RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 FAM229BQ4G0N7 80 aa5.3□□□□□ -1.56
TDP1-202ENST00000393452 A0A087X002 238 aa5.29□□□□□ -1.56
TDP1-202ENST00000393452 BIRC6Q9NR09 4857 aa5.29□□□□□ -1.56
TDP1-202ENST00000393452 H0Y9P7 68 aa5.29□□□□□ -1.56
TDP1-202ENST00000393452 TRAV22A0A0B4J277 110 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 CDK2AP2O75956 126 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 KRTAP13-2Q52LG2 175 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 LINC00208Q96KT6 92 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 IGHV6-1A0A0B4J1U7 121 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 TP53AIP1Q9HCN2 124 aa5.28□□□□□ -1.56
TDP1-202ENST00000393452 RYR3Q15413 4870 aa5.27□□□□□ -1.57
TDP1-202ENST00000393452 KRTAP1-4P0C5Y4 121 aa5.27□□□□□ -1.57
TDP1-202ENST00000393452 LRP1BQ9NZR2 4599 aa5.26□□□□□ -1.57
TDP1-202ENST00000393452 NOTCH2NLQ7Z3S9 236 aa5.26□□□□□ -1.57
TDP1-202ENST00000393452 MPLKIPQ8TAP9 179 aa5.26□□□□□ -1.57
TDP1-202ENST00000393452 BRK1Q8WUW1 75 aa5.26□□□□□ -1.57
TDP1-202ENST00000393452 RYR2Q92736 4967 aa5.25□□□□□ -1.57
TDP1-202ENST00000393452 MRPL34Q9BQ48 92 aaKnown RBP5.25□□□□□ -1.57
TDP1-202ENST00000393452 VPS13BQ7Z7G8 4022 aa5.25□□□□□ -1.57
TDP1-202ENST00000393452 C1orf64Q8NEQ6 169 aa5.24□□□□□ -1.57
TDP1-202ENST00000393452 CYP4F30PQ9H0H9 118 aa5.24□□□□□ -1.57
TDP1-202ENST00000393452 SPINK6Q6UWN8 80 aa5.24□□□□□ -1.57
TDP1-202ENST00000393452 SPANXA2-OT1Q8N9U9 137 aa5.23□□□□□ -1.57
TDP1-202ENST00000393452 H3BS24 57 aa5.22□□□□□ -1.57
TDP1-202ENST00000393452 J3QL48 77 aa5.22□□□□□ -1.57
TDP1-202ENST00000393452 PKHD1P08F94 4074 aa5.21□□□□□ -1.57
TDP1-202ENST00000393452 A0A1B0GVY2 172 aa5.21□□□□□ -1.57
TDP1-202ENST00000393452 C8orf87E5RJ46 101 aa5.21□□□□□ -1.58
TDP1-202ENST00000393452 PMAIP1Q13794 54 aa5.21□□□□□ -1.58
TDP1-202ENST00000393452 NDUFS5O43920 106 aa5.2□□□□□ -1.58
TDP1-202ENST00000393452 KRTAP17-1Q9BYP8 105 aa5.2□□□□□ -1.58
TDP1-202ENST00000393452 PLA2G1BP04054 148 aaKnown RBP5.2□□□□□ -1.58
TDP1-202ENST00000393452 PRR4Q16378 134 aa5.19□□□□□ -1.58
TDP1-202ENST00000393452 LIMD2Q9BT23 127 aa5.18□□□□□ -1.58
TDP1-202ENST00000393452 KRTAP13-3Q3SY46 172 aa5.18□□□□□ -1.58
TDP1-202ENST00000393452 LINC00313P59037 77 aa5.16□□□□□ -1.58
TDP1-202ENST00000393452 TYMSOSQ8TAI1 123 aa5.16□□□□□ -1.58
TDP1-202ENST00000393452 IGLV7-46A0A075B6I9 117 aa5.16□□□□□ -1.58
TDP1-202ENST00000393452 SPINK1P00995 79 aa5.15□□□□□ -1.58
TDP1-202ENST00000393452 Q5W150 140 aa5.15□□□□□ -1.59
TDP1-202ENST00000393452 Q8N9P0 234 aaPredicted RBP5.15□□□□□ -1.59
TDP1-202ENST00000393452 Q1T7F1 81 aa5.14□□□□□ -1.59
TDP1-202ENST00000393452 KRTAP10-4P60372 401 aaPredicted RBP5.14□□□□□ -1.59
TDP1-202ENST00000393452 LOC101927531A0A1B0GV80 90 aa5.13□□□□□ -1.59
TDP1-202ENST00000393452 PCOTHQ58A44 107 aa5.13□□□□□ -1.59
TDP1-202ENST00000393452 KRTAP16-1A8MUX0 517 aa5.13□□□□□ -1.59
TDP1-202ENST00000393452 SMR3BP02814 79 aaPredicted RBP5.13□□□□□ -1.59
TDP1-202ENST00000393452 RPS29P62273 56 aaKnown RBP5.13□□□□□ -1.59
TDP1-202ENST00000393452 PRR26Q8N8Z3 221 aa5.12□□□□□ -1.59
TDP1-202ENST00000393452 DYNC1H1Q14204 4646 aaKnown RBP5.11□□□□□ -1.59
TDP1-202ENST00000393452 LINC00304Q8N9R0 145 aa5.11□□□□□ -1.59
TDP1-202ENST00000393452 EPPK1P58107 5090 aaKnown RBP5.1□□□□□ -1.59
TDP1-202ENST00000393452 FAM229AH3BQW9 127 aa5.1□□□□□ -1.59
TDP1-202ENST00000393452 PSPHP1O15172 72 aa5.1□□□□□ -1.59
TDP1-202ENST00000393452 SPAG11AQ6PDA7 123 aa5.1□□□□□ -1.59
TDP1-202ENST00000393452 APOBP04114 4563 aaKnown RBP5.07□□□□□ -1.6
TDP1-202ENST00000393452 COA5Q86WW8 74 aa5.07□□□□□ -1.6
TDP1-202ENST00000393452 RBM12B-AS1Q9P1G2 102 aa5.06□□□□□ -1.6
TDP1-202ENST00000393452 A8MUN3 132 aa5.05□□□□□ -1.6
TDP1-202ENST00000393452 IGKV2-30P06310 120 aa5.04□□□□□ -1.6
TDP1-202ENST00000393452 PKHD1L1Q86WI1 4243 aa5.04□□□□□ -1.6
TDP1-202ENST00000393452 A8MU10 97 aa5.04□□□□□ -1.6
TDP1-202ENST00000393452 HRES1P13985 223 aa5.03□□□□□ -1.6
TDP1-202ENST00000393452 FAT1Q14517 4588 aa5.03□□□□□ -1.6
TDP1-202ENST00000393452 HERC2O95714 4834 aa5.02□□□□□ -1.61
TDP1-202ENST00000393452 Q5VV11 94 aa5.02□□□□□ -1.61
TDP1-202ENST00000393452 RETNLBQ9BQ08 111 aa5.02□□□□□ -1.61
TDP1-202ENST00000393452 DMAC1Q96GE9 116 aa5□□□□□ -1.61
TDP1-202ENST00000393452 FLG2Q5D862 2391 aaPredicted RBP4.98□□□□□ -1.61
TDP1-202ENST00000393452 ACYP2P14621 99 aa4.98□□□□□ -1.61
TDP1-202ENST00000393452 CHKB-CPT1BH3BT56 60 aa4.97□□□□□ -1.61
TDP1-202ENST00000393452 IGKV2D-30A0A075B6S6 120 aa4.96□□□□□ -1.62
TDP1-202ENST00000393452 C20orf166-AS1Q96NR2 134 aa4.96□□□□□ -1.62
TDP1-202ENST00000393452 KIAA1109Q2LD37 5005 aa4.95□□□□□ -1.62
TDP1-202ENST00000393452 A8MUU9 505 aa4.95□□□□□ -1.62
TDP1-202ENST00000393452 PRR15LQ9BU68 103 aa4.95□□□□□ -1.62
TDP1-202ENST00000393452 LINC01558Q9Y6Z2 57 aa4.95□□□□□ -1.62
TDP1-202ENST00000393452 KTN1-AS1Q86SY8 53 aa4.94□□□□□ -1.62
TDP1-202ENST00000393452 KRTAP3-3Q9BYR6 98 aa4.93□□□□□ -1.62
TDP1-202ENST00000393452 KRTAP3-2Q9BYR7 98 aa4.93□□□□□ -1.62
TDP1-202ENST00000393452 KRTAP10-8P60410 259 aa4.93□□□□□ -1.62
TDP1-202ENST00000393452 Q5VSD8 79 aa4.93□□□□□ -1.62
TDP1-202ENST00000393452 LCA10Q71F78 164 aa4.93□□□□□ -1.62
TDP1-202ENST00000393452 C9orf92A6NGG3 77 aa4.92□□□□□ -1.62
TDP1-202ENST00000393452 C7orf65Q6ZTY9 151 aa4.92□□□□□ -1.62
TDP1-202ENST00000393452 Q75L30 129 aa4.92□□□□□ -1.62
TDP1-202ENST00000393452 Q8N1X5 172 aa4.92□□□□□ -1.62
TDP1-202ENST00000393452 HSPG2P98160 4391 aa4.91□□□□□ -1.62
TDP1-202ENST00000393452 SPTSSBQ8NFR3 76 aa4.9□□□□□ -1.62
TDP1-202ENST00000393452 ATP11AUNQ6ZP68 121 aa4.89□□□□□ -1.63
TDP1-202ENST00000393452 TNXBP22105 4242 aa4.89□□□□□ -1.63
TDP1-202ENST00000393452 A6NED7 52 aa4.89□□□□□ -1.63
TDP1-202ENST00000393452 LCE2DQ5TA82 110 aaPredicted RBP4.89□□□□□ -1.63
TDP1-202ENST00000393452 RYR1P21817 5038 aa4.88□□□□□ -1.63
TDP1-202ENST00000393452 A6NN06 94 aa4.87□□□□□ -1.63
TDP1-202ENST00000393452 DMBT1Q9UGM3 2413 aaPredicted RBP4.86□□□□□ -1.63
TDP1-202ENST00000393452 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
TDP1-202ENST00000393452 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
TDP1-202ENST00000393452 LRP1Q07954 4544 aaKnown RBP4.85□□□□□ -1.63
TDP1-202ENST00000393452 KRTAP4-5Q9BYR2 181 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms