RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 A0A0G2JQZ4 141 aa3.84□□□□□ -1.8
LIMA1-202ENST00000394943 FAM240AA0A1B0GVK7 77 aa3.83□□□□□ -1.8
LIMA1-202ENST00000394943 C20orf166-AS1Q96NR2 134 aa3.83□□□□□ -1.8
LIMA1-202ENST00000394943 SMIM20Q8N5G0 67 aa3.83□□□□□ -1.8
LIMA1-202ENST00000394943 A8MUU9 505 aa3.82□□□□□ -1.8
LIMA1-202ENST00000394943 Q75L30 129 aa3.81□□□□□ -1.8
LIMA1-202ENST00000394943 A0A087WSZ3 146 aa3.81□□□□□ -1.8
LIMA1-202ENST00000394943 IGKV3D-7A0A0C4DH55 119 aa3.81□□□□□ -1.8
LIMA1-202ENST00000394943 C8orf87E5RJ46 101 aa3.8□□□□□ -1.8
LIMA1-202ENST00000394943 C14orf132Q9NPU4 83 aa3.8□□□□□ -1.8
LIMA1-202ENST00000394943 LRP2P98164 4655 aa3.79□□□□□ -1.8
LIMA1-202ENST00000394943 ACYP1P07311 99 aa3.79□□□□□ -1.8
LIMA1-202ENST00000394943 RPL37P61927 97 aaKnown RBP3.79□□□□□ -1.8
LIMA1-202ENST00000394943 HRCT1Q6UXD1 115 aa3.78□□□□□ -1.8
LIMA1-202ENST00000394943 RETNLBQ9BQ08 111 aa3.78□□□□□ -1.8
LIMA1-202ENST00000394943 A8MWP4 228 aa3.77□□□□□ -1.81
LIMA1-202ENST00000394943 Q8N9P0 234 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-202ENST00000394943 DSCR10P59022 87 aa3.77□□□□□ -1.81
LIMA1-202ENST00000394943 A0A1B0GVX0 72 aa3.77□□□□□ -1.81
LIMA1-202ENST00000394943 RNF213Q63HN8 5207 aa3.77□□□□□ -1.81
LIMA1-202ENST00000394943 FAM236AA0A1B0GUQ0 79 aa3.76□□□□□ -1.81
LIMA1-202ENST00000394943 FAM236BA0A1B0GV22 79 aa3.76□□□□□ -1.81
LIMA1-202ENST00000394943 PRR4Q16378 134 aa3.76□□□□□ -1.81
LIMA1-202ENST00000394943 CXCL6P80162 114 aa3.76□□□□□ -1.81
LIMA1-202ENST00000394943 KRTAP19-2Q3LHN2 52 aa3.75□□□□□ -1.81
LIMA1-202ENST00000394943 CCDC179H3BU77 68 aa3.75□□□□□ -1.81
LIMA1-202ENST00000394943 Q6ZVQ6 151 aa3.75□□□□□ -1.81
LIMA1-202ENST00000394943 PRR15Q8IV56 129 aa3.75□□□□□ -1.81
LIMA1-202ENST00000394943 UBR4Q5T4S7 5183 aa3.75□□□□□ -1.81
LIMA1-202ENST00000394943 LINC00846Q9NV44 126 aa3.74□□□□□ -1.81
LIMA1-202ENST00000394943 MMP24-AS1A0A0U1RRL7 71 aa3.73□□□□□ -1.81
LIMA1-202ENST00000394943 SEC61BP60468 96 aaKnown RBP3.73□□□□□ -1.81
LIMA1-202ENST00000394943 ATP5EP2Q5VTU8 51 aa3.73□□□□□ -1.81
LIMA1-202ENST00000394943 TMEM254Q8TBM7 123 aa3.73□□□□□ -1.81
LIMA1-202ENST00000394943 KRTAP4-1Q9BYQ7 146 aa3.73□□□□□ -1.81
LIMA1-202ENST00000394943 IGKV4-1P06312 121 aa3.72□□□□□ -1.81
LIMA1-202ENST00000394943 NREPQ16612 68 aa3.72□□□□□ -1.81
LIMA1-202ENST00000394943 A0A087WVE0 104 aa3.71□□□□□ -1.82
LIMA1-202ENST00000394943 C8orf17Q9NRJ1 99 aa3.71□□□□□ -1.82
LIMA1-202ENST00000394943 LINC00313P59037 77 aa3.71□□□□□ -1.82
LIMA1-202ENST00000394943 NOTCH2NLQ7Z3S9 236 aa3.71□□□□□ -1.82
LIMA1-202ENST00000394943 MPLKIPQ8TAP9 179 aa3.71□□□□□ -1.82
LIMA1-202ENST00000394943 FLGP20930 4061 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-202ENST00000394943 CDIP1Q9H305 208 aa3.69□□□□□ -1.82
LIMA1-202ENST00000394943 UBL5Q9BZL1 73 aa3.69□□□□□ -1.82
LIMA1-202ENST00000394943 K7EQZ3 153 aa3.67□□□□□ -1.82
LIMA1-202ENST00000394943 BPY2O14599 106 aa3.67□□□□□ -1.82
LIMA1-202ENST00000394943 NDUFB1O75438 58 aa3.67□□□□□ -1.82
LIMA1-202ENST00000394943 LINC00643Q86TS7 51 aa3.66□□□□□ -1.82
LIMA1-202ENST00000394943 C20orf197Q8N268 126 aa3.66□□□□□ -1.82
LIMA1-202ENST00000394943 MRPL34Q9BQ48 92 aaKnown RBP3.66□□□□□ -1.82
LIMA1-202ENST00000394943 C9orf92A6NGG3 77 aa3.65□□□□□ -1.82
LIMA1-202ENST00000394943 SNURFQ9Y675 71 aa3.65□□□□□ -1.83
LIMA1-202ENST00000394943 ZCCHC13Q8WW36 166 aaKnown RBP3.64□□□□□ -1.83
LIMA1-202ENST00000394943 DEFB116Q30KQ4 102 aa3.64□□□□□ -1.83
LIMA1-202ENST00000394943 IGHV6-1A0A0B4J1U7 121 aa3.63□□□□□ -1.83
LIMA1-202ENST00000394943 hDV103S1A0JD37 113 aa3.63□□□□□ -1.83
LIMA1-202ENST00000394943 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
LIMA1-202ENST00000394943 HRES1P13985 223 aa3.63□□□□□ -1.83
LIMA1-202ENST00000394943 IMUPQ9GZP8 106 aa3.63□□□□□ -1.83
LIMA1-202ENST00000394943 HCG22E2RYF7 251 aa3.62□□□□□ -1.83
LIMA1-202ENST00000394943 WFDC13Q8IUB5 93 aa3.62□□□□□ -1.83
LIMA1-202ENST00000394943 KRTAP4-8Q9BYQ9 185 aa3.61□□□□□ -1.83
LIMA1-202ENST00000394943 A0A0U1RQV1 116 aa3.61□□□□□ -1.83
LIMA1-202ENST00000394943 Q8N9L7 120 aa3.61□□□□□ -1.83
LIMA1-202ENST00000394943 TP53AIP1Q9HCN2 124 aa3.61□□□□□ -1.83
LIMA1-202ENST00000394943 FAT4Q6V0I7 4981 aa3.61□□□□□ -1.83
LIMA1-202ENST00000394943 ATP11AUNQ6ZP68 121 aa3.6□□□□□ -1.83
LIMA1-202ENST00000394943 CASC2Q6XLA1 102 aa3.59□□□□□ -1.83
LIMA1-202ENST00000394943 MUC2Q02817 5179 aa3.57□□□□□ -1.84
LIMA1-202ENST00000394943 ATOX1O00244 68 aa3.56□□□□□ -1.84
LIMA1-202ENST00000394943 Q5W150 140 aa3.56□□□□□ -1.84
LIMA1-202ENST00000394943 UQCRQO14949 82 aa3.56□□□□□ -1.84
LIMA1-202ENST00000394943 MT1HP80294 61 aa3.56□□□□□ -1.84
LIMA1-202ENST00000394943 BRK1Q8WUW1 75 aa3.55□□□□□ -1.84
LIMA1-202ENST00000394943 C5orf47Q569G3 176 aa3.55□□□□□ -1.84
LIMA1-202ENST00000394943 OCR1Q9BZK8 76 aa3.55□□□□□ -1.84
LIMA1-202ENST00000394943 IGKV2-30P06310 120 aa3.55□□□□□ -1.84
LIMA1-202ENST00000394943 COX7CP15954 63 aa3.54□□□□□ -1.84
LIMA1-202ENST00000394943 NDUFS5O43920 106 aa3.52□□□□□ -1.85
LIMA1-202ENST00000394943 C4orf26Q17RF5 130 aa3.52□□□□□ -1.85
LIMA1-202ENST00000394943 H3BPC8 53 aa3.52□□□□□ -1.85
LIMA1-202ENST00000394943 SERP2Q8N6R1 65 aa3.52□□□□□ -1.85
LIMA1-202ENST00000394943 SPINK7P58062 85 aa3.51□□□□□ -1.85
LIMA1-202ENST00000394943 C7orf65Q6ZTY9 151 aa3.5□□□□□ -1.85
LIMA1-202ENST00000394943 LOC101927531A0A1B0GV80 90 aa3.49□□□□□ -1.85
LIMA1-202ENST00000394943 FAM236DA0A1B0GTK5 79 aa3.49□□□□□ -1.85
LIMA1-202ENST00000394943 FAM236CP0DP71 79 aa3.49□□□□□ -1.85
LIMA1-202ENST00000394943 SPTSSBQ8NFR3 76 aa3.48□□□□□ -1.85
LIMA1-202ENST00000394943 CYSTM1Q9H1C7 97 aa3.48□□□□□ -1.85
LIMA1-202ENST00000394943 TRAV22A0A0B4J277 110 aa3.48□□□□□ -1.85
LIMA1-202ENST00000394943 CYP4F30PQ9H0H9 118 aa3.48□□□□□ -1.85
LIMA1-202ENST00000394943 PSPHP1O15172 72 aa3.47□□□□□ -1.85
LIMA1-202ENST00000394943 KRTAP9-2Q9BYQ4 174 aa3.47□□□□□ -1.85
LIMA1-202ENST00000394943 KRTAP3-1Q9BYR8 98 aa3.47□□□□□ -1.85
LIMA1-202ENST00000394943 KRTAP10-6P60371 365 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-202ENST00000394943 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-202ENST00000394943 COX6B2Q6YFQ2 88 aa3.46□□□□□ -1.86
LIMA1-202ENST00000394943 RBM12B-AS1Q9P1G2 102 aa3.46□□□□□ -1.86
LIMA1-202ENST00000394943 TRAV7A0A075B6U4 112 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms