RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 KLKP1Q107X0 134 aa7.96□□□□□ -1.13
LIMS1-204ENST00000409441 OCR1Q9BZK8 76 aa7.96□□□□□ -1.14
LIMS1-204ENST00000409441 ABCA13Q86UQ4 5058 aa7.95□□□□□ -1.14
LIMS1-204ENST00000409441 K7EQZ3 153 aa7.95□□□□□ -1.14
LIMS1-204ENST00000409441 PKHD1L1Q86WI1 4243 aa7.94□□□□□ -1.14
LIMS1-204ENST00000409441 OXTP01178 125 aa7.92□□□□□ -1.14
LIMS1-204ENST00000409441 FAM229BQ4G0N7 80 aa7.92□□□□□ -1.14
LIMS1-204ENST00000409441 PRR26Q8N8Z3 221 aa7.92□□□□□ -1.14
LIMS1-204ENST00000409441 LINC00472Q9H8W2 130 aa7.92□□□□□ -1.14
LIMS1-204ENST00000409441 HCG22E2RYF7 251 aa7.91□□□□□ -1.14
LIMS1-204ENST00000409441 J3KT08 172 aa7.91□□□□□ -1.14
LIMS1-204ENST00000409441 NDUFC1O43677 76 aa7.91□□□□□ -1.14
LIMS1-204ENST00000409441 A0A087X002 238 aa7.9□□□□□ -1.14
LIMS1-204ENST00000409441 IGLV9-49A0A0B4J1Y8 123 aa7.9□□□□□ -1.14
LIMS1-204ENST00000409441 KRTAP29-1A8MX34 341 aaPredicted RBP7.89□□□□□ -1.15
LIMS1-204ENST00000409441 SVIPQ8NHG7 77 aa7.89□□□□□ -1.15
LIMS1-204ENST00000409441 TMEM254Q8TBM7 123 aa7.89□□□□□ -1.15
LIMS1-204ENST00000409441 A8MWP4 228 aa7.88□□□□□ -1.15
LIMS1-204ENST00000409441 H7BZZ5 65 aa7.88□□□□□ -1.15
LIMS1-204ENST00000409441 KRTAP10-8P60410 259 aa7.88□□□□□ -1.15
LIMS1-204ENST00000409441 DEFB116Q30KQ4 102 aa7.88□□□□□ -1.15
LIMS1-204ENST00000409441 PCLOQ9Y6V0 5065 aa7.87□□□□□ -1.15
LIMS1-204ENST00000409441 RPS28P62857 69 aaKnown RBP7.87□□□□□ -1.15
LIMS1-204ENST00000409441 KRTAP13-2Q52LG2 175 aa7.87□□□□□ -1.15
LIMS1-204ENST00000409441 PRR15Q8IV56 129 aa7.87□□□□□ -1.15
LIMS1-204ENST00000409441 MYCBP2O75592 4640 aa7.86□□□□□ -1.15
LIMS1-204ENST00000409441 LRP1Q07954 4544 aaKnown RBP7.86□□□□□ -1.15
LIMS1-204ENST00000409441 SNURFQ9Y675 71 aa7.86□□□□□ -1.15
LIMS1-204ENST00000409441 A0A0U1RQV1 116 aa7.85□□□□□ -1.15
LIMS1-204ENST00000409441 MT1HL1P0DM35 61 aa7.85□□□□□ -1.15
LIMS1-204ENST00000409441 MOBPQ13875 183 aa7.85□□□□□ -1.15
LIMS1-204ENST00000409441 TYMSOSQ8TAI1 123 aa7.85□□□□□ -1.15
LIMS1-204ENST00000409441 FAM236DA0A1B0GTK5 79 aa7.84□□□□□ -1.15
LIMS1-204ENST00000409441 FAM236CP0DP71 79 aa7.84□□□□□ -1.15
LIMS1-204ENST00000409441 NDUFB1O75438 58 aa7.82□□□□□ -1.16
LIMS1-204ENST00000409441 FAT3Q8TDW7 4589 aa7.82□□□□□ -1.16
LIMS1-204ENST00000409441 ATP5EP56381 51 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-204ENST00000409441 Q96NJ1 140 aa7.81□□□□□ -1.16
LIMS1-204ENST00000409441 C5orf47Q569G3 176 aa7.81□□□□□ -1.16
LIMS1-204ENST00000409441 WFDC13Q8IUB5 93 aa7.81□□□□□ -1.16
LIMS1-204ENST00000409441 KRTAP4-7Q9BYR0 210 aa7.81□□□□□ -1.16
LIMS1-204ENST00000409441 CASC2Q6XLA1 102 aa7.8□□□□□ -1.16
LIMS1-204ENST00000409441 SSBP3-AS1Q7Z2R9 100 aa7.8□□□□□ -1.16
LIMS1-204ENST00000409441 CD164Q04900 197 aa7.79□□□□□ -1.16
LIMS1-204ENST00000409441 HRCT1Q6UXD1 115 aa7.78□□□□□ -1.16
LIMS1-204ENST00000409441 MMP24-AS1A0A0U1RRL7 71 aa7.77□□□□□ -1.17
LIMS1-204ENST00000409441 LCE1DQ5T752 114 aa7.77□□□□□ -1.17
LIMS1-204ENST00000409441 ZCCHC13Q8WW36 166 aaKnown RBP7.75□□□□□ -1.17
LIMS1-204ENST00000409441 LINC00304Q8N9R0 145 aa7.74□□□□□ -1.17
LIMS1-204ENST00000409441 SERP1Q9Y6X1 66 aa7.74□□□□□ -1.17
LIMS1-204ENST00000409441 DMBT1Q9UGM3 2413 aaPredicted RBP7.74□□□□□ -1.17
LIMS1-204ENST00000409441 TNXBP22105 4242 aa7.74□□□□□ -1.17
LIMS1-204ENST00000409441 A0A1B0GVX0 72 aa7.73□□□□□ -1.17
LIMS1-204ENST00000409441 H3BPC8 53 aa7.73□□□□□ -1.17
LIMS1-204ENST00000409441 MP68P56378 58 aa7.73□□□□□ -1.17
LIMS1-204ENST00000409441 ASB16-AS1Q495Z4 193 aa7.73□□□□□ -1.17
LIMS1-204ENST00000409441 hDV103S1A0JD37 113 aa7.72□□□□□ -1.17
LIMS1-204ENST00000409441 SPAG11AQ6PDA7 123 aa7.72□□□□□ -1.17
LIMS1-204ENST00000409441 C8orf17Q9NRJ1 99 aa7.71□□□□□ -1.17
LIMS1-204ENST00000409441 SPINK1P00995 79 aa7.69□□□□□ -1.18
LIMS1-204ENST00000409441 TP53AIP1Q9HCN2 124 aa7.68□□□□□ -1.18
LIMS1-204ENST00000409441 H0Y9P7 68 aa7.67□□□□□ -1.18
LIMS1-204ENST00000409441 Q5XG85 94 aa7.67□□□□□ -1.18
LIMS1-204ENST00000409441 IGHV6-1A0A0B4J1U7 121 aa7.66□□□□□ -1.18
LIMS1-204ENST00000409441 TRAV22A0A0B4J277 110 aa7.64□□□□□ -1.19
LIMS1-204ENST00000409441 LINC00208Q96KT6 92 aa7.64□□□□□ -1.19
LIMS1-204ENST00000409441 MRPL34Q9BQ48 92 aaKnown RBP7.63□□□□□ -1.19
LIMS1-204ENST00000409441 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
LIMS1-204ENST00000409441 C8orf87E5RJ46 101 aa7.62□□□□□ -1.19
LIMS1-204ENST00000409441 C1orf64Q8NEQ6 169 aa7.6□□□□□ -1.19
LIMS1-204ENST00000409441 LIMD2Q9BT23 127 aa7.6□□□□□ -1.19
LIMS1-204ENST00000409441 CYP4F30PQ9H0H9 118 aa7.6□□□□□ -1.19
LIMS1-204ENST00000409441 SMIM26A0A096LP01 95 aa7.59□□□□□ -1.19
LIMS1-204ENST00000409441 SPANXA2-OT1Q8N9U9 137 aa7.58□□□□□ -1.2
LIMS1-204ENST00000409441 RETNLBQ9BQ08 111 aa7.57□□□□□ -1.2
LIMS1-204ENST00000409441 KRTAP4-9Q9BYQ8 210 aa7.57□□□□□ -1.2
LIMS1-204ENST00000409441 NDUFS5O43920 106 aa7.56□□□□□ -1.2
LIMS1-204ENST00000409441 C1orf195Q5TG92 126 aa7.56□□□□□ -1.2
LIMS1-204ENST00000409441 NOTCH2NLQ7Z3S9 236 aa7.56□□□□□ -1.2
LIMS1-204ENST00000409441 HERC1Q15751 4861 aa7.56□□□□□ -1.2
LIMS1-204ENST00000409441 PRR4Q16378 134 aa7.52□□□□□ -1.2
LIMS1-204ENST00000409441 LINC00313P59037 77 aa7.51□□□□□ -1.21
LIMS1-204ENST00000409441 FP248Q71RG6 208 aaPredicted RBP7.49□□□□□ -1.21
LIMS1-204ENST00000409441 IGLV7-46A0A075B6I9 117 aa7.48□□□□□ -1.21
LIMS1-204ENST00000409441 LOC101927531A0A1B0GV80 90 aa7.47□□□□□ -1.21
LIMS1-204ENST00000409441 KRTAP13-3Q3SY46 172 aa7.46□□□□□ -1.21
LIMS1-204ENST00000409441 Q8N9P0 234 aaPredicted RBP7.46□□□□□ -1.21
LIMS1-204ENST00000409441 KRTAP4-2Q9BYR5 136 aa7.45□□□□□ -1.22
LIMS1-204ENST00000409441 C4orf26Q17RF5 130 aa7.45□□□□□ -1.22
LIMS1-204ENST00000409441 KRTAP16-1A8MUX0 517 aa7.42□□□□□ -1.22
LIMS1-204ENST00000409441 Q5W150 140 aa7.42□□□□□ -1.22
LIMS1-204ENST00000409441 PCOTHQ58A44 107 aa7.41□□□□□ -1.22
LIMS1-204ENST00000409441 HMCN2Q8NDA2 5059 aa7.38□□□□□ -1.23
LIMS1-204ENST00000409441 TPRXLQ17RH7 258 aa7.38□□□□□ -1.23
LIMS1-204ENST00000409441 Q1T7F1 81 aa7.37□□□□□ -1.23
LIMS1-204ENST00000409441 MPLKIPQ8TAP9 179 aa7.35□□□□□ -1.23
LIMS1-204ENST00000409441 C9orf92A6NGG3 77 aa7.34□□□□□ -1.24
LIMS1-204ENST00000409441 V9GYY9 64 aa7.34□□□□□ -1.24
LIMS1-204ENST00000409441 COA5Q86WW8 74 aa7.33□□□□□ -1.24
LIMS1-204ENST00000409441 IGKV2-30P06310 120 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms