC42BPA-209ENST00000448940 DNAH11Q96DT5 4516 aa2.8□□□□□ -1.96
CDC42BPA-209ENST00000448940 RYR1P21817 5038 aa2.79□□□□□ -1.96
CDC42BPA-209ENST00000448940 PLECQ15149 4684 aaKnown RBP2.79□□□□□ -1.96
CDC42BPA-209ENST00000448940 ALMS1Q8TCU4 4167 aa2.78□□□□□ -1.96
CDC42BPA-209ENST00000448940 H0YAA0 97 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms