RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 UBL5Q9BZL1 73 aa5.82□□□□□ -1.48
NEDD8-202ENST00000396828 LINC00846Q9NV44 126 aa5.81□□□□□ -1.48
NEDD8-202ENST00000396828 RPS29P62273 56 aaKnown RBP5.8□□□□□ -1.48
NEDD8-202ENST00000396828 NREPQ16612 68 aa5.8□□□□□ -1.48
NEDD8-202ENST00000396828 KRTAP13-3Q3SY46 172 aa5.8□□□□□ -1.48
NEDD8-202ENST00000396828 Q5XG85 94 aa5.78□□□□□ -1.48
NEDD8-202ENST00000396828 Q6ZVQ6 151 aa5.77□□□□□ -1.49
NEDD8-202ENST00000396828 FP248Q71RG6 208 aaPredicted RBP5.77□□□□□ -1.49
NEDD8-202ENST00000396828 ASB16-AS1Q495Z4 193 aa5.76□□□□□ -1.49
NEDD8-202ENST00000396828 LINC00643Q86TS7 51 aa5.74□□□□□ -1.49
NEDD8-202ENST00000396828 J3KT08 172 aa5.73□□□□□ -1.49
NEDD8-202ENST00000396828 BPY2O14599 106 aa5.73□□□□□ -1.49
NEDD8-202ENST00000396828 ATP5EP2Q5VTU8 51 aa5.73□□□□□ -1.49
NEDD8-202ENST00000396828 SIGMAR1Q99720 223 aa5.73□□□□□ -1.49
NEDD8-202ENST00000396828 LINC00472Q9H8W2 130 aa5.73□□□□□ -1.49
NEDD8-202ENST00000396828 IGKV4-1P06312 121 aa5.71□□□□□ -1.5
NEDD8-202ENST00000396828 CXCL6P80162 114 aa5.71□□□□□ -1.5
NEDD8-202ENST00000396828 DEFB116Q30KQ4 102 aa5.71□□□□□ -1.5
NEDD8-202ENST00000396828 Q96NJ1 140 aa5.71□□□□□ -1.5
NEDD8-202ENST00000396828 C1orf195Q5TG92 126 aa5.7□□□□□ -1.5
NEDD8-202ENST00000396828 NDUFB1O75438 58 aa5.69□□□□□ -1.5
NEDD8-202ENST00000396828 IGKV3D-7A0A0C4DH55 119 aa5.68□□□□□ -1.5
NEDD8-202ENST00000396828 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
NEDD8-202ENST00000396828 XP32Q5T750 250 aa5.68□□□□□ -1.5
NEDD8-202ENST00000396828 A8MWP4 228 aa5.67□□□□□ -1.5
NEDD8-202ENST00000396828 KRTAP19-2Q3LHN2 52 aa5.67□□□□□ -1.5
NEDD8-202ENST00000396828 FSIP2Q5CZC0 6907 aa5.66□□□□□ -1.5
NEDD8-202ENST00000396828 DSCR10P59022 87 aa5.65□□□□□ -1.5
NEDD8-202ENST00000396828 HIST1H4AP62805 103 aaKnown RBP5.65□□□□□ -1.5
NEDD8-202ENST00000396828 IGHV6-1A0A0B4J1U7 121 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 A0A1B0GVX0 72 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 K7EQZ3 153 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 MT-ATP8P03928 68 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 PRR15Q8IV56 129 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 Q8N9L7 120 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 IMUPQ9GZP8 106 aa5.63□□□□□ -1.51
NEDD8-202ENST00000396828 CRCT1Q9UGL9 99 aa5.62□□□□□ -1.51
NEDD8-202ENST00000396828 C8orf87E5RJ46 101 aa5.6□□□□□ -1.51
NEDD8-202ENST00000396828 MT1HP80294 61 aa5.6□□□□□ -1.51
NEDD8-202ENST00000396828 PCOTHQ58A44 107 aa5.6□□□□□ -1.51
NEDD8-202ENST00000396828 C9orf92A6NGG3 77 aa5.59□□□□□ -1.51
NEDD8-202ENST00000396828 LINC00313P59037 77 aa5.59□□□□□ -1.51
NEDD8-202ENST00000396828 FLGP20930 4061 aaPredicted RBP5.59□□□□□ -1.51
NEDD8-202ENST00000396828 C8orf17Q9NRJ1 99 aa5.58□□□□□ -1.52
NEDD8-202ENST00000396828 HCG22E2RYF7 251 aa5.57□□□□□ -1.52
NEDD8-202ENST00000396828 A0A087WVE0 104 aa5.56□□□□□ -1.52
NEDD8-202ENST00000396828 CASC2Q6XLA1 102 aa5.56□□□□□ -1.52
NEDD8-202ENST00000396828 MMP24-AS1A0A0U1RRL7 71 aa5.55□□□□□ -1.52
NEDD8-202ENST00000396828 hDV103S1A0JD37 113 aa5.55□□□□□ -1.52
NEDD8-202ENST00000396828 WFDC13Q8IUB5 93 aa5.54□□□□□ -1.52
NEDD8-202ENST00000396828 NOTCH2NLQ7Z3S9 236 aa5.53□□□□□ -1.52
NEDD8-202ENST00000396828 TMEM254Q8TBM7 123 aa5.53□□□□□ -1.52
NEDD8-202ENST00000396828 SCGB1A1P11684 91 aa5.52□□□□□ -1.53
NEDD8-202ENST00000396828 MRPL34Q9BQ48 92 aaKnown RBP5.52□□□□□ -1.53
NEDD8-202ENST00000396828 FAM236AA0A1B0GUQ0 79 aa5.51□□□□□ -1.53
NEDD8-202ENST00000396828 FAM236BA0A1B0GV22 79 aa5.51□□□□□ -1.53
NEDD8-202ENST00000396828 KRTAP10-6P60371 365 aaPredicted RBP5.51□□□□□ -1.53
NEDD8-202ENST00000396828 NDUFS5O43920 106 aa5.49□□□□□ -1.53
NEDD8-202ENST00000396828 KRTAP16-1A8MUX0 517 aa5.48□□□□□ -1.53
NEDD8-202ENST00000396828 ATOX1O00244 68 aa5.46□□□□□ -1.54
NEDD8-202ENST00000396828 Q8N9P0 234 aaPredicted RBP5.46□□□□□ -1.54
NEDD8-202ENST00000396828 TP53AIP1Q9HCN2 124 aa5.46□□□□□ -1.54
NEDD8-202ENST00000396828 RPL37P61927 97 aaKnown RBP5.45□□□□□ -1.54
NEDD8-202ENST00000396828 SMIM20Q8N5G0 67 aa5.45□□□□□ -1.54
NEDD8-202ENST00000396828 C20orf166-AS1Q96NR2 134 aa5.45□□□□□ -1.54
NEDD8-202ENST00000396828 A8MUU9 505 aa5.44□□□□□ -1.54
NEDD8-202ENST00000396828 Q75L30 129 aa5.44□□□□□ -1.54
NEDD8-202ENST00000396828 M0R2T5 61 aa5.42□□□□□ -1.54
NEDD8-202ENST00000396828 UQCRQO14949 82 aa5.42□□□□□ -1.54
NEDD8-202ENST00000396828 ATP11AUNQ6ZP68 121 aa5.41□□□□□ -1.54
NEDD8-202ENST00000396828 OCR1Q9BZK8 76 aa5.41□□□□□ -1.54
NEDD8-202ENST00000396828 LOC100996750A0A140TA64 210 aa5.4□□□□□ -1.54
NEDD8-202ENST00000396828 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
NEDD8-202ENST00000396828 TRAV7A0A075B6U4 112 aa5.39□□□□□ -1.55
NEDD8-202ENST00000396828 COX6B2Q6YFQ2 88 aa5.39□□□□□ -1.55
NEDD8-202ENST00000396828 C5orf47Q569G3 176 aa5.38□□□□□ -1.55
NEDD8-202ENST00000396828 SERP2Q8N6R1 65 aa5.38□□□□□ -1.55
NEDD8-202ENST00000396828 ZCCHC13Q8WW36 166 aaKnown RBP5.38□□□□□ -1.55
NEDD8-202ENST00000396828 ANAPC13Q9BS18 74 aa5.38□□□□□ -1.55
NEDD8-202ENST00000396828 TRAV22A0A0B4J277 110 aa5.37□□□□□ -1.55
NEDD8-202ENST00000396828 MP68P56378 58 aa5.36□□□□□ -1.55
NEDD8-202ENST00000396828 H0Y9P7 68 aa5.35□□□□□ -1.55
NEDD8-202ENST00000396828 Q5W150 140 aa5.34□□□□□ -1.55
NEDD8-202ENST00000396828 USH2AO75445 5202 aa5.33□□□□□ -1.56
NEDD8-202ENST00000396828 H3BPC8 53 aa5.32□□□□□ -1.56
NEDD8-202ENST00000396828 COX7CP15954 63 aa5.32□□□□□ -1.56
NEDD8-202ENST00000396828 SSPOA2VEC9 5147 aa5.31□□□□□ -1.56
NEDD8-202ENST00000396828 LINC00208Q96KT6 92 aa5.31□□□□□ -1.56
NEDD8-202ENST00000396828 LOC101927531A0A1B0GV80 90 aa5.3□□□□□ -1.56
NEDD8-202ENST00000396828 C1orf64Q8NEQ6 169 aa5.3□□□□□ -1.56
NEDD8-202ENST00000396828 KRTAP9-8Q9BYQ0 159 aa5.29□□□□□ -1.56
NEDD8-202ENST00000396828 IGKV2D-30A0A075B6S6 120 aa5.28□□□□□ -1.56
NEDD8-202ENST00000396828 IGKV2-30P06310 120 aa5.28□□□□□ -1.56
NEDD8-202ENST00000396828 C20orf197Q8N268 126 aa5.28□□□□□ -1.56
NEDD8-202ENST00000396828 C7orf65Q6ZTY9 151 aa5.27□□□□□ -1.57
NEDD8-202ENST00000396828 SPINK7P58062 85 aa5.26□□□□□ -1.57
NEDD8-202ENST00000396828 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.25□□□□□ -1.57
NEDD8-202ENST00000396828 CYP4F30PQ9H0H9 118 aa5.25□□□□□ -1.57
NEDD8-202ENST00000396828 SNURFQ9Y675 71 aa5.24□□□□□ -1.57
NEDD8-202ENST00000396828 KRTAP9-7A8MTY7 169 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms