RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 FP248Q71RG6 208 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-207ENST00000436724 PRR15Q8IV56 129 aa12.28□□□□□ -0.44
PTPRF-207ENST00000436724 HSPG2P98160 4391 aa12.28□□□□□ -0.44
PTPRF-207ENST00000436724 CD164Q04900 197 aa12.28□□□□□ -0.44
PTPRF-207ENST00000436724 A8MWP4 228 aa12.26□□□□□ -0.45
PTPRF-207ENST00000436724 PRR26Q8N8Z3 221 aa12.26□□□□□ -0.45
PTPRF-207ENST00000436724 TYMSOSQ8TAI1 123 aa12.25□□□□□ -0.45
PTPRF-207ENST00000436724 CASC2Q6XLA1 102 aa12.22□□□□□ -0.45
PTPRF-207ENST00000436724 EPPK1P58107 5090 aaKnown RBP12.21□□□□□ -0.45
PTPRF-207ENST00000436724 CDK2AP2O75956 126 aa12.19□□□□□ -0.46
PTPRF-207ENST00000436724 RYR1P21817 5038 aa12.18□□□□□ -0.46
PTPRF-207ENST00000436724 FAM229AH3BQW9 127 aa12.18□□□□□ -0.46
PTPRF-207ENST00000436724 KIAA1109Q2LD37 5005 aa12.17□□□□□ -0.46
PTPRF-207ENST00000436724 NDUFB1O75438 58 aa12.16□□□□□ -0.46
PTPRF-207ENST00000436724 MP68P56378 58 aa12.15□□□□□ -0.47
PTPRF-207ENST00000436724 Q5VSD8 79 aa12.15□□□□□ -0.47
PTPRF-207ENST00000436724 KRTAP17-1Q9BYP8 105 aa12.15□□□□□ -0.47
PTPRF-207ENST00000436724 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
PTPRF-207ENST00000436724 IGHV6-1A0A0B4J1U7 121 aa12.12□□□□□ -0.47
PTPRF-207ENST00000436724 hDV103S1A0JD37 113 aa12.12□□□□□ -0.47
PTPRF-207ENST00000436724 C4orf48Q5BLP8 95 aa12.12□□□□□ -0.47
PTPRF-207ENST00000436724 LINC00208Q96KT6 92 aa12.12□□□□□ -0.47
PTPRF-207ENST00000436724 ASB16-AS1Q495Z4 193 aa12.11□□□□□ -0.47
PTPRF-207ENST00000436724 TRAV22A0A0B4J277 110 aa12.1□□□□□ -0.47
PTPRF-207ENST00000436724 A0A1B0GVX0 72 aa12.1□□□□□ -0.47
PTPRF-207ENST00000436724 C1orf64Q8NEQ6 169 aa12.1□□□□□ -0.47
PTPRF-207ENST00000436724 H0Y9P7 68 aa12.09□□□□□ -0.47
PTPRF-207ENST00000436724 C1orf195Q5TG92 126 aa12.09□□□□□ -0.47
PTPRF-207ENST00000436724 NOTCH2NLQ7Z3S9 236 aa12.08□□□□□ -0.48
PTPRF-207ENST00000436724 LINC00304Q8N9R0 145 aa12.08□□□□□ -0.48
PTPRF-207ENST00000436724 CYP4F30PQ9H0H9 118 aa12.08□□□□□ -0.48
PTPRF-207ENST00000436724 PKHD1L1Q86WI1 4243 aa12.07□□□□□ -0.48
PTPRF-207ENST00000436724 SPINK1P00995 79 aa12.06□□□□□ -0.48
PTPRF-207ENST00000436724 LRP1Q07954 4544 aaKnown RBP12.06□□□□□ -0.48
PTPRF-207ENST00000436724 PRR4Q16378 134 aa12.06□□□□□ -0.48
PTPRF-207ENST00000436724 LIMD2Q9BT23 127 aa12.06□□□□□ -0.48
PTPRF-207ENST00000436724 C8orf17Q9NRJ1 99 aa12.06□□□□□ -0.48
PTPRF-207ENST00000436724 H3BPC8 53 aa12.05□□□□□ -0.48
PTPRF-207ENST00000436724 MPLKIPQ8TAP9 179 aa12.05□□□□□ -0.48
PTPRF-207ENST00000436724 SPAG11AQ6PDA7 123 aa11.97□□□□□ -0.49
PTPRF-207ENST00000436724 SPANXA2-OT1Q8N9U9 137 aa11.95□□□□□ -0.5
PTPRF-207ENST00000436724 FLG2Q5D862 2391 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-207ENST00000436724 RPS29P62273 56 aaKnown RBP11.93□□□□□ -0.5
PTPRF-207ENST00000436724 Q8N1X5 172 aa11.92□□□□□ -0.5
PTPRF-207ENST00000436724 TP53AIP1Q9HCN2 124 aa11.92□□□□□ -0.5
PTPRF-207ENST00000436724 TNXBP22105 4242 aa11.91□□□□□ -0.5
PTPRF-207ENST00000436724 MRPL34Q9BQ48 92 aaKnown RBP11.91□□□□□ -0.5
PTPRF-207ENST00000436724 Q1T7F1 81 aa11.89□□□□□ -0.51
PTPRF-207ENST00000436724 MYCBP2O75592 4640 aa11.89□□□□□ -0.51
PTPRF-207ENST00000436724 NDUFS5O43920 106 aa11.88□□□□□ -0.51
PTPRF-207ENST00000436724 LINC00313P59037 77 aa11.87□□□□□ -0.51
PTPRF-207ENST00000436724 FAT3Q8TDW7 4589 aa11.86□□□□□ -0.51
PTPRF-207ENST00000436724 PRO0628Q9UI54 55 aa11.86□□□□□ -0.51
PTPRF-207ENST00000436724 C8orf87E5RJ46 101 aa11.85□□□□□ -0.51
PTPRF-207ENST00000436724 KRTAP10-8P60410 259 aa11.85□□□□□ -0.51
PTPRF-207ENST00000436724 RETNLBQ9BQ08 111 aa11.83□□□□□ -0.52
PTPRF-207ENST00000436724 IGLV7-46A0A075B6I9 117 aa11.81□□□□□ -0.52
PTPRF-207ENST00000436724 PCOTHQ58A44 107 aa11.79□□□□□ -0.52
PTPRF-207ENST00000436724 BRK1Q8WUW1 75 aa11.78□□□□□ -0.52
PTPRF-207ENST00000436724 KRTAP16-1A8MUX0 517 aa11.77□□□□□ -0.53
PTPRF-207ENST00000436724 KRTAP4-5Q9BYR2 181 aa11.75□□□□□ -0.53
PTPRF-207ENST00000436724 DMBT1Q9UGM3 2413 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-207ENST00000436724 PSPHP1O15172 72 aa11.73□□□□□ -0.53
PTPRF-207ENST00000436724 Q8N9P0 234 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-207ENST00000436724 Q5W150 140 aa11.71□□□□□ -0.54
PTPRF-207ENST00000436724 MT1HL1P0DM35 61 aa11.7□□□□□ -0.54
PTPRF-207ENST00000436724 COA5Q86WW8 74 aa11.69□□□□□ -0.54
PTPRF-207ENST00000436724 V9GYY9 64 aa11.68□□□□□ -0.54
PTPRF-207ENST00000436724 C9orf92A6NGG3 77 aa11.67□□□□□ -0.54
PTPRF-207ENST00000436724 KRTAP13-3Q3SY46 172 aa11.67□□□□□ -0.54
PTPRF-207ENST00000436724 A8MUN3 132 aa11.66□□□□□ -0.54
PTPRF-207ENST00000436724 LOC101927531A0A1B0GV80 90 aa11.61□□□□□ -0.55
PTPRF-207ENST00000436724 Q5VV11 94 aa11.6□□□□□ -0.55
PTPRF-207ENST00000436724 HRES1P13985 223 aa11.56□□□□□ -0.56
PTPRF-207ENST00000436724 BIRC6Q9NR09 4857 aa11.56□□□□□ -0.56
PTPRF-207ENST00000436724 ABCA13Q86UQ4 5058 aa11.55□□□□□ -0.56
PTPRF-207ENST00000436724 PRR15LQ9BU68 103 aa11.51□□□□□ -0.57
PTPRF-207ENST00000436724 HERC2O95714 4834 aa11.48□□□□□ -0.57
PTPRF-207ENST00000436724 C20orf166-AS1Q96NR2 134 aa11.47□□□□□ -0.57
PTPRF-207ENST00000436724 A8MUU9 505 aa11.45□□□□□ -0.58
PTPRF-207ENST00000436724 CHKB-CPT1BH3BT56 60 aa11.45□□□□□ -0.58
PTPRF-207ENST00000436724 LINC01558Q9Y6Z2 57 aa11.44□□□□□ -0.58
PTPRF-207ENST00000436724 A8MU10 97 aa11.42□□□□□ -0.58
PTPRF-207ENST00000436724 Q75L30 129 aa11.41□□□□□ -0.58
PTPRF-207ENST00000436724 IGKV2-30P06310 120 aa11.41□□□□□ -0.58
PTPRF-207ENST00000436724 IGKV2D-30A0A075B6S6 120 aa11.39□□□□□ -0.59
PTPRF-207ENST00000436724 ACYP2P14621 99 aa11.35□□□□□ -0.59
PTPRF-207ENST00000436724 DMAC1Q96GE9 116 aa11.33□□□□□ -0.6
PTPRF-207ENST00000436724 LCA10Q71F78 164 aa11.3□□□□□ -0.6
PTPRF-207ENST00000436724 XP32Q5T750 250 aa11.3□□□□□ -0.6
PTPRF-207ENST00000436724 A6NED7 52 aa11.28□□□□□ -0.6
PTPRF-207ENST00000436724 J3QL48 77 aa11.27□□□□□ -0.61
PTPRF-207ENST00000436724 C7orf65Q6ZTY9 151 aa11.24□□□□□ -0.61
PTPRF-207ENST00000436724 LPAP08519 4548 aa11.23□□□□□ -0.61
PTPRF-207ENST00000436724 RPL37P61927 97 aaKnown RBP11.21□□□□□ -0.62
PTPRF-207ENST00000436724 SPINK7P58062 85 aa11.19□□□□□ -0.62
PTPRF-207ENST00000436724 ATP11AUNQ6ZP68 121 aa11.18□□□□□ -0.62
PTPRF-207ENST00000436724 CDC42SE1Q9NRR8 79 aa11.18□□□□□ -0.62
PTPRF-207ENST00000436724 LRP2P98164 4655 aa11.17□□□□□ -0.62
PTPRF-207ENST00000436724 TPRXLQ17RH7 258 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms