RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 C7orf33Q8WU49 177 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 VPS13DQ5THJ4 4388 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 C1orf137Q5JT78 98 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 DNAH6Q9C0G6 4158 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 Q6ZRX8 168 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 ESRGQ1W209 222 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 IGLV5-37A0A075B6J1 123 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 NDUFB1O75438 58 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 PRB2P02812 416 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-214ENST00000637038 DNAH10OSP0CZ25 163 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 MP68P56378 58 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 Q8NBF4 154 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 C14orf177Q52M58 125 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 Q6ZRP5 223 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 NBEAL1Q6ZS30 2694 aa2.61□□□□□ -1.99
SCN1A-214ENST00000637038 IGLV5-48A0A075B6I7 105 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 M0R2N4 97 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 IGKV4-1P06312 121 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 LINC00474Q9P2X8 69 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 ALMS1Q8TCU4 4167 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 RPL37AP8A6NKH3 93 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 KRTAP4-8Q9BYQ9 185 aa2.6□□□□□ -1.99
SCN1A-214ENST00000637038 PSCAO43653 123 aa2.59□□□□□ -1.99
SCN1A-214ENST00000637038 KRTAP26-1Q6PEX3 210 aa2.59□□□□□ -1.99
SCN1A-214ENST00000637038 REG3GQ6UW15 175 aa2.59□□□□□ -1.99
SCN1A-214ENST00000637038 DNAH8Q96JB1 4490 aa2.59□□□□□ -1.99
SCN1A-214ENST00000637038 DNAH2Q9P225 4427 aa2.59□□□□□ -1.99
SCN1A-214ENST00000637038 IGLV1-50A0A075B6I6 118 aa2.59□□□□□ -2
SCN1A-214ENST00000637038 Q8N377 158 aa2.59□□□□□ -2
SCN1A-214ENST00000637038 KRTAP9-9Q9BYP9 154 aa2.59□□□□□ -2
SCN1A-214ENST00000637038 KRTAP9-4Q9BYQ2 154 aa2.59□□□□□ -2
SCN1A-214ENST00000637038 A0A0A0MQY5 61 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 Q8N9L7 120 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 OCR1Q9BZK8 76 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 HCG22E2RYF7 251 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 UBE2AP49459 152 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 SMIM29Q86T20 159 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 FAM30AQ9NZY2 134 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 KTN1-AS1Q86SY8 53 aa2.58□□□□□ -2
SCN1A-214ENST00000637038 KRTAP29-1A8MX34 341 aaPredicted RBP2.57□□□□□ -2
SCN1A-214ENST00000637038 SPRR4Q96PI1 79 aa2.57□□□□□ -2
SCN1A-214ENST00000637038 H3BPC8 53 aa2.57□□□□□ -2
SCN1A-214ENST00000637038 SPRR1AP35321 89 aa2.57□□□□□ -2
SCN1A-214ENST00000637038 PLECQ15149 4684 aaKnown RBP2.57□□□□□ -2
SCN1A-214ENST00000637038 NBEAL2Q6ZNJ1 2754 aa2.57□□□□□ -2
SCN1A-214ENST00000637038 KRTAP10-11P60412 298 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 HIGD2AQ9BW72 106 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 A0A1W2PNM2 257 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 hDV103S1A0JD37 113 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 FAM229BQ4G0N7 80 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 STARD9Q9P2P6 4700 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 TENM3Q9P273 2699 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 DNAH17Q9UFH2 4485 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 MPLKIPQ8TAP9 179 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 LINC00588Q9Y4M8 146 aa2.56□□□□□ -2
SCN1A-214ENST00000637038 KMT2AQ03164 3969 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 TENM2Q9NT68 2774 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 ST20-AS1Q8NBB2 130 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 Q9BRP9 147 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 PKD1P98161 4303 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 IGKV2-24A0A0C4DH68 120 aa2.55□□□□□ -2
SCN1A-214ENST00000637038 A0A087WSZ3 146 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 KRTAP4-16G5E9R7 235 aaPredicted RBP2.54□□□□□ -2
SCN1A-214ENST00000637038 KRTAP19-1Q8IUB9 90 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 KRTAP9-2Q9BYQ4 174 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.54□□□□□ -2
SCN1A-214ENST00000637038 FAM168BA1KXE4 195 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 K7EQZ3 153 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 CASC2Q6XLA1 102 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 WFDC13Q8IUB5 93 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 IGLV8-61A0A075B6I0 122 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 A8MUN3 132 aa2.54□□□□□ -2
SCN1A-214ENST00000637038 CNBPP62633 177 aaKnown RBP2.54□□□□□ -2
SCN1A-214ENST00000637038 IGFL1Q6UW32 110 aa2.53□□□□□ -2
SCN1A-214ENST00000637038 CYP4F30PQ9H0H9 118 aa2.53□□□□□ -2
SCN1A-214ENST00000637038 ZNF706Q9Y5V0 76 aaPredicted RBP2.53□□□□□ -2
SCN1A-214ENST00000637038 DSCR10P59022 87 aa2.53□□□□□ -2
SCN1A-214ENST00000637038 A8MU10 97 aa2.53□□□□□ -2.01
SCN1A-214ENST00000637038 H0Y9J4 135 aa2.53□□□□□ -2.01
SCN1A-214ENST00000637038 H0Y9P7 68 aa2.53□□□□□ -2.01
SCN1A-214ENST00000637038 LINC00208Q96KT6 92 aa2.53□□□□□ -2.01
SCN1A-214ENST00000637038 BIRC6Q9NR09 4857 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 PHF5AQ7RTV0 110 aaKnown RBP2.52□□□□□ -2.01
SCN1A-214ENST00000637038 DNAH11Q96DT5 4516 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 A8MWP4 228 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 PRLHP81277 87 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 SPANXA2-OT1Q8N9U9 137 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 TP53AIP1Q9HCN2 124 aa2.52□□□□□ -2.01
SCN1A-214ENST00000637038 A0A096LNI7 61 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 Q1T7F1 81 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 TRAV22A0A0B4J277 110 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 C1orf64Q8NEQ6 169 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 LIMD2Q9BT23 127 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 SPRR1BP22528 89 aa2.51□□□□□ -2.01
SCN1A-214ENST00000637038 RPL37AP61513 92 aaKnown RBP2.51□□□□□ -2.01
SCN1A-214ENST00000637038 ZCCHC13Q8WW36 166 aaKnown RBP2.51□□□□□ -2.01
SCN1A-214ENST00000637038 A6NN06 94 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 LINC00313P59037 77 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 Q5VSD8 79 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 KRTAP7-1Q8IUC3 87 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms