RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 RYR2Q92736 4967 aa13.5□□□□□ -0.25
MSX2-201ENST00000239243 DYNC1H1Q14204 4646 aaKnown RBP13.49□□□□□ -0.25
MSX2-201ENST00000239243 ZCCHC13Q8WW36 166 aaKnown RBP13.49□□□□□ -0.25
MSX2-201ENST00000239243 TYMSOSQ8TAI1 123 aa13.48□□□□□ -0.25
MSX2-201ENST00000239243 SMR3BP02814 79 aaPredicted RBP13.48□□□□□ -0.25
MSX2-201ENST00000239243 TP53AIP1Q9HCN2 124 aa13.48□□□□□ -0.25
MSX2-201ENST00000239243 H3BPC8 53 aa13.47□□□□□ -0.25
MSX2-201ENST00000239243 C4orf48Q5BLP8 95 aa13.45□□□□□ -0.26
MSX2-201ENST00000239243 MRPL34Q9BQ48 92 aaKnown RBP13.44□□□□□ -0.26
MSX2-201ENST00000239243 H0Y9P7 68 aa13.44□□□□□ -0.26
MSX2-201ENST00000239243 C8orf87E5RJ46 101 aa13.41□□□□□ -0.26
MSX2-201ENST00000239243 TRAV22A0A0B4J277 110 aa13.41□□□□□ -0.26
MSX2-201ENST00000239243 SPINK1P00995 79 aa13.4□□□□□ -0.26
MSX2-201ENST00000239243 C1orf195Q5TG92 126 aa13.4□□□□□ -0.26
MSX2-201ENST00000239243 LINC00208Q96KT6 92 aa13.39□□□□□ -0.27
MSX2-201ENST00000239243 NOTCH2NLQ7Z3S9 236 aa13.37□□□□□ -0.27
MSX2-201ENST00000239243 NDUFS5O43920 106 aa13.37□□□□□ -0.27
MSX2-201ENST00000239243 SERP1Q9Y6X1 66 aa13.36□□□□□ -0.27
MSX2-201ENST00000239243 KMT2CQ8NEZ4 4911 aaKnown RBP13.36□□□□□ -0.27
MSX2-201ENST00000239243 KRTAP10-4P60372 401 aaPredicted RBP13.36□□□□□ -0.27
MSX2-201ENST00000239243 APOBP04114 4563 aaKnown RBP13.36□□□□□ -0.27
MSX2-201ENST00000239243 PRR26Q8N8Z3 221 aa13.34□□□□□ -0.27
MSX2-201ENST00000239243 SPAG11AQ6PDA7 123 aa13.33□□□□□ -0.28
MSX2-201ENST00000239243 RPS29P62273 56 aaKnown RBP13.32□□□□□ -0.28
MSX2-201ENST00000239243 LINC00304Q8N9R0 145 aa13.31□□□□□ -0.28
MSX2-201ENST00000239243 C1orf64Q8NEQ6 169 aa13.31□□□□□ -0.28
MSX2-201ENST00000239243 LINC00313P59037 77 aa13.3□□□□□ -0.28
MSX2-201ENST00000239243 OXTP01178 125 aa13.24□□□□□ -0.29
MSX2-201ENST00000239243 FAM229AH3BQW9 127 aa13.21□□□□□ -0.29
MSX2-201ENST00000239243 FAT1Q14517 4588 aa13.19□□□□□ -0.3
MSX2-201ENST00000239243 SPANXA2-OT1Q8N9U9 137 aa13.19□□□□□ -0.3
MSX2-201ENST00000239243 Q8N9P0 234 aaPredicted RBP13.16□□□□□ -0.3
MSX2-201ENST00000239243 CYP4F30PQ9H0H9 118 aa13.16□□□□□ -0.3
MSX2-201ENST00000239243 LOC101927531A0A1B0GV80 90 aa13.11□□□□□ -0.31
MSX2-201ENST00000239243 KRTAP16-1A8MUX0 517 aa13.11□□□□□ -0.31
MSX2-201ENST00000239243 KRTAP13-3Q3SY46 172 aa13.09□□□□□ -0.31
MSX2-201ENST00000239243 SMIM26A0A096LP01 95 aa13.08□□□□□ -0.32
MSX2-201ENST00000239243 Q5W150 140 aa13.08□□□□□ -0.32
MSX2-201ENST00000239243 PRR4Q16378 134 aa13.06□□□□□ -0.32
MSX2-201ENST00000239243 Q5VSD8 79 aa13.05□□□□□ -0.32
MSX2-201ENST00000239243 PCOTHQ58A44 107 aa13.04□□□□□ -0.32
MSX2-201ENST00000239243 IGLV7-46A0A075B6I9 117 aa13.03□□□□□ -0.32
MSX2-201ENST00000239243 PKHD1L1Q86WI1 4243 aa13.02□□□□□ -0.32
MSX2-201ENST00000239243 RYR3Q15413 4870 aa13□□□□□ -0.33
MSX2-201ENST00000239243 HSPG2P98160 4391 aa12.92□□□□□ -0.34
MSX2-201ENST00000239243 FP248Q71RG6 208 aaPredicted RBP12.92□□□□□ -0.34
MSX2-201ENST00000239243 RETNLBQ9BQ08 111 aa12.89□□□□□ -0.35
MSX2-201ENST00000239243 IGKV2-30P06310 120 aa12.88□□□□□ -0.35
MSX2-201ENST00000239243 KRTAP10-8P60410 259 aa12.88□□□□□ -0.35
MSX2-201ENST00000239243 Q8N1X5 172 aa12.84□□□□□ -0.35
MSX2-201ENST00000239243 RYR1P21817 5038 aa12.82□□□□□ -0.36
MSX2-201ENST00000239243 C4orf26Q17RF5 130 aa12.81□□□□□ -0.36
MSX2-201ENST00000239243 C9orf92A6NGG3 77 aa12.78□□□□□ -0.36
MSX2-201ENST00000239243 COA5Q86WW8 74 aa12.78□□□□□ -0.36
MSX2-201ENST00000239243 C20orf166-AS1Q96NR2 134 aa12.77□□□□□ -0.37
MSX2-201ENST00000239243 FLG2Q5D862 2391 aaPredicted RBP12.77□□□□□ -0.37
MSX2-201ENST00000239243 MPLKIPQ8TAP9 179 aa12.76□□□□□ -0.37
MSX2-201ENST00000239243 HRES1P13985 223 aa12.76□□□□□ -0.37
MSX2-201ENST00000239243 A8MUU9 505 aa12.75□□□□□ -0.37
MSX2-201ENST00000239243 IGKV2D-30A0A075B6S6 120 aa12.73□□□□□ -0.37
MSX2-201ENST00000239243 Q1T7F1 81 aa12.72□□□□□ -0.37
MSX2-201ENST00000239243 TNXBP22105 4242 aa12.71□□□□□ -0.38
MSX2-201ENST00000239243 KRTAP17-1Q9BYP8 105 aa12.7□□□□□ -0.38
MSX2-201ENST00000239243 C7orf65Q6ZTY9 151 aa12.68□□□□□ -0.38
MSX2-201ENST00000239243 V9GYY9 64 aa12.68□□□□□ -0.38
MSX2-201ENST00000239243 LRP1Q07954 4544 aaKnown RBP12.67□□□□□ -0.38
MSX2-201ENST00000239243 ACYP2P14621 99 aa12.67□□□□□ -0.38
MSX2-201ENST00000239243 DMAC1Q96GE9 116 aa12.66□□□□□ -0.38
MSX2-201ENST00000239243 KIAA1109Q2LD37 5005 aa12.63□□□□□ -0.39
MSX2-201ENST00000239243 Q75L30 129 aa12.6□□□□□ -0.39
MSX2-201ENST00000239243 FAT3Q8TDW7 4589 aa12.6□□□□□ -0.39
MSX2-201ENST00000239243 MT1HL1P0DM35 61 aa12.57□□□□□ -0.4
MSX2-201ENST00000239243 EPPK1P58107 5090 aaKnown RBP12.53□□□□□ -0.4
MSX2-201ENST00000239243 CHKB-CPT1BH3BT56 60 aa12.49□□□□□ -0.41
MSX2-201ENST00000239243 DMBT1Q9UGM3 2413 aaPredicted RBP12.47□□□□□ -0.41
MSX2-201ENST00000239243 PSPHP1O15172 72 aa12.45□□□□□ -0.42
MSX2-201ENST00000239243 A8MUN3 132 aa12.44□□□□□ -0.42
MSX2-201ENST00000239243 ATP11AUNQ6ZP68 121 aa12.41□□□□□ -0.42
MSX2-201ENST00000239243 SPINK7P58062 85 aa12.41□□□□□ -0.42
MSX2-201ENST00000239243 LINC01558Q9Y6Z2 57 aa12.4□□□□□ -0.42
MSX2-201ENST00000239243 RPL37P61927 97 aaKnown RBP12.38□□□□□ -0.43
MSX2-201ENST00000239243 MYCBP2O75592 4640 aa12.38□□□□□ -0.43
MSX2-201ENST00000239243 PRR15LQ9BU68 103 aa12.38□□□□□ -0.43
MSX2-201ENST00000239243 XP32Q5T750 250 aa12.36□□□□□ -0.43
MSX2-201ENST00000239243 Q5VV11 94 aa12.34□□□□□ -0.43
MSX2-201ENST00000239243 KRTAP4-5Q9BYR2 181 aa12.29□□□□□ -0.44
MSX2-201ENST00000239243 BRK1Q8WUW1 75 aa12.27□□□□□ -0.44
MSX2-201ENST00000239243 TPRXLQ17RH7 258 aa12.23□□□□□ -0.45
MSX2-201ENST00000239243 PRO0628Q9UI54 55 aa12.22□□□□□ -0.45
MSX2-201ENST00000239243 COX6B2Q6YFQ2 88 aa12.18□□□□□ -0.46
MSX2-201ENST00000239243 SPTSSBQ8NFR3 76 aa12.16□□□□□ -0.46
MSX2-201ENST00000239243 KRTAP3-1Q9BYR8 98 aa12.15□□□□□ -0.46
MSX2-201ENST00000239243 A0A1B0GU69 56 aa12.11□□□□□ -0.47
MSX2-201ENST00000239243 A6NED7 52 aa12.1□□□□□ -0.47
MSX2-201ENST00000239243 J3QL48 77 aa12.06□□□□□ -0.48
MSX2-201ENST00000239243 SEC61GP60059 68 aa11.94□□□□□ -0.5
MSX2-201ENST00000239243 CDC42SE1Q9NRR8 79 aa11.94□□□□□ -0.5
MSX2-201ENST00000239243 BIRC6Q9NR09 4857 aa11.92□□□□□ -0.5
MSX2-201ENST00000239243 ABCA13Q86UQ4 5058 aa11.92□□□□□ -0.5
MSX2-201ENST00000239243 LCA10Q71F78 164 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms