RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 A0A1B0GVX0 72 aa7.91□□□□□ -1.14
SF3B1-204ENST00000414963 PRR4Q16378 134 aa7.91□□□□□ -1.14
SF3B1-204ENST00000414963 K7EQZ3 153 aa7.89□□□□□ -1.15
SF3B1-204ENST00000414963 IGHV6-1A0A0B4J1U7 121 aa7.87□□□□□ -1.15
SF3B1-204ENST00000414963 C8orf87E5RJ46 101 aa7.87□□□□□ -1.15
SF3B1-204ENST00000414963 Q8N9L7 120 aa7.87□□□□□ -1.15
SF3B1-204ENST00000414963 HERC1Q15751 4861 aa7.86□□□□□ -1.15
SF3B1-204ENST00000414963 TPRXLQ17RH7 258 aa7.86□□□□□ -1.15
SF3B1-204ENST00000414963 KRTAP13-3Q3SY46 172 aa7.86□□□□□ -1.15
SF3B1-204ENST00000414963 LINC00313P59037 77 aa7.85□□□□□ -1.15
SF3B1-204ENST00000414963 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.15
SF3B1-204ENST00000414963 C8orf17Q9NRJ1 99 aa7.84□□□□□ -1.15
SF3B1-204ENST00000414963 IMUPQ9GZP8 106 aa7.83□□□□□ -1.16
SF3B1-204ENST00000414963 MT-ATP8P03928 68 aa7.82□□□□□ -1.16
SF3B1-204ENST00000414963 MMP24-AS1A0A0U1RRL7 71 aa7.81□□□□□ -1.16
SF3B1-204ENST00000414963 KRTAP16-1A8MUX0 517 aa7.8□□□□□ -1.16
SF3B1-204ENST00000414963 HIST1H4AP62805 103 aaKnown RBP7.8□□□□□ -1.16
SF3B1-204ENST00000414963 C9orf92A6NGG3 77 aa7.79□□□□□ -1.16
SF3B1-204ENST00000414963 HCG22E2RYF7 251 aa7.78□□□□□ -1.16
SF3B1-204ENST00000414963 hDV103S1A0JD37 113 aa7.77□□□□□ -1.17
SF3B1-204ENST00000414963 CASC2Q6XLA1 102 aa7.76□□□□□ -1.17
SF3B1-204ENST00000414963 TMEM254Q8TBM7 123 aa7.76□□□□□ -1.17
SF3B1-204ENST00000414963 HMCN2Q8NDA2 5059 aa7.75□□□□□ -1.17
SF3B1-204ENST00000414963 A0A087WVE0 104 aa7.74□□□□□ -1.17
SF3B1-204ENST00000414963 XP32Q5T750 250 aa7.74□□□□□ -1.17
SF3B1-204ENST00000414963 C20orf166-AS1Q96NR2 134 aa7.74□□□□□ -1.17
SF3B1-204ENST00000414963 MRPL34Q9BQ48 92 aaKnown RBP7.74□□□□□ -1.17
SF3B1-204ENST00000414963 WFDC13Q8IUB5 93 aa7.73□□□□□ -1.17
SF3B1-204ENST00000414963 Q8N9P0 234 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-204ENST00000414963 A8MUU9 505 aa7.72□□□□□ -1.17
SF3B1-204ENST00000414963 Q75L30 129 aa7.71□□□□□ -1.18
SF3B1-204ENST00000414963 LPAP08519 4548 aa7.67□□□□□ -1.18
SF3B1-204ENST00000414963 RPL37P61927 97 aaKnown RBP7.67□□□□□ -1.18
SF3B1-204ENST00000414963 LCE2DQ5TA82 110 aaPredicted RBP7.64□□□□□ -1.19
SF3B1-204ENST00000414963 TP53AIP1Q9HCN2 124 aa7.63□□□□□ -1.19
SF3B1-204ENST00000414963 FAM236AA0A1B0GUQ0 79 aa7.62□□□□□ -1.19
SF3B1-204ENST00000414963 FAM236BA0A1B0GV22 79 aa7.62□□□□□ -1.19
SF3B1-204ENST00000414963 LRP2P98164 4655 aa7.61□□□□□ -1.19
SF3B1-204ENST00000414963 NDUFS5O43920 106 aa7.61□□□□□ -1.19
SF3B1-204ENST00000414963 SCGB1A1P11684 91 aa7.6□□□□□ -1.19
SF3B1-204ENST00000414963 ATP11AUNQ6ZP68 121 aa7.59□□□□□ -1.19
SF3B1-204ENST00000414963 OCR1Q9BZK8 76 aa7.59□□□□□ -1.19
SF3B1-204ENST00000414963 SEC61BP60468 96 aaKnown RBP7.58□□□□□ -1.2
SF3B1-204ENST00000414963 ZCCHC13Q8WW36 166 aaKnown RBP7.58□□□□□ -1.2
SF3B1-204ENST00000414963 UQCRQO14949 82 aa7.57□□□□□ -1.2
SF3B1-204ENST00000414963 SMIM20Q8N5G0 67 aa7.56□□□□□ -1.2
SF3B1-204ENST00000414963 ATOX1O00244 68 aa7.55□□□□□ -1.2
SF3B1-204ENST00000414963 Q5W150 140 aa7.55□□□□□ -1.2
SF3B1-204ENST00000414963 PCOTHQ58A44 107 aa7.54□□□□□ -1.2
SF3B1-204ENST00000414963 TRAV7A0A075B6U4 112 aa7.51□□□□□ -1.21
SF3B1-204ENST00000414963 MUC17Q685J3 4493 aa7.51□□□□□ -1.21
SF3B1-204ENST00000414963 TRAV22A0A0B4J277 110 aa7.49□□□□□ -1.21
SF3B1-204ENST00000414963 C5orf47Q569G3 176 aa7.49□□□□□ -1.21
SF3B1-204ENST00000414963 SERP2Q8N6R1 65 aa7.46□□□□□ -1.22
SF3B1-204ENST00000414963 H0Y9P7 68 aa7.45□□□□□ -1.22
SF3B1-204ENST00000414963 H3BPC8 53 aa7.42□□□□□ -1.22
SF3B1-204ENST00000414963 IGKV2-30P06310 120 aa7.42□□□□□ -1.22
SF3B1-204ENST00000414963 MP68P56378 58 aa7.42□□□□□ -1.22
SF3B1-204ENST00000414963 SPINK7P58062 85 aa7.42□□□□□ -1.22
SF3B1-204ENST00000414963 KRTAP4-1Q9BYQ7 146 aa7.41□□□□□ -1.22
SF3B1-204ENST00000414963 LOC101927531A0A1B0GV80 90 aa7.4□□□□□ -1.22
SF3B1-204ENST00000414963 C7orf65Q6ZTY9 151 aa7.39□□□□□ -1.23
SF3B1-204ENST00000414963 C1orf64Q8NEQ6 169 aa7.38□□□□□ -1.23
SF3B1-204ENST00000414963 LINC00208Q96KT6 92 aa7.38□□□□□ -1.23
SF3B1-204ENST00000414963 ANAPC13Q9BS18 74 aa7.38□□□□□ -1.23
SF3B1-204ENST00000414963 UBR4Q5T4S7 5183 aa7.38□□□□□ -1.23
SF3B1-204ENST00000414963 IGKV2D-30A0A075B6S6 120 aa7.37□□□□□ -1.23
SF3B1-204ENST00000414963 COX7CP15954 63 aa7.37□□□□□ -1.23
SF3B1-204ENST00000414963 CYP4F30PQ9H0H9 118 aa7.37□□□□□ -1.23
SF3B1-204ENST00000414963 A0A0U1RQV1 116 aa7.34□□□□□ -1.23
SF3B1-204ENST00000414963 HRES1P13985 223 aa7.32□□□□□ -1.24
SF3B1-204ENST00000414963 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
SF3B1-204ENST00000414963 MPLKIPQ8TAP9 179 aa7.3□□□□□ -1.24
SF3B1-204ENST00000414963 KLKP1Q107X0 134 aa7.29□□□□□ -1.24
SF3B1-204ENST00000414963 RNF213Q63HN8 5207 aa7.28□□□□□ -1.24
SF3B1-204ENST00000414963 SNURFQ9Y675 71 aa7.26□□□□□ -1.25
SF3B1-204ENST00000414963 MUC2Q02817 5179 aa7.25□□□□□ -1.25
SF3B1-204ENST00000414963 KRTAP19-2Q3LHN2 52 aa7.22□□□□□ -1.25
SF3B1-204ENST00000414963 RBM12B-AS1Q9P1G2 102 aa7.22□□□□□ -1.25
SF3B1-204ENST00000414963 CCDC179H3BU77 68 aa7.21□□□□□ -1.26
SF3B1-204ENST00000414963 C4orf26Q17RF5 130 aa7.21□□□□□ -1.26
SF3B1-204ENST00000414963 NDUFC1O43677 76 aa7.2□□□□□ -1.26
SF3B1-204ENST00000414963 COX6B2Q6YFQ2 88 aa7.2□□□□□ -1.26
SF3B1-204ENST00000414963 CYSTM1Q9H1C7 97 aa7.16□□□□□ -1.26
SF3B1-204ENST00000414963 KRTAP3-1Q9BYR8 98 aa7.15□□□□□ -1.26
SF3B1-204ENST00000414963 H7BZZ5 65 aa7.14□□□□□ -1.27
SF3B1-204ENST00000414963 LCE2CQ5TA81 110 aa7.14□□□□□ -1.27
SF3B1-204ENST00000414963 SPANXA2-OT1Q8N9U9 137 aa7.14□□□□□ -1.27
SF3B1-204ENST00000414963 FAM236DA0A1B0GTK5 79 aa7.12□□□□□ -1.27
SF3B1-204ENST00000414963 FAM236CP0DP71 79 aa7.12□□□□□ -1.27
SF3B1-204ENST00000414963 PCP4P48539 62 aa7.12□□□□□ -1.27
SF3B1-204ENST00000414963 A8MUN3 132 aa7.11□□□□□ -1.27
SF3B1-204ENST00000414963 H1FX-AS1Q4G0G2 97 aa7.1□□□□□ -1.27
SF3B1-204ENST00000414963 DMAC1Q96GE9 116 aa7.09□□□□□ -1.27
SF3B1-204ENST00000414963 FAT4Q6V0I7 4981 aa7.03□□□□□ -1.28
SF3B1-204ENST00000414963 FLGP20930 4061 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-204ENST00000414963 ACYP2P14621 99 aa7.01□□□□□ -1.29
SF3B1-204ENST00000414963 TMEM258P61165 79 aa6.99□□□□□ -1.29
SF3B1-204ENST00000414963 MT1HP80294 61 aa6.99□□□□□ -1.29
SF3B1-204ENST00000414963 ATP5EP56381 51 aaPredicted RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms