RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ZNF861PO60384 105 aa8.56□□□□□ -1.04
LIMD1-202ENST00000440097 CIRBP-AS1Q8TBR5 109 aa8.56□□□□□ -1.04
LIMD1-202ENST00000440097 ANAPC11Q9NYG5 84 aa8.56□□□□□ -1.04
LIMD1-202ENST00000440097 ZNF706Q9Y5V0 76 aaPredicted RBP8.56□□□□□ -1.04
LIMD1-202ENST00000440097 FAT2Q9NYQ8 4349 aa8.53□□□□□ -1.04
LIMD1-202ENST00000440097 A8MWP4 228 aa8.53□□□□□ -1.04
LIMD1-202ENST00000440097 ALMS1Q8TCU4 4167 aa8.52□□□□□ -1.04
LIMD1-202ENST00000440097 SPTSSBQ8NFR3 76 aa8.52□□□□□ -1.05
LIMD1-202ENST00000440097 IGLV7-43P04211 117 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 KRTAP10-1P60331 282 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 CD164Q04900 197 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 COA5Q86WW8 74 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 MOBPQ13875 183 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 LINC00472Q9H8W2 130 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 RYR3Q15413 4870 aa8.51□□□□□ -1.05
LIMD1-202ENST00000440097 LCA10Q71F78 164 aa8.5□□□□□ -1.05
LIMD1-202ENST00000440097 Q75L30 129 aa8.49□□□□□ -1.05
LIMD1-202ENST00000440097 LRP1BQ9NZR2 4599 aa8.49□□□□□ -1.05
LIMD1-202ENST00000440097 A6NED7 52 aa8.49□□□□□ -1.05
LIMD1-202ENST00000440097 LINC00483Q53H64 154 aa8.49□□□□□ -1.05
LIMD1-202ENST00000440097 PKD1P98161 4303 aa8.48□□□□□ -1.05
LIMD1-202ENST00000440097 KTN1-AS1Q86SY8 53 aa8.47□□□□□ -1.05
LIMD1-202ENST00000440097 IGLV7-46A0A075B6I9 117 aa8.47□□□□□ -1.05
LIMD1-202ENST00000440097 MMP24-AS1A0A0U1RRL7 71 aa8.46□□□□□ -1.05
LIMD1-202ENST00000440097 LOC101927531A0A1B0GV80 90 aa8.46□□□□□ -1.05
LIMD1-202ENST00000440097 PCOTHQ58A44 107 aa8.46□□□□□ -1.06
LIMD1-202ENST00000440097 ATP11AUNQ6ZP68 121 aa8.45□□□□□ -1.06
LIMD1-202ENST00000440097 RYR2Q92736 4967 aa8.44□□□□□ -1.06
LIMD1-202ENST00000440097 Q6ZSA8 131 aa8.44□□□□□ -1.06
LIMD1-202ENST00000440097 SPAG11AQ6PDA7 123 aa8.4□□□□□ -1.06
LIMD1-202ENST00000440097 A6NN06 94 aa8.4□□□□□ -1.06
LIMD1-202ENST00000440097 RBM12B-AS1Q9P1G2 102 aa8.4□□□□□ -1.06
LIMD1-202ENST00000440097 CDC42SE1Q9NRR8 79 aa8.39□□□□□ -1.07
LIMD1-202ENST00000440097 H3BS24 57 aa8.39□□□□□ -1.07
LIMD1-202ENST00000440097 LINC01558Q9Y6Z2 57 aa8.37□□□□□ -1.07
LIMD1-202ENST00000440097 FAT1Q14517 4588 aa8.36□□□□□ -1.07
LIMD1-202ENST00000440097 NDUFS5O43920 106 aa8.35□□□□□ -1.07
LIMD1-202ENST00000440097 TP53AIP1Q9HCN2 124 aa8.34□□□□□ -1.07
LIMD1-202ENST00000440097 VPS13BQ7Z7G8 4022 aa8.34□□□□□ -1.07
LIMD1-202ENST00000440097 Q96NJ1 140 aa8.34□□□□□ -1.07
LIMD1-202ENST00000440097 DYNC1H1Q14204 4646 aaKnown RBP8.34□□□□□ -1.07
LIMD1-202ENST00000440097 ASB16-AS1Q495Z4 193 aa8.33□□□□□ -1.08
LIMD1-202ENST00000440097 CDK2AP2O75956 126 aa8.33□□□□□ -1.08
LIMD1-202ENST00000440097 SPINK6Q6UWN8 80 aa8.32□□□□□ -1.08
LIMD1-202ENST00000440097 C8orf17Q9NRJ1 99 aa8.32□□□□□ -1.08
LIMD1-202ENST00000440097 HRES1P13985 223 aa8.32□□□□□ -1.08
LIMD1-202ENST00000440097 SPINK7P58062 85 aa8.32□□□□□ -1.08
LIMD1-202ENST00000440097 A0A087X002 238 aa8.31□□□□□ -1.08
LIMD1-202ENST00000440097 SMR3BP02814 79 aaPredicted RBP8.3□□□□□ -1.08
LIMD1-202ENST00000440097 IGHV6-1A0A0B4J1U7 121 aa8.29□□□□□ -1.08
LIMD1-202ENST00000440097 SSBP3-AS1Q7Z2R9 100 aa8.29□□□□□ -1.08
LIMD1-202ENST00000440097 C7orf65Q6ZTY9 151 aa8.28□□□□□ -1.08
LIMD1-202ENST00000440097 A0A1B0GVX0 72 aa8.25□□□□□ -1.09
LIMD1-202ENST00000440097 PLA2G1BP04054 148 aaKnown RBP8.25□□□□□ -1.09
LIMD1-202ENST00000440097 KRTAP13-2Q52LG2 175 aa8.25□□□□□ -1.09
LIMD1-202ENST00000440097 EPPK1P58107 5090 aaKnown RBP8.24□□□□□ -1.09
LIMD1-202ENST00000440097 MRPL34Q9BQ48 92 aaKnown RBP8.23□□□□□ -1.09
LIMD1-202ENST00000440097 NOTCH2NLQ7Z3S9 236 aa8.22□□□□□ -1.09
LIMD1-202ENST00000440097 PRR26Q8N8Z3 221 aa8.21□□□□□ -1.1
LIMD1-202ENST00000440097 KRTAP1-4P0C5Y4 121 aa8.21□□□□□ -1.1
LIMD1-202ENST00000440097 A0A1B0GVY2 172 aa8.2□□□□□ -1.1
LIMD1-202ENST00000440097 APOBP04114 4563 aaKnown RBP8.19□□□□□ -1.1
LIMD1-202ENST00000440097 TYMSOSQ8TAI1 123 aa8.18□□□□□ -1.1
LIMD1-202ENST00000440097 FLG2Q5D862 2391 aaPredicted RBP8.18□□□□□ -1.1
LIMD1-202ENST00000440097 KIAA1109Q2LD37 5005 aa8.16□□□□□ -1.1
LIMD1-202ENST00000440097 Q5W150 140 aa8.15□□□□□ -1.11
LIMD1-202ENST00000440097 LINC00313P59037 77 aa8.11□□□□□ -1.11
LIMD1-202ENST00000440097 KRTAP13-3Q3SY46 172 aa8.1□□□□□ -1.11
LIMD1-202ENST00000440097 PRAC1Q96KF2 57 aa8.1□□□□□ -1.11
LIMD1-202ENST00000440097 ACYP2P14621 99 aa8.09□□□□□ -1.11
LIMD1-202ENST00000440097 SPINK1P00995 79 aa8.06□□□□□ -1.12
LIMD1-202ENST00000440097 LINC00304Q8N9R0 145 aa8.05□□□□□ -1.12
LIMD1-202ENST00000440097 ADM2Q7Z4H4 148 aa8.05□□□□□ -1.12
LIMD1-202ENST00000440097 LRP1Q07954 4544 aaKnown RBP8.04□□□□□ -1.12
LIMD1-202ENST00000440097 C8orf87E5RJ46 101 aa8.04□□□□□ -1.12
LIMD1-202ENST00000440097 MYCBP2O75592 4640 aa8.02□□□□□ -1.13
LIMD1-202ENST00000440097 DMAC1Q96GE9 116 aa8.02□□□□□ -1.13
LIMD1-202ENST00000440097 HSPG2P98160 4391 aa8.02□□□□□ -1.13
LIMD1-202ENST00000440097 A0A1B0GU69 56 aa8.01□□□□□ -1.13
LIMD1-202ENST00000440097 FAM229AH3BQW9 127 aa7.99□□□□□ -1.13
LIMD1-202ENST00000440097 KRTAP10-4P60372 401 aaPredicted RBP7.99□□□□□ -1.13
LIMD1-202ENST00000440097 RETNLBQ9BQ08 111 aa7.99□□□□□ -1.13
LIMD1-202ENST00000440097 SPATA8Q6RVD6 105 aa7.96□□□□□ -1.13
LIMD1-202ENST00000440097 DMBT1Q9UGM3 2413 aaPredicted RBP7.95□□□□□ -1.14
LIMD1-202ENST00000440097 KRTAP17-1Q9BYP8 105 aa7.94□□□□□ -1.14
LIMD1-202ENST00000440097 RYR1P21817 5038 aa7.94□□□□□ -1.14
LIMD1-202ENST00000440097 MIR22HGQ0VDD5 57 aa7.92□□□□□ -1.14
LIMD1-202ENST00000440097 Q5VSD8 79 aa7.91□□□□□ -1.14
LIMD1-202ENST00000440097 IGKV2-30P06310 120 aa7.9□□□□□ -1.14
LIMD1-202ENST00000440097 RPS29P62273 56 aaKnown RBP7.9□□□□□ -1.14
LIMD1-202ENST00000440097 LINC01554Q52M75 96 aa7.9□□□□□ -1.14
LIMD1-202ENST00000440097 UQCR11O14957 56 aa7.89□□□□□ -1.15
LIMD1-202ENST00000440097 PKHD1L1Q86WI1 4243 aa7.89□□□□□ -1.15
LIMD1-202ENST00000440097 KRTAP16-1A8MUX0 517 aa7.88□□□□□ -1.15
LIMD1-202ENST00000440097 C9orf92A6NGG3 77 aa7.85□□□□□ -1.15
LIMD1-202ENST00000440097 IGKV2D-30A0A075B6S6 120 aa7.81□□□□□ -1.16
LIMD1-202ENST00000440097 CSAG1Q6PB30 78 aa7.8□□□□□ -1.16
LIMD1-202ENST00000440097 FAT3Q8TDW7 4589 aa7.79□□□□□ -1.16
LIMD1-202ENST00000440097 Q8N1X5 172 aa7.78□□□□□ -1.16
LIMD1-202ENST00000440097 KRTAP4-5Q9BYR2 181 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms